Cited by 357Alzheimer's disease research and treatmentsAdvanced Proteomics Techniques and ApplicationsDementia and Cognitive Impairment Research

Phosphorylated tau interactome in the human Alzheimer's disease brain

Open access
Drummond, Eleanor, Pires, Geoffrey, MacMurray, Claire, Askenazi, Manor, Nayak, Shruti, Bourdon, Marie, Safar, Jiri, Ueberheide, Beatrix +1 more·2020·Brain

Abstract

Accumulation of phosphorylated tau is a key pathological feature of Alzheimer’s disease. Phosphorylated tau accumulation causes synaptic impairment, neuronal dysfunction and formation of neurofibrillary tangles. The pathological actions of phosphorylated tau are mediated by surrounding neuronal proteins; however, a comprehensive understanding of the proteins that phosphorylated tau interacts with in Alzheimer’s disease is surprisingly limited. Therefore, the aim of this study was to determine the phosphorylated tau interactome. To this end, we used two complementary proteomics approaches: (i) quantitative proteomics was performed on neurofibrillary tangles microdissected from patients with advanced Alzheimer’s disease; and (ii) affinity purification-mass spectrometry was used to identify which of these proteins specifically bound to phosphorylated tau. We identified 542 proteins in neurofibrillary tangles. This included the abundant detection of many proteins known to be present in neurofibrillary tangles such as tau, ubiquitin, neurofilament proteins and apolipoprotein E. Affinity purification-mass spectrometry confirmed that 75 proteins present in neurofibrillary tangles interacted with PHF1-immunoreactive phosphorylated tau. Twenty-nine of these proteins have been previously associated with phosphorylated tau, therefore validating our proteomic approach. More importantly, 34 proteins had previously been associated with total tau, but not yet linked directly to phosphorylated tau (e.g. synaptic protein VAMP2, vacuolar-ATPase subunit ATP6V0D1); therefore, we provide new evidence that they directly interact with phosphorylated tau in Alzheimer’s disease. In addition, we also identified 12 novel proteins, not previously known to be physiologically or pathologically associated with tau (e.g. RNA binding protein HNRNPA1). Network analysis showed that the phosphorylated tau interactome was enriched in proteins involved in the protein ubiquitination pathway and phagosome maturation. Importantly, we were able to pinpoint specific proteins that phosphorylated tau interacts with in these pathways for the first time, therefore providing novel potential pathogenic mechanisms that can be explored in future studies. Combined, our results reveal new potential drug targets for the treatment of tauopathies and provide insight into how phosphorylated tau mediates its toxicity in Alzheimer’s disease.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1093/brain/awaa223

Cites

12 of 12 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Small quantities of MAP2 have been identified in neurofibrillary tangles.

    “Nevertheless, small quantities of MAP2 have been identified in neurofibrillary tangles (34, 35), and interactome studies in human AD brain have captured MAP2 together with oligomeric tau (35, 36).”

    From MAP2 caps tau fibrils and inhibits aggregation (2023) · cites this paper as [35]

    The ‘Proteome of neurofibrillary tangles in sporadic Alzheimer’s disease’ section reports proteins identified in tangle-containing samples, but the passages retrieved do not identify MAP2 or describe its quantity. Searches for ‘MAP2’ and ‘microtubule-associated protein 2’ did not locate a passage establishing the claim in our copy. (LLM, conf=0.70)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 68

