Amyloid precursor protein processing in human neurons with an allelic series of the PSEN1 intron 4 deletion mutation and total presenilin-1 knockout.
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Abstract Mutations in presenilin-1 (PSEN1), encoding the catalytic subunit of the amyloid precursor protein-processing enzyme γ-secretase, cause familial Alzheimer’s disease. However, the mechanism of disease is yet to be fully understood and it remains contentious whether mutations exert their effects predominantly through gain or loss of function. To address this question, we generated an isogenic allelic series for the PSEN1 mutation intron 4 deletion; represented by control, heterozygous and homozygous mutant induced pluripotent stem cells in addition to a presenilin-1 knockout line. Induced pluripotent stem cell-derived cortical neurons reveal reduced, yet detectable amyloid-beta levels in the presenilin-1 knockout line, and a mutant gene dosage-dependent defect in amyloid precursor protein processing in PSEN1 intron 4 deletion lines, consistent with reduced processivity of γ-secretase. The different effects of presenilin-1 knockout and the PSEN1 intron 4 deletion mutation on amyloid precursor protein-C99 fragment accumulation, nicastrin maturation and amyloid-beta peptide generation support distinct consequences of familial Alzheimer’s disease-associated mutations and knockout of presenilin-1 on the function of γ-secretase.
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The study used iPSC lines with APP V717I, PSEN1 R278I, PSEN1 int4del, and PSEN1 WT (corrected) mutations.
“The following cell lines were used in this study: APP V717I 1 (APP V717I mutation), PSEN1 R278I (PSEN1 R278I mutation), PSEN1 int4del (intron 4 deletion in PSEN1), PSEN1 WT (PSEN1 int4del line CRISPR edited to correct the mutation [19]).”
From Selective suppression of oligodendrocyte-derived amyloid beta rescues neuronal dysfunction in Alzheimer’s disease (2024) · cites this paper as [19]
iPSCs were previously obtained or generated, and validated, by CA and SW.
“iPSCs were previously obtained or generated, and validated, by CA and SW [18,19].”
From Selective suppression of oligodendrocyte-derived amyloid beta rescues neuronal dysfunction in Alzheimer’s disease (2024) · cites this paper as [19]
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Cites
Amyloid deposition as the central event in the aetiology of Alzheimer’s disease
Hardy, J., & Allsop, D. (1991) · Trends in Pharmacological Sciences · doi:10.1016/0165-6147(91)90609-v · Cited by 2,538 · see citing works
Self-citationDeficiency of presenilin-1 inhibits the normal cleavage of amyloid precursor protein
De Strooper, B., Saftig, P., Craessaerts, K., Vanderstichele, H., Guhde, G., Annaert, W., Von Figura, K., & Van Leuven, F. (1998) · Nature · doi:10.1038/34910 · Cited by 1,818 · see citing works
Aph-1, Pen-2, and Nicastrin with Presenilin Generate an Active γ-Secretase Complex
De Strooper, B. (2003) · Neuron · doi:10.1016/s0896-6273(03)00205-8 · Cited by 965 · see citing works
Efficient introduction of specific homozygous and heterozygous mutations using CRISPR/Cas9
Paquet, D., Kwart, D., Chen, A., Sproul, A., Jacob, S., Teo, S., Olsen, K. M., Gregg, A., Noggle, S., & Tessier-Lavigne, M. (2016) · Nature · doi:10.1038/nature17664 · Cited by 951 · see citing works
Human cerebral cortex development from pluripotent stem cells to functional excitatory synapses
Shi, Y., Kirwan, P., Smith, J., Robinson, H. P. C., & Livesey, F. J. (2012) · Nature Neuroscience · doi:10.1038/nn.3041 · Cited by 813 · see citing works
Predictable and precise template-free CRISPR editing of pathogenic variants
Shen, M. W., Arbab, M., Hsu, J. Y., Worstell, D., Culbertson, S. J., Krabbe, O., Cassa, C. A., Liu, D. R., Gifford, D. K., & Sherwood, R. I. (2018) · Nature · doi:10.1038/s41586-018-0686-x · Cited by 569 · see citing works
Takami, M., Nagashima, Y., Sano, Y., Ishihara, S., Morishima-Kawashima, M., Funamoto, S., & Ihara, Y. (2009) · The Journal of Neuroscience · doi:10.1523/jneurosci.2362-09.2009 · Cited by 498 · see citing works
