EpiFactors: a comprehensive database of human epigenetic factors and complexes
Medvedeva, Yulia A., Lennartsson, Andreas, Ehsani, Rezvan, Kulakovskiy, Ivan V., Vorontsov, Ilya E., Panahandeh, Pouda, Khimulya, Grigory, Kasukawa, Takeya +2 more·2015·Database
Cited by (307)
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- Unraveling the complexity of skin’s biological aging utilizing epigenetic clocksAgata Bienkowska, Minyue Qi, Κωνσταντίνα Καντά, Maria del Pilar Bonilla-Tobar, Henry Völzke, Stefan Gallinat, Sören Jaspers, Sven Clemann, Marc Winnefeld, Elke Grönniger et al. · 2026 · Clinical Epigenetics
- Epigenome Database and Analysis ToolsJu Han Kim · 2019 · Learning materials in biosciences
- Bladder Cancer Prediction Using Genetic Algorithm and Fuzzy Rule-Based SystemV. Panchami, T. I. Manish · 2021 · International Conference on Communication, Control and Information Sciences (ICCISc)
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- Comprehensive Analysis of Epigenetic Associated Genes with Differential Gene Expression and Prognosis in Gastric CancerYan Li, Songlin An, Xin-Bao Li, Bing Li · 2022 · Combinatorial Chemistry & High Throughput Screening
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- Alternative Balance between Transcriptional and Epigenetic Regulation during Developmental Proliferation of Human Cranial Neural Crest CellsChristophe Desterke, Raquel Francés, Claudia Monge, Agnès Marchio, Pascal Pineau, Jorge Mata-Garrido · 2024 · Cells
- The Dynamic Regulation of Daxx-Mediated Transcriptional Inhibition by SUMO and PML NBsJia Gao, Tingting Liu, Yang Dong-mei, Qinhui Tuo · 2025 · International Journal of Molecular Sciences
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- A Genome Model to Explain Major Features of Neurodevelopmental Disorders in NewbornsBernard Friedenson · 2019 · Biomedical Informatics Insights
- Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinomaBaishuang Yang, Xueyao Rong, Chen Jiang, Meihua Long, Aibin Liu, Qiong Chen · 2023 · Aging
- KAT6A mutations drive transcriptional dysregulation of cell cycle and Autism risk genes in an Arboleda-Tham Syndrome cerebral organoid modelAileen A. Nava, Connor T. Jops, Celine K. Vuong, Samantha L. Niles-Jensen, Leroy Bondhus, Cameron J. Ong, Luis de la Torre-Ubieta, Michael J. Gandal, Valerie A. Arboleda · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- WITHDRAWN: High throughput CRISPR perturbation screens identify epigenetic regulators impacting primordial germ cell developmentLiangdao Li, Xin-Bao Ding, Alex P. Sheft, J. Schimenti · 2024 · bioRxiv
- Epigene functional diversity: isoform usage, disordered domain content, and variable binding partnersLeroy Bondhus, Aileen A. Nava, Isabelle S. Liu, Valerie A. Arboleda · 2025 · Epigenetics & Chromatin
- Histone Deacetylase Inhibitors orchestrate epigenetic signalling and alter the nucleoporins and nuclear envelope in cervical cancerHarsha Rani, Shabir Ahmad Ganai, Vijayalakshmi Mahadevan · 2025 · Translational Oncology
- Comprehensive Analysis of Epigenetic Signatures in Non‐Small Cell Lung Cancer: Development and Validation of an Epigenetics‐Based Prognostic Model for Drug Sensitivity PredictionLi Ye, Ning Jiang, Yingtao Hao, Yunpeng Zhao, Xiaogang Zhao, Weiquan Zhang · 2025 · The FASEB Journal
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- Stimulus-responsive nuclear moonlighting of plant metabolic enzymes rewires chromatinGuiyu Xiao, Jisen Zhang, Qiutao Xu · 2026 · Trends in Biochemical Sciences
- Dysregulated transcription in core- and pol-specific CD8 T cells can be targeted by HDAC inhibition to improve T-cell function in chronic hepatitis BCamilla Ceccatelli Berti, Ilaria Montali, Sara Doselli, Benedetta Farina, Simona Schivazappa, Andrea Lorenzo Vecchi, Marzia Rossi, Valentina Reverberi, Anna Montali, Dana Sambarino et al. · 2026 · Journal of Hepatology
- The role of chromatin modifiers in common neurodevelopmental disordersRaymond A. Poot · 2020 · Elsevier eBooks
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- Oxygen Level Modifies the Expression of Genes Involved in the Epigenetic Regulation of Multipotent Stromal Cells In VitroП. И. Бобылева, Yu. V. Rudimova, Ludmila B. Buravkova · 2023 · Bulletin of Experimental Biology and Medicine