  1. Andreev VP, Petyuk VA, Brewer HM, Karpievitch YV, Xie F, Clarke J, et al. Label-free quantitative LC-MS proteomics of Alzheimer's disease and normally aged human brains. J Proteome Res 2012; 11: 3053-67.
  2. Augustinack JC, Sanders JL, Tsai LH, Hyman BT. Colocalization and fluorescence resonance energy transfer between cdk5 and AT8 sug- gests a close association in pre-neurofibrillary tangles and neurofib- rillary tangles. J Neuropathol Exp Neurol 2002; 61: 557-64.
  3. Ayyadevara S, Balasubramaniam M, Parcon PA, Barger SW, Griffin WS, Alla R, et al. Proteins that mediate protein aggregation and cytotoxicity distinguish Alzheimer's hippocampus from normal con- trols. Aging Cell 2016; 15: 924-39.
  4. Babu JR, Geetha T, Wooten MW. Sequestosome 1/p62 shuttles polyu- biquitinated tau for proteasomal degradation. J Neurochem 2005; 94: 192-203.
  5. Baumann K, Mandelkow EM, Biernat J, Piwnica-Worms H, Mandelkow E. Abnormal Alzheimer-like phosphorylation of tau- protein by cyclin-dependent kinases cdk2 and cdk5. FEBS Lett 1993; 336: 417-24.
  6. Bern M, Kil YJ, Becker C. Byonic: advanced peptide and protein iden- tification software. Curr Protoc Bioinformatics 2012; Chapter 13: Unit13.20. Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, et al. SAINT: probabilistic scoring of affinity purification-mass spec- trometry data. Nat Methods 2011; 8: 70-3.
  7. Colacurcio DJ, Nixon RA. Disorders of lysosomal acidification-the emerging role of v-ATPase in aging and neurodegenerative disease. Ageing Res Rev 2016; 32: 75-88.
  8. Collin L, Bohrmann B, Gopfert U, Oroszlan-Szovik K, Ozmen L, Gruninger F. Neuronal uptake of tau/pS422 antibody and reduced progression of tau pathology in a mouse model of Alzheimer's dis- ease. Brain 2014; 137: 2834-46.
  9. Cox J, Hein MY, Luber CA, Paron I, Nagaraj N, Mann M. Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Mol Cell Proteomics 2014; 13: 2513-26.
  10. Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M. Andromeda: a peptide search engine integrated into the MaxQuant environment. J Proteome Res 2011; 10: 1794-805.
  11. Dammer EB, Lee AK, Duong DM, Gearing M, Lah JJ, Levey AI, et al. Quantitative phosphoproteomics of Alzheimer's disease reveals cross-talk between kinases and small heat shock proteins. Proteomics 2015; 15: 508-19.
  12. David DC, Layfield R, Serpell L, Narain Y, Goedert M, Spillantini MG. Proteasomal degradation of tau protein. J Neurochem 2002; 83: 176-85.
  13. Dehmelt L, Halpain S. The MAP2/Tau family of microtubule-associ- ated proteins. Genome Biology 2005; 6: 204.
  14. Drummond E, Goni F, Liu S, Prelli F, Scholtzova H, Wisniewski T. Potential novel approaches to understand the pathogenesis and treat Alzheimer's disease. J Alzheimers Dis 2018a; 64: S299-S312.
  15. Drummond E, Nayak S, Faustin A, Pires G, Hickman RA, Askenazi M, et al. Proteomic differences in amyloid plaques in rapidly pro- gressive and sporadic Alzheimer's disease. Acta Neuropathol 2017; 133: 933-54.
  16. Drummond E, Nayak S, Pires G, Ueberheide B, Wisniewski T. Isolation of amyloid plaques and neurofibrillary tangles from archived Alzheimer's disease tissue using laser-capture microdissec- tion for downstream proteomics. Methods Mol Biol 2018b; 1723: 319-34.
  17. Drummond E, Wisniewski T. Using proteomics to understand Alzheimer's disease pathogenesis. In: Wisniewski T, editor. Alzheimer's disease. Brisbane (AU): Codon Publications; 2019; pp. 37-51.
  18. Falcon B, Zhang W, Murzin AG, Murshudov G, Garringer HJ, Vidal R, et al. Structures of filaments from Pick's disease reveal a novel tau protein fold. Nature 2018a; 561: 137-40.
  19. Falcon B, Zhang W, Schweighauser M, Murzin AG, Vidal R, Garringer HJ, et al. Tau filaments from multiple cases of sporadic and inherited Alzheimer's disease adopt a common fold. Acta Neuropathol 2018b; 136: 699-708.
  20. Feng Q, Luo Y, Zhang XN, Yang XF, Hong XY, Sun DS, et al. MAPT/Tau accumulation represses autophagy flux by disrupting IST1-regulated ESCRT-III complex formation: a vicious cycle in Alzheimer neurodegeneration. Autophagy 2020; 16: 641-58.
  21. Gao L, Wang J, Wang Y, Andreadis A. SR protein 9G8 modulates splicing of tau exon 10 via its proximal downstream intron, a clus- tering region for frontotemporal dementia mutations. Mol Cell Neurosci 2007; 34: 48-58.
  22. Goldbaum O, Oppermann M, Handschuh M, Dabir D, Zhang B, Forman MS, et al. Proteasome inhibition stabilizes tau inclusions in oligodendroglial cells that occur after treatment with okadaic acid. J Neurosci 2003; 23: 8872-80.