The mechanism of γ‐Secretase dysfunction in familial Alzheimer disease
Chávez‐Gutiérrez, L., Bammens, L., Benilova, I., Vandersteen, A., Benurwar, M., Borgers, M., Lismont, S., Zhou, L., Van Cleynenbreugel, S., Esselmann, H., et al. (2012) · The EMBO Journal · doi:10.1038/emboj.2012.79 · Cited by 495 · see citing works
The Many Substrates of Presenilin/γ-Secretase
Haapasalo, A., & Kovacs, D. M. (2011) · Journal of Alzheimer s Disease · doi:10.3233/jad-2011-101065 · Cited by 487 · see citing works
Mueller-Steiner, S., Zhou, Y.-G., Arai, H., Roberson, E., Sun, B.-G., Chen, J., Wang, X., Yu, G.-Q., Esposito, L., Mucke, L., et al. (2006) · Neuron · doi:10.1016/j.neuron.2006.07.027 · Cited by 466 · see citing works
γ-Secretase Gene Mutations in Familial Acne Inversa
Wang, B., Yang, W., Wen, W., Sun, J., Su, B., Liu, B., Ma, D., Lv, D., Wen, Y., Qu, T., et al. (2010) · Science · doi:10.1126/science.1196284 · Cited by 451 · see citing works
Kwart, D., Gregg, A., Scheckel, C., Murphy, E. A., Paquet, D., Duffield, M. D., Fak, J. J., Olsen, O., Darnell, R. B., & Tessier‐Lavigne, M. (2019) · Neuron · doi:10.1016/j.neuron.2019.07.010 · Cited by 317 · see citing works
Recognition of the amyloid precursor protein by human γ-secretase
Zhou, R., Yang, G., Guo, X., Zhou, Q., Lei, J., & Shi, Y. (2019) · Science · doi:10.1126/science.aaw0930 · Cited by 304 · see citing works
Renaud, J.-B., Boix, C., Charpentier, M., Cian, A. D., Cochennec, J., Duvernois‐Berthet, E., Perrouault, L., Tesson, L., Edouard, J., Thinard, R., et al. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.02.018 · Cited by 295 · see citing works
Sannerud, R., Esselens, C. W., Ejsmont, P., Mattera, R., Rochin, L., Tharkeshwar, A. K., Baets, G. D., Wever, V. D., Habets, R., Baert, V., et al. (2016) · Cell · doi:10.1016/j.cell.2016.05.020 · Cited by 279 · see citing works
Alzheimer’s-Causing Mutations Shift Aβ Length by Destabilizing γ-Secretase-Aβn Interactions
Szaruga, M., Munteanu, B., Lismont, S., Veugelen, S., Horré, K., Mercken, M., Saido, T. C., Ryan, N. S., De Vos, T., Savvides, S. N., et al. (2017) · Cell · doi:10.1016/j.cell.2017.07.004 · Cited by 248 · cited 2× · see citing works
“, 2019) and mechanistic studies (Szaruga et al., 2017; Petit et al., 2019) whereby fAD mutations appear to destabilize substrate to holo-enzyme complex interaction to release longer Ab fragments before complete enzymatic processing, rather than altering the PSEN1 subunit activity.”
Self-citationStructural basis of Notch recognition by human γ-secretase
Yang, G., Zhou, R., Zhou, Q., Guo, X., Yan, C., Ke, M., Lei, J., & Shi, Y. (2018) · Nature · doi:10.1038/s41586-018-0813-8 · Cited by 239 · see citing works
Ryan, N. S., Nicholas, J. M., Weston, P. S. J., Liang, Y., Lashley, T., Guerreiro, R. J., Adamson, G., Kenny, J., Beck, J. A., Chávez‐Gutiérrez, L., et al. (2016) · The Lancet Neurology · doi:10.1016/s1474-4422(16)30193-4 · Cited by 238 · see citing works
Self-citationWGE: a CRISPR database for genome engineering
Hodgkins, A., Farne, A., Perera, S., Grego, T., Parry-Smith, D., Skarnes, W., & Iyer, V. (2015) · Bioinform. · doi:10.1093/bioinformatics/btv308 · Cited by 202 · see citing works
Gillman, K. W., Starrett, J. E., Parker, M. F., Xie, K. M., Bronson, J. J., Marcin, L. R., McElhone, K. E., Bergstrom, C. P., Mate, R. A., Williams, R. D., et al. (2010) · ACS Medicinal Chemistry Letters · doi:10.1021/ml1000239 · Cited by 185 · see citing works
Recognition of the Amyloid Precursor Protein by Human gamma-secretase
Zhou, R., Yang, G., Guo, X., Zhou, Q., Lei, J., & Shi, Y. (2018) · Worldwide Protein Data Bank · doi:10.2210/pdb6iyc/pdb · Cited by 185 · see citing works
Presenilin 1 Is Required for Maturation and Cell Surface Accumulation of Nicastrin
Leem, J. Y., Vijayan, S., Han, P., Cai, D., Machura, M., Radomski, K. L., Veselits, M., Xu, H., & Thinakaran, G. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.c200148200 · Cited by 182 · see citing works
APP Metabolism Regulates Tau Proteostasis in Human Cerebral Cortex Neurons.
