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FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool
Open accessAbstract
Summary: FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The dashboard groups samples in dropdowns for navigation among the data sets, utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data. Availability and implementation: FQC is implemented in Python 3 and Javascript, and is maintained under an MIT license. Documentation and source code is available at: https://github.com/pnnl/fqc.
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Cited by
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Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp
Chen, S. (2023) · iMeta · doi:10.1002/imt2.107 · Cited by 2,166
Genome Detective: an automated system for virus identification from high-throughput sequencing data
Vilsker, M., Moosa, Y., Nooij, S., Fonseca, V., Ghysens, Y., Dumon, K., Pauwels, R., Alcantara, L. C., Vanden Eynden, E., Vandamme, A.-M., et al. (2019) · Bioinformatics · doi:10.1093/bioinformatics/bty695 · Cited by 414
fastp 1.0: An ultra‐fast all‐round tool for FASTQ data quality control and preprocessing
Chen, S. (2025) · iMeta · doi:10.1002/imt2.70078 · Cited by 258
Comparative mucomic analysis of three functionally distinct Cornu aspersum Secretions
Cerullo, A. R., McDermott, M. B., Pepi, L. E., Liu, Z.-L., Barry, D., Zhang, S., Yang, X., Chen, X., Azadi, P., Holford, M., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41094-z · Cited by 35
Metadata
- Authors
- Brown, J., Pirrung, M., & McCue, L. A.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2017-06-09
- Volume
- 33
- Issue
- 19
- Pages
- 3137-3139
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2623802615
- Cited by
- 1,097
- References
- 0
- FWCI
- 14.66
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Brown, J., Pirrung, M., & McCue, L. A. (2017). FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. Bioinformatics. https://doi.org/10.1093/bioinformatics/btx373
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
