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Complete Genome Structure of the Thermophilic Cyanobacterium Thermosynechococcus elongatus BP-1

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Nakamura, Y.·2002·DNA Research

DOI 10.1093/dnares/9.4.123

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Abstract

The entire genome of a thermophilic unicellular cyanobacterium, Thermosynechococcus elongatus BP-1, was sequenced. The genome consisted of a circular chromosome 2,593,857 bp long, and no plasmid was detected. A total of 2475 potential protein-encoding genes, one set of rRNA genes, 42 tRNA genes representing 42 tRNA species and 4 genes for small structural RNAs were assigned to the chromosome by similarity search and computer prediction. The translated products of 56% of the potential protein-encoding genes showed sequence similarity to experimentally identified and predicted proteins of known function, and the products of 34% of these genes showed sequence similarity to the translated products of hypothetical genes. The remaining 10% lacked significant similarity to genes for predicted proteins in the public DNA databases. Sixty-three percent of the T. elongatus genes showed significant sequence similarity to those of both Synechocystis sp. PCC 6803 and Anabaena sp. PCC 7120, while 22% of the genes were unique to this species, indicating a high degree of divergence of the gene information among cyanobacterial strains. The lack of genes for typical fatty acid desaturases and the presence of more genes for heat-shock proteins in comparison with other mesophilic cyanobacteria may be genomic features of thermophilic strains. A remarkable feature of the genome is the presence of 28 copies of group II introns, 8 of which contained a presumptive gene for maturase/reverse transcriptase. A trace of genome rearrangement mediated by the group II introns was also observed.

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Authors: Nakamura, Y.
Affiliations: Kazusa DNA Research Institute (JP)
Corresponding author: Nakamura, Y.
ORCID: Nakamura, Y.
Venue: DNA Research
Publisher: Oxford University Press (OUP)
Published: 2002-01-01
Volume: 9
Issue: 4
Pages: 123-130
ISSN: 1340-2838 (ISSN-L)
DOI: 10.1093/dnares/9.4.123
OpenAlex: W2132582054
Cited by: 352
References: 32
Citations by year: 2026: 3 · 2025: 4 · 2024: 7 · 2023: 12 · 2022: 10 · 2021: 4 · 2020: 13 · 2019: 6 · 2018: 7 · 2017: 12 · 2016: 13 · 2015: 9 · 2014: 15 · 2013: 20 · 2012: 18
FWCI: 11.01
Type: journal article
Language: en
Open access: gold
doi.org
Locations: DNA Research (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
Keywords: Thermosynechococcus elongatus BP-1, thermophilic cyanobacteria, complete genome sequence, gene prediction, group II introns, genome rearrangement, heat shock proteins, Synechocystis sp. PCC 6803, Anabaena sp. PCC 7120
MeSH terms: Cyanobacteria, Molecular Sequence Data, Photosynthesis, Genome, Bacterial, Sequence Analysis, DNA

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Complete Genome Structure of the Thermophilic Cyanobacterium Thermosynechococcus elongatus BP-1

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