Moore, S., Evans, L. D. B., Andersson, T., Portelius, E., Smith, J., Dias, T. B., Saurat, N., McGlade, A., Kirwan, P., Blennow, K., et al. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.03.068 · Cited by 179 · see citing works
Self-citationWoodruff, G., Young, J. E., Martinez, F. J., Buen, F., Gore, A., Kinaga, J., Li, Z., Yuan, S. H., Zhang, K., & Goldstein, L. S. B. (2013) · Cell Reports · doi:10.1016/j.celrep.2013.10.018 · Cited by 177 · see citing works
Qualitative changes in human γ-secretase underlie familial Alzheimer’s disease
Szaruga, M., Veugelen, S., Benurwar, M., Lismont, S., Sepulveda-Falla, D., Lleo, A., Ryan, N. S., Lashley, T., Fox, N. C., Murayama, S., et al. (2015) · Journal of Experimental Medicine · doi:10.1084/jem.20150892 · Cited by 155 · see citing works
Self-citationCryo-EM structure of gamma secretase in complex with a Notch fragment
Yang, G., Zhou, R., Zhou, Q., Guo, X., Yan, C., Ke, M., Lei, J., & Shi, Y. (2018) · Worldwide Protein Data Bank · doi:10.2210/pdb6idf/pdb · Cited by 154 · see citing works
Arber, C., Toombs, J., Lovejoy, C., Ryan, N. S., Paterson, R. W., Willumsen, N., Gkanatsiou, E., Portelius, E., Blennow, K., Heslegrave, A., et al. (2020) · Molecular Psychiatry · doi:10.1038/s41380-019-0410-8 · Cited by 148 · see citing works
Self-citationSequential Amyloid-β Degradation by the Matrix Metalloproteases MMP-2 and MMP-9*
Hernández-Guillamon, M., Mawhirt, S., Blais, S., Montaner, J., Neubert, T., Rostagno, A., & Ghiso, J. (2015) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.610931 · Cited by 110 · see citing works
Familial Alzheimer’s Disease Mutations in Presenilin Generate Amyloidogenic Aβ Peptide Seeds
Veugelen, S., Saito, T., Saido, T. C., Chávez‐Gutiérrez, L., & Strooper, B. D. (2016) · Neuron · doi:10.1016/j.neuron.2016.03.010 · Cited by 107 · see citing works
γ-Secretase Associated with Lipid Rafts
Matsumura, N., Takami, M., Okochi, M., Wada‐Kakuda, S., Fujiwara, H., Tagami, S., Funamoto, S., Ihara, Y., & Morishima‐Kawashima, M. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.510131 · Cited by 105 · see citing works
Presenilins are not required for Aβ42 production in the early secretory pathway
Wilson, C., Doms, R. W., Zheng, H., & Lee, V. M. ‐. (2002) · Nature Neuroscience · doi:10.1038/nn898 · Cited by 99 · see citing works
Jonghe, C. D., MarcCruts, Rogaeva, E. A., Tysoe, C. J., Singleton, A., Vanderstichele, H., Meschino, W. S., Dermaut, B., Vanderhoeven, I., Backhovens, H., et al. (1999) · Human Molecular Genetics · doi:10.1093/hmg/8.8.1529 · Cited by 93 · see citing works
Self-citationTysoe, C. J., Whittaker, J., Xuereb, J. H., Cairns, N. J., Cruts, M., Broeckhoven, C. V., Wilcock, G. K., & Rubinsztein, D. C. (1998) · The American Journal of Human Genetics · doi:10.1086/301672 · Cited by 73 · see citing works
Petit, D., Hitzenberger, M., Lismont, S., Zoltowska, K. M., Ryan, N. S., Mercken, M. H., Bischoff, F., Zacharias, M., & Chávez‐Gutiérrez, L. (2019) · The EMBO Journal · doi:10.15252/embj.2019101494 · Cited by 50 · see citing works
Self-citationLoss of Aβ43 Production Caused by Presenilin-1 Mutations in the Knockin Mouse Brain
Xia, D., Kelleher, R. J., & Shen, J. (2016) · Neuron · doi:10.1016/j.neuron.2016.03.009 · Cited by 34 · see citing works