  23. Greenberg SG, Davies P, Schein JD, Binder LI. Hydrofluoric acid- treated tau PHF proteins display the same biochemical properties as normal tau. J Biol Chem 1992; 267: 564-9.
  24. Grundke-Iqbal I, Iqbal K, Quinlan M, Tung YC, Zaidi MS, Wisniewski HM. Microtubule-associated protein tau. A component of Alzheimer paired helical filaments. J Biol Chem 1986; 261: 6084-89.
  25. Hondius DC, van Nierop P, Li KW, Hoozemans JJ, van der Schors RC, van Haastert ES, et al. Profiling the human hippocampal prote- ome at all pathologic stages of Alzheimer's disease. Alzheimers Dement 2016; 12: 654-68.
  26. Honjo Y, Ito H, Horibe T, Takahashi R, Kawakami K. Protein disul- fide isomerase-immunopositive inclusions in patients with Alzheimer disease. Brain Research 2010; 1349: 90-6.
  27. Ittner LM, Ke YD, Delerue F, Bi M, Gladbach A, van Eersel J, et al. Dendritic function of tau mediates amyloid-beta toxicity in Alzheimer's disease mouse models. Cell 2010; 142: 387-97.
  28. Keck S, Nitsch R, Grune T, Ullrich O. Proteasome inhibition by paired helical filament-tau in brains of patients with Alzheimer's disease. J Neurochem 2003; 85: 115-22.
  29. Keller JN, Hanni KB, Markesbery WR. Impaired proteasome function in Alzheimer's disease. J Neurochem 2000; 75: 436-9.
  30. Kellogg EH, Hejab NMA, Poepsel S, Downing KH, DiMaio F, Nogales E. Near-atomic model of microtubule-tau interactions. Science 2018; 360: 1242-6.
  31. Kowall NW, Beal MF. Glutamate-, glutaminase-, and taurine-immu- noreactive neurons develop neurofibrillary tangles in Alzheimer's disease. Ann Neurol 1991; 29: 162-7.
  32. Kramer A, Green J, Pollard J Jr, Tugendreich S. Causal analysis approaches in Ingenuity Pathway Analysis. Bioinformatics 2014; 30: 523-30.
  33. Kuusisto E, Salminen A, Alafuzoff I. Early accumulation of p62 in neurofibrillary tangles in Alzheimer's disease: possible role in tangle formation. Neuropath Appl Neuro 2002; 28: 228-37.
  34. Lee MJ, Lee JH, Rubinsztein DC. Tau degradation: the ubiquitin-pro- teasome system versus the autophagy-lysosome system. Prog Neurobiol 2013; 105: 49-59.
  35. Li Q, Peng X, Li Y, Tang W, Zhu J, Huang J, et al. LLPSDB: a data- base of proteins undergoing liquid-liquid phase separation in vitro. Nucleic Acids Res 2020; 48: D320-7.
  36. Lim F, Hernandez F, Lucas JJ, Gomez-Ramos P, Moran MA, Avila J. FTDP-17 mutations in tau transgenic mice provoke lysosomal abnormalities and Tau filaments in forebrain. Mol Cell Neurosci 2001; 18: 702-14.
  37. Liu C, Song X, Nisbet R, Gotz J. Co-immunoprecipitation with tau isoform-specific antibodies reveals distinct protein interactions and highlights a putative role for 2N tau in disease. J Biol Chem 2016; 291: 8173-88.
  38. Lovestone S, Hartley CL, Pearce J, Anderton BH. Phosphorylation of tau by glycogen synthase kinase-3 beta in intact mammalian cells: the effects on the organization and stability of microtubules. Neuroscience 1996; 73: 1145-57.
  39. Mandelkow EM, Mandelkow E. Biochemistry and cell biology of tau protein in neurofibrillary degeneration. Cold Spring Harb Perspect Med 2012; 2: a006247.
  40. Manning G, Whyte DB, Martinez R, Hunter T, Sudarsanam S. The protein kinase complement of the human genome. Science 2002; 298: 1912-34.
  41. Meier S, Bell M, Lyons DN, Ingram A, Chen J, Gensel JC, et al. Identification of novel tau interactions with endoplasmic reticulum proteins in Alzheimer's disease brain. J Alzheimers Dis 2015; 48: 687-702.
  42. Mendonca CF, Kuras M, Nogueira FCS, Pla I, Hortobagyi T, Csiba L, et al. Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease. Neurobiol Dis 2019; 130: 104509.
  43. Minjarez B, Valero Rustarazo ML, Sanchez del Pino MM, Gonzalez- Robles A, Sosa-Melgarejo JA, Luna MJ, et al. Identification of poly- peptides in neurofibrillary tangles and total homogenates of brains with Alzheimer's disease by tandem mass spectrometry. J Alzheimers Dis 2013; 34: 239-62.
  44. Miron J, Picard C, Labonte A, Auld D, Breitner J, Poirier J, et al. Association of PPP2R1A with Alzheimer's disease and specific cogni- tive domains. Neurobiol Aging 2019; 81: 234-43.
  45. Mori H, Kondo J, Ihara Y. Ubiquitin is a component of paired helical filaments in Alzheimer's disease. Science 1987; 235: 1641-4.
  46. Myeku N, Clelland CL, Emrani S, Kukushkin NV, Yu WH, Goldberg AL, et al. Tau-driven 26S proteasome impairment and cognitive dys- function can be prevented early in disease by activating cAMP-PKA signaling. Nat Med 2016; 22: 46-53.