- Epigenetic target identification strategy based on multi-feature learningLingfeng Chen, Rui Gu, Yuanyuan Li, Haichun Liu, Weijie Han, Yingchao Yan, Yadong Chen, Yanmin Zhang, Yulei Jiang · 2023 · Journal of Biomolecular Structure and Dynamics
- Integrated in-silico approach to explore the therapeutic potential of RNAs and druggable polyphenols to mine alternative breast cancer therapeutic strategies targeting cancer hallmarksSohini Chakraborty, Satarupa Banerjee · 2025 · Journal of Biomolecular Structure and Dynamics
- A novel chromatin regulator-related immune checkpoint related gene prognostic signature and potential candidate drugs for endometrial cancer patientsZesi Liu, Hongxia Yang, Ziyu Chen, Chunli Jing · 2022 · Hereditas
- CpG traffic lights are markers of regulatory regions in humansAbdullah M. Khamis, Anna V. Lioznova, Artem V. Artemov, Vasily E. Ramensky, Vladimir B. Bajić, Yulia A. Medvedeva · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
- Pre-clinical Strategies to Overcome Drug-Resistant Multiple Myeloma: Predictive Transcriptomics and Targeting the Myeloma EpigenomeTaylor Harding · 2018 · University of Minnesota Digital Conservancy (University of Minnesota)
- Epigenome erosion drives neural crest-like phenotypic mimicry in triple-negative breast cancer and other SOX10+ malignanciesJodi M. Saunus, Xavier Marc De Luca, Korinne S. Northwood, Ashwini Raghavendra, Alexander Hasson, Amy E. McCart Reed, Malcolm Lim, Samir Lal, Ana Cristina Vargas, Jamie R. Kutasovic et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- High-resolution transcriptomic and epigenetic profiling identifies novel regulators of COPD phenotypes in human lung fibroblastsUwe Schwartz, Maria Llamazares Prada, Stephanie T. Pohl, Mandy Richter, Raluca Tamas, Michael J. Schuler, Corinna Keller, Vedrana Mijošek, Thomas Muley, Marc Andre Schneider et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- ASXL1 mutations that cause Bohring Opitz Syndrome (BOS) or acute myeloid leukemia share epigenomic and transcriptomic signaturesIsabella Lin, Zain Awamleh, Angela Wei, Bianca E. Russell, Rosanna Weksberg, Valerie A. Arboleda · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- NRF1 Transcriptomic Signatures Contribute to the Pathogenesis of the Most Aggressive Brain Cancer - GlioblastomaKaumudi M. Bhawe · 2021
- ENO1 as a biomarker of breast cancer progression and metastasis – a bioinformatic approachAthina Giannoudis, Alistair Heath, Vijay S. Sharma · 2023 · medRxiv
- Tissue-Specific Co-Expression Patterns of BAF Complexes Provide Regulatory Insights Across Human Tissues with Implications for Endocrine and Non-Endocrine FunctionsXiaowei Dong, Neshatul Haque, Jessica B. Wagenknecht, Michael T. Zimmermann · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Characterisation of the hepatocyte response to long-term Listeria monocytogenes infectionNatalie Descoeudres · 2021
- Chromatin and Polycomb: Biology and bioinformaticsRoman Kudrin, Andrey A. Mironov, Elena D. Stavrovskaya · 2017 · Molecular Biology
- KMT1/Suv39 methyltransferase family regulates peripheral heterochromatin tethering via histone and non-histone protein methylationsRadhika Arasala Rao, Alhad Ashok Ketkar, Neelam Kedia, Vignesh K Krishnamoorthy, Vairavan Lakshmanan, Pankaj Kumar, Abhishek Mohanty, Shilpa Dilip Kumar, Sufi O Raja, Akash Gulyani et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Experimental Design and Bioinformatic Analysis of DNA Methylation DataYulia A. Medvedeva, Alex Shershebnev · 2018 · Methods in molecular biology
- Epigenetic Patterns/Therapies Associated with Genetic DisordersELIZABETH A. MAZZIO, Karam F. A. Soliman · 2018 · Springer eBooks