Lessard, C. B., Rodriguez, E., Ladd, T. B., Minter, L. M., Osborne, B. A., Miele, L., Golde, T. E., & Ran, Y. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra119.008041 · Cited by 17 · see citing works
Cruts, M., Jonghe, C. D., Rogaeva, E. A., Tysoe, C. J., Singleton, A., Vanderstichele, H., Meschino, W. S., Dermaut, B., Vanderhoeven, I., Backhovens, H., et al. (1999) · Ghent University Academic Bibliography (Ghent University) · Cited by 14 · see citing works
Self-citation
Flagged first, then by citations
1 of the 38 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Ciurea, A. V., Mohan, A. G., Covache-Busuioc, R.-A., Costin, H. P., Glavan, L.-A., Corlatescu, A.-D., & Saceleanu, V. M. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241310809 · Cited by 149 · see citing works
Familial Alzheimer’s disease mutations in PSEN1 lead to premature human stem cell neurogenesis
Arber, C., Lovejoy, C., Harris, L., Willumsen, N., Alatza, A., Casey, J. M., Lines, G., Kerins, C., Mueller, A. K., Zetterberg, H., et al. (2021) · Cell Reports · doi:10.1016/j.celrep.2020.108615 · Cited by 116 · see citing works
Self-citationRajani, R. M., Ellingford, R., Hellmuth, M., Harris, S. S., Taso, O. S., Graykowski, D., Lam, F. K. W., Arber, C., Fertan, E., Danial, J. S. H., et al. (2024) · PLOS Biology · doi:10.1371/journal.pbio.3002727 · Cited by 57 · see citing works
“…patients as well as an isogenic control, to examine this question in well-established lines both with and without pathological mutations affecting A β production [18,19]; due to the rarity of iPSC lines with fAD mutations, we did not compare between different lines, but considered them together.”
BackgroundSelf-citationKonstantinidis, E., Molisak, A., Perrin, F., Streubel-Gallasch, L., Fayad, S., Kim, D. Y., Petri, K., Aryee, M. J., Aguilar, X., György, B., et al. (2022) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2022.03.022 · Cited by 57 · see citing works
Knockdown of Amyloid Precursor Protein: Biological Consequences and Clinical Opportunities
Gabriele, R. M. C., Abel, E., Fox, N. C., Wray, S., & Arber, C. (2022) · Frontiers in Neuroscience · doi:10.3389/fnins.2022.835645 · Cited by 44 · see citing works
Self-citationPimenova, A. A., & Goate, A. (2020) · Neurobiology of Disease · doi:10.1016/j.nbd.2020.104785 · Cited by 30 · see citing works
Elsworthy, R. J., King, M. C., Grainger, A. I., Fisher, E., Crowe, J. A., Alqattan, S., Ludlam, A., Hill, E. J., & Aldred, S. (2021) · Molecular and Cellular Neuroscience · doi:10.1016/j.mcn.2021.103631 · Cited by 19 · see citing works
Fertan, E., Hung, C., Danial, J. S. H., Lam, J. Y. L., Preman, P., Albertini, G., English, E. A., Böken, D., Livesey, F. J., Strooper, B. D., et al. (2024) · Brain Communications · doi:10.1093/braincomms/fcae454 · Cited by 16 · see citing works
Watanabe, H., Imaizumi, K., Cai, T., Zhou, Z., Tomita, T., & Okano, H. (2021) · eNeuro · doi:10.1523/eneuro.0500-20.2021 · Cited by 14 · see citing works
Arber, C., Alatza, A., Leckey, C. A., Paterson, R. W., Zetterberg, H., & Wray, S. (2021) · Journal of Neurochemistry · doi:10.1111/jnc.15315 · Cited by 12 · see citing works
Self-citationArber, C., Belder, C. R. S., Tomczuk, F., Gabriele, R. M. C., Buhidma, Y., Farrell, C., O’Connor, A., Rice, H., Lashley, T., Fox, N. C., et al. (2024) · Alzheimer s & Dementia · doi:10.1002/alz.13904 · Cited by 12 · see citing works