  47. Namba Y, Tomonaga M, Kawasaki H, Otomo E, Ikeda K. Apolipoprotein E immunoreactivity in cerebral amyloid deposits and neurofibrillary tangles in Alzheimer's disease and kuru plaque amyl- oid in Creutzfeldt-Jakob disease. Brain Res 1991; 541: 163-6.
  48. Piras A, Collin L, Gruninger F, Graff C, Ronnback A. Autophagic and lysosomal defects in human tauopathies: analysis of post-mortem brain from patients with familial Alzheimer disease, corticobasal de- generation and progressive supranuclear palsy. Acta Neuropathol Commun 2016; 4: 22.
  49. Pires G, McElligott S, Drusinsky S, Halliday G, Potier MC, Wisniewski T, et al. Secernin-1 is a novel phosphorylated tau bind- ing protein that accumulates in Alzheimer's disease and not in other tauopathies. Acta Neuropathol Commun 2019; 7: 195.
  50. Poppek D, Keck S, Ermak G, Jung T, Stolzing A, Ullrich O, et al. Phosphorylation inhibits turnover of the tau protein by the prote- asome: influence of RCAN1 and oxidative stress. Biochem J 2006; 400: 511-20.
  51. Sacco F, Perfetto L, Castagnoli L, Cesareni G. The human phosphatase interactome: an intricate family portrait. FEBS Lett 2012; 586: 2732-9.
  52. Salminen A, Kaarniranta K, Haapasalo A, Hiltunen M, Soininen H, Alafuzoff I. Emerging role of p62/sequestosome-1 in the pathogen- esis of Alzheimer's disease. Prog Neurobiol 2012; 96: 87-95.
  53. Seyfried NT, Dammer EB, Swarup V, Nandakumar D, Duong DM, Yin L, et al. A multi-network approach identifies protein-specific co- expression in asymptomatic and symptomatic Alzheimer's disease. Cell Syst 2017; 4: 60-72.
  54. Sontag E, Nunbhakdi-Craig V, Lee G, Bloom GS, Mumby MC. Regulation of the phosphorylation state and microtubule-binding ac- tivity of Tau by protein phosphatase 2A. Neuron 1996; 17: 1201-7.
  55. Sotiropoulos I, Galas MC, Silva JM, Skoulakis E, Wegmann S, Maina MB, et al. Atypical, non-standard functions of the microtubule asso- ciated Tau protein. Acta Neuropathol Commun 2017; 5: 91.
  56. Spillantini MG, Goedert M. Tau pathology and neurodegeneration. Lancet Neurol 2013; 12: 609-22.
  57. Szklarczyk D, Gable AL, Lyon D, Junge A, Wyder S, Huerta-Cepas J, et al. STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res 2019; 47: D607-13.
  58. Tan JM, Wong ES, Kirkpatrick DS, Pletnikova O, Ko HS, Tay SP, et al. Lysine 63-linked ubiquitination promotes the formation and autophagic clearance of protein inclusions associated with neurode- generative diseases. Hum Mol Genet 2008; 17: 431-9.
  59. Vickers JC, Riederer BM, Marugg RA, Buee-Scherrer V, Buee L, Delacourte A, et al. Alterations in neurofilament protein immunor- eactivity in human hippocampal neurons related to normal aging and Alzheimer's disease. Neuroscience 1994; 62: 1-13.
  60. Wang P, Joberty G, Buist A, Vanoosthuyse A, Stancu IC, Vasconcelos B, et al. Tau interactome mapping based identification of Otub1 as Tau deubiquitinase involved in accumulation of pathological Tau forms in vitro and in vivo. Acta Neuropathol 2017; 133: 731-49.
  61. Wang Q, Woltjer RL, Cimino PJ, Pan C, Montine KS, Zhang J, et al. Proteomic analysis of neurofibrillary tangles in Alzheimer disease identifies GAPDH as a detergent-insoluble paired helical filament tau binding protein. FASEB J 2005; 19: 869-71.
  62. Wang Y, Zhang Y, Hu W, Xie S, Gong CX, Iqbal K, et al. Rapid alter- ation of protein phosphorylation during postmortem: implication in the study of protein phosphorylation. Sci Rep 2015; 5: 15709.
  63. Wegmann S. Liquid-liquid phase separation of tau protein in neuro- biology and pathology. Adv Exp Med Biol 2019; 1184: 341-57.
  64. Xu L-R, Liu X-L, Chen J, Liang Y. Protein disulfide isomerase inter- acts with tau protein and inhibits its fibrillization. PLoS ONE 2013; 8: e76657. doi: 10.1371/journal.pone.0076657. · DOI
  65. Xu J, Patassini S, Rustogi N, Riba-Garcia I, Hale BD, Phillips AM, et al. Regional protein expression in human Alzheimer's brain corre- lates with disease severity. Commun Biol 2019; 2: 43.
  66. Yoshimura Y, Ichinose T, Yamauchi T. Phosphorylation of tau protein to sites found in Alzheimer's disease brain is catalyzed by Ca2 + /cal- modulin-dependent protein kinase II as demonstrated tandem mass spectrometry. Neuroscience Letters 2003; 353: 185-8.
  67. Zhang Q, Ma C, Gearing M, Wang PG, Chin LS, Li L. Integrated pro- teomics and network analysis identifies protein hubs and network alterations in Alzheimer's disease. Acta Neuropathol Commun 2018; 6: 19.
  68. Zhang Y, Sloan SA, Clarke LE, Caneda C, Plaza CA, Blumenthal PD, et al. Purification and characterization of progenitor and mature human astrocytes reveals transcriptional and functional differences with mouse. Neuron 2016; 89: 37-53.