- A Genome Model Linking Birth Defects to InfectionsBernard Friedenson · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- TINC - a method to dissect transcriptional complexes at single locus resolution - reveals novel Nanog regulators in mouse embryonic stem cellsAnja S. Knaupp, Monika Mohenska, Michael R. Larcombe, Ethan Ford, SM Lim, Ka Wai Wong, Jinxin Chen, Jaber Firas, Cheng Huang, Xiangqiong Liu et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Activation of the Crtc2/Creb1 transcriptional network in skeletal muscle enhances weight loss during intermittent fastingNelson E. Bruno, Jerome C. Nwachukwu, Sathish Srinivasan, Richard Hawkins, David M. Sturgill, Gordon L. Hager, Stephen Hurst, Shey‐Shing Sheu, Michael D. Conkright, K.W. Nettles · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- CXCR5 gene expression in human lymph node CD8 + T cells is regulated by DNA methylation and nucleosomal occupancyFunsho J. Ogunshola, Werner Smidt, Anneta Naidoo, Thandeka Nkosi, Thandekile Ngubane, Trevor Khaba, Omolara O. Baiyegunhi, Sam Rasehlo, Ismail Jajbhay, Krista L. Dong et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Alignment-free method for functional annotation of amino acid substitutions: Application on epigenetic factors involved in hematologic malignanciesBranislava Gemović, Vladimir Perović, Radoslav S. Davidović, Tamara Drljača, Nevena Veljković · 2021 · PLoS ONE
- The Role of CPT1A as a Biomarker of Breast Cancer Progression – a Bioinformatic AnalysisVijay S. Sharma, Mitali Das, Athina Giannoudis · 2022 · Research Square
- Epigenetic Target Prediction with Accurate Machine Learning ModelsNorberto Sánchez‐Cruz, José L. Medina‐Franco · 2021 · ChemRxiv
- Epigenetics in EpidemiologyHumberto Nicolini, Alma Delia Genis Mendoza, José Jaime Martínez‐Magaña · 2022 · Springer eBooks
- Sex and gene regulation in cardiovascular health and diseaseRobin J. G. Hartman · 2022
- Methamphetamine induced regional-specific transcriptomic and epigenetic changes in the rat brainBenpeng Miao, Xiaoyun Xing, Viktoriia Bazylianska, Pamela A. F. Madden, Anna Moszczyńska, Bo Zhang · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- The Role of CPT1A as a Biomarker of Breast Cancer Progression – A Bioinformatic AnalysisMitali Das, Athina Giannoudis, Vijay S. Sharma · 2022 · Research Square
- Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concern.Cong Ji, Junbin Shao · 2022 · Research Square
- Identification of a chromatin regulator signature in prognosis and immune infiltration in breast cancerWeiran Zhang, Hongming Song, Jing Xia, Yuqi Huan, Xiaowei Wang, Bin Kong · 2022 · Research Square
- Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concern.Cong Ji, Junbin Shao · 2022 · Research Square
- Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concern.Cong Ji, Junbin Jack Shao · 2022 · Research Square
- Modulating the epigenetic state promotes the reprogramming of transformed cells to pluripotency in a line-specific mannerXiuling Fu, Qiang Zhuang, Isaac A. Babarinde, Liyang Shi, Gang Ma, Haoqing Hu, Yuhao Li, Jiao Chen, Zhen Xiao, Boping Deng et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concern.Cong Ji, Junbin Jack Shao · 2023 · Research Square
- Aberrant DNA methylation of uveal melanoma drivers as an excellent prognostic toolAndrea Šoltýsová, Dana Dvorská, Viera Horváthová Kajabová, Martina Pecimonova, Klaudia Cepcekova, Andrej Ficek, Lucia Demková, Verona Buociková, Pavel Babál, Ivan Juras et al. · 2023 · Research Square
- Publicly available resources in COVID-19 research and their applicationsKatarina Baralić, Katarina Živančević, Dragica Božić, Danijela Đukić-Ćosić · 2023 · Elsevier eBooks
- Explainable artificial intelligence to stratify pan-cancer patients for immune checkpoint inhibitor decision makingYuanyuan Shen · 2022
- Identification of the clinical prediction model and biomarkers based on chromatin regulators in colon cancer by integrated analysis of bulk- and single-cell RNA sequencing dataYichao Ma, Fang Fang, Kai Liao, Jingqiu Zhang, Wei Chen, Yiqun Liao, Bin Zhao, Yongkun Fang, Yuji Chen, Daorong Wang et al. · 2023 · Research Square
- Zebrafish model of tcn2 deletion reveals new molecular insights into the role of vitamin B12 in embryonic developmentAjay Deepak Verma, Suraj Singh Nongmaithem, Challapalli Mounika, Swetha Ramachandran, Anushri Umesh, Giriraj R. Chandak · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- A Bioinformatic Characterisation of the Glyolytic Enzyme ENO1 as a Biomarker of Breast Cancer ProgressionAthina Giannoudis, Alistair Heath, Vijay S. Sharma · 2024 · Research Square