Self-citationWillumsen, N., Arber, C., Lovejoy, C. E. J., Toombs, J., Alatza, A., Weston, P. S. J., Chávez‐Gutiérrez, L., Hardy, J., Zetterberg, H., Fox, N. C., et al. (2022) · Brain Communications · doi:10.1093/braincomms/fcac321 · Cited by 10 · see citing works
Self-citationZiff, O. J., Jolly, S., Casey, J. M., Granat, L., Samra, S., Setó‐Salvia, N., Alatza, A., Phadke, L., Galet, B., Ravassard, P., et al. (2025) · Molecular Neurodegeneration · doi:10.1186/s13024-025-00864-7 · Cited by 9 · see citing works
Self-citationLiang, J., LaFleur, B., Hussainy, S., & Perry, G. L. (2023) · Journal of Alzheimer s Disease · doi:10.3233/jad-221241 · Cited by 4 · see citing works
Saguer, I. L., Gabriele, R. M. C., Bradshaw, T. Y., Leckey, C. A., Belder, C. R. S., Chávez‐Gutiérrez, L., de Silva, R., Fox, N. C., Wray, S., Oxtoby, N. P., et al. (2026) · Brain Communications · doi:10.1093/braincomms/fcag105 · Cited by 3 · see citing works
Self-citation[Progress on loss-of-function hypothesis of presenilin-1 mutations in Alzheimer diseases].
Yan, M., Wang, X., & Guo, X. (2020) · PubMed Central · doi:10.3785/j.issn.1008-9292.2020.08.03 · Cited by 3 · see citing works
Elsworthy, R. J., Finelli, M. J., Aqattan, S., Dunleavy, C., King, M. C., Ludlam, A., Allen, S. L., Prosser, S., Chen, R. E., Martínez‐Jarquín, S., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.23.554346 · Cited by 2 · see citing works
Ziff, O. J., Jolly, S., Casey, J. M., Granat, L., Samra, S. K., Setó‐Salvia, N., Alatza, A., Phadke, L., Galet, B., Ravassard, P., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.09.09.611621 · Cited by 2 · see citing works
Self-citationValentin‐Escalera, J., Denis, H. L., Pillet, P., Tournissac, M., Tremblay, C., Émond, V., Hébert, S. S., Planel, E., & Calon, F. (2026) · Research Square · doi:10.21203/rs.3.rs-10436119/v1
- Authors
- Arber, C., Villegas-Llerena, C., Toombs, J., Pocock, J. M., Ryan, N. S., Fox, N. C., Zetterberg, H., Hardy, J., & Wray, S.
- Affiliations
- UCL Queen Square Institute of Neurology (GB)
- UK Dementia Research Institute (GB)
- Sahlgrenska University Hospital (SE)
- Corresponding author
- Wray, Selina
- ORCID
- Venue
- Brain Communications
- Publisher
- Oxford University Press (OUP)
- Published
- 2019-01-01
- Volume
- 1
- Issue
- 1
- Pages
- fcz024-fcz024
- ISSN
- 2632-1297 (ISSN-L)
- PMC
- PMC7212081
- OpenAlex
- W2980711048
- Cited by
- 19
- References
- 38
- Citations by year
- 2026: 2 · 2025: 1 · 2024: 4 · 2023: 3 · 2022: 3 · 2021: 4 · 2020: 2
- FWCI
- 1.54
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Brain Communications (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Funders
- National Institute for Health Research University College London Hospitals Biomedical Research Centre
- Leonard Wolfson Experimental Neurology Centre
- UK Dementia Research Institute
- Alzheimer’s Society
- Alzheimer’s Research UK Senior Research Fellowship
- University of London Chadburn Academic Clinical Lectureship in Medicine
- Dementia Research Institute at UCL
- UK Medical Research Council
- MRC Dementia Platform UK (MR/M02492X/1)
- MRC-UCL LMCB (MC_U12266B)
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Keywords
- presenilin 1, gamma-secretase, APP processing, familial Alzheimer's disease, amyloid-beta, nicastrin, gene dosage
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