Cited by 357Genomics and Phylogenetic StudiesPhotosynthetic Processes and MechanismsBacterial Genetics and Biotechnology

The DOI matches its Crossref record; 32 of the 32 references it cites were found in a registry or an index.

Complete Genome Structure of the Thermophilic Cyanobacterium Thermosynechococcus elongatus BP-1

Open access

Nakamura, Y.·2002·DNA Research

DOI 10.1093/dnares/9.4.123

Open this paper in CoChat — free account

Abstract

The entire genome of a thermophilic unicellular cyanobacterium, Thermosynechococcus elongatus BP-1, was sequenced. The genome consisted of a circular chromosome 2,593,857 bp long, and no plasmid was detected. A total of 2475 potential protein-encoding genes, one set of rRNA genes, 42 tRNA genes representing 42 tRNA species and 4 genes for small structural RNAs were assigned to the chromosome by similarity search and computer prediction. The translated products of 56% of the potential protein-encoding genes showed sequence similarity to experimentally identified and predicted proteins of known function, and the products of 34% of these genes showed sequence similarity to the translated products of hypothetical genes. The remaining 10% lacked significant similarity to genes for predicted proteins in the public DNA databases. Sixty-three percent of the T. elongatus genes showed significant sequence similarity to those of both Synechocystis sp. PCC 6803 and Anabaena sp. PCC 7120, while 22% of the genes were unique to this species, indicating a high degree of divergence of the gene information among cyanobacterial strains. The lack of genes for typical fatty acid desaturases and the presence of more genes for heat-shock proteins in comparison with other mesophilic cyanobacteria may be genomic features of thermophilic strains. A remarkable feature of the genome is the presence of 28 copies of group II introns, 8 of which contained a presumptive gene for maturase/reverse transcriptase. A trace of genome rearrangement mediated by the group II introns was also observed.

Integrity signals

Registry

Crossref · 10.1093/dnares/9.4.123

Cites

32 of 32 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Lowe, T. M., & Eddy, S. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.5.955 · Cited by 11,200
Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution
Jordan, P., Fromme, P., Witt, H. T., Klukas, O., Saenger, W., & Krauß, N. (2001) · Nature · doi:10.1038/35082000 · Cited by 2,494
Improved microbial gene identification with GLIMMER
Delcher, A. L. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.23.4636 · Cited by 2,493
Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions (Supplement)
Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., et al. (1996) · DNA Research · doi:10.1093/dnares/3.3.185 · Cited by 2,434
Self-citation
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 Å resolution
Zouni, A., Witt, H. T., Kern, J. F., Fromme, P., Krauß, N., Saenger, W., & Orth, P. (2001) · Nature · doi:10.1038/35055589 · Cited by 1,946
Asymmetric substitution patterns in the two DNA strands of bacteria
Lobry, J. R. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025626 · Cited by 766
Complete Genomic Sequence of the Filamentous Nitrogen-fixing Cyanobacterium Anabaena sp. Strain PCC 7120
Kaneko, T. (2001) · DNA Research · doi:