- Epi-Clock: A Sensitive Platform to Help Understand Pathogenic Disease Outbreaks and Facilitate the Response to Future Outbreaks of ConcernCong Ji, Junbin Jack Shao · 2024 · SSRN Electronic Journal
- A bioinformatics-based analysis of chromatin regulators in atrial fibrillation uncovers potential novel biomarkers and immune infiltration characteristicsYue Li, Xiao Han, Fei Wang, Mengxi Chen · 2024 · Research Square
- Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concern.Cong Ji, Junbin Jack Shao · 2024 · Research Square
- Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concern.Cong Ji, Junbin Jack Shao · 2024 · Research Square
- Aerobic Exercise Alleviates High-Fat Diet-Induced Hepatic Steatosis in Mice by Inhibiting Aryl Hydrocarbon ReceptorJinfeng Zhao, Yinghua Chen, Yue Guan, Baoai Wu, Yingxiu Jia, yicun Song · 2024 · SSRN Electronic Journal
- Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concernCong Ji, Junbin Jack Shao · 2024 · Heliyon
- PRC1 Protein Subcomplexes Architecture: Focus on the Interplay between Distinct PCGF Subunits in Protein Interaction NetworksNayla Munawar, Kieran J. Wynne, Giorgio Oliviero · 2024 · International Journal of Molecular Sciences
- BRCA1 is a molecular correlate of cell proliferation in human brain development and in Group 3 and 4 medulloblastomaIan Cheong, Xing-Han Sun, Leo Lau, Nishka Kishore, Andrea Senff‐Ribeiro, A. Díaz-Navarro, Hana Hajari, Ellen Mak, Rhea Ahluwalia, Luca Bianchini et al. · 2025 · bioRxiv
- CRISPR-Cas9 genetic screens reveal regulation of TMPRSS2 by the Elongin BC-VHL complexIldar Gabaev, Alexandra Rowland, Emilija Jovanovic, Christian M. Gawden‐Bone, Thomas W. M. Crozier, Ana Teixeira-Silva, Edward J. D. Greenwood, Pehuén Pereyra Gerber, Niek Wit, James A. Nathan et al. · 2025 · Scientific Reports
- Epigenetic genes are differentially methylated in the blood of persons with mild cognitive impairment and Alzheimer’s diseaseSamuel G. Faasen, Ligia Assumpção Papale, Alexander E. Boruch, Phillip E. Bergmann, Kirk J. Hogan, Reid S. Alisch · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Single-Cell Heterogeneity of Epigenetic Factor Regulation Deciphers Alteration of RNA Metabolism During Proliferative SHH-MedulloblastomaRaquel Francés, Jenny Bonifacio-Mundaca, Íñigo Casafont, Christophe Desterke, Jorge Mata-Garrido · 2025 · Cancers
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- Additional file 7 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 1 of Longitudinal analysis of healthy colon establishes aspirin as a suppressor of cancer-related epigenetic agingFaiza Noreen, Anna Chaber-Ciopinska, Jarosław Reguła, Primo Schär, Kaspar Truninger · 2020 · Figshare
- Additional file 5 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 1 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 6 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 2 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 1 of Development and validation of epigenetic modification-related signals for the diagnosis and prognosis of colorectal cancerLi, Xia, Li, Jingjing, Jie Li, Liu, Nannan, 庄丽维 · 2024 · Figshare
- Additional file 8 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 4 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 1 of p113 isoform encoded by CUX1 circular RNA drives tumor progression via facilitating ZRF1/BRD4 transactivationYang, Feng, Anpei Hu, Guo, Yanhua, Wang, Jianqun, Li, Dan, Wang, Xiaojing, Jin, Shikai, Boling Yuan, Cai, Shuang, Zhou, Yi et al. · 2021 · Figshare
- Additional file 3 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, Jennifer B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
- Additional file 2 of Development and validation of epigenetic modification-related signals for the diagnosis and prognosis of colorectal cancerLi, Xia, Li, Jingjing, Jie Li, Nannan Liu, Zhuang, Liwei · 2024 · Figshare
- Additional file 9 of Phthalates impact on the epigenetic factors contributed specifically by the father at fertilizationSwanson, G. M., Feiby L. Nassan, James B. Ford, Russ B. Hauser, Jonathan Richard Pilsner, Krawetz, S. A. · 2024 · Figshare
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