Cited by

Sorted by citations

Authors
Drummond, E., Pires, G., MacMurray, C., Askenazi, M., Nayak, S., Bourdon, M., Safar, J., Ueberheide, B., & Wisniewski, T.
Affiliations
  • The University of Sydney (AU)
  • Centre National de la Recherche Scientifique (FR)
  • New York University (US)
  • Biomedical Hosting LLC, USA
  • NYU Langone Health (US)
  • Case Western Reserve University (US)
  • Centre for Cognitive Neurology, Department of Neurology, New York University School of Medicine, New York, NY, USA
Corresponding author
Drummond, Eleanor
Venue
Brain
Published
2020-08-19
Volume
143
Issue
9
Pages
2803-2817
ISSN
  • 0006-8950 (ISSN-L)
  • 1460-2156
OpenAlex
W3078141069
Cited by
357
References
12
Citations by year
2026: 52 · 2025: 76 · 2024: 67 · 2023: 70 · 2022: 53 · 2021: 31 · 2020: 3 · 2019: 2 · 2012: 1
FWCI
23.76
Type
journal article
Language
en
Open access
Locations
  • Brain (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
  • Bluesand Foundation and Dementia Australia
  • Philippe Chatrier Foundation
  • National Institutes of Health (P30AG066512, P01AG060882, RF1AG058267)
  • NYU School of Medicine
  • NIH (1S10OD010582-01A1)
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
  • Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
Keywords
phosphorylated tau, Alzheimer's disease, neurofibrillary tangles, protein-protein interaction, ubiquitination, phagosome maturation, VAMP2, hnRNP A1, tauopathy, therapeutic target
MeSH terms
Aged, Aged, 80 and over, Alzheimer Disease, Brain, Chromatography, Liquid, Female, Humans, Male, Middle Aged, Phosphorylation, tau Proteins, Proteomics, Tandem Mass Spectrometry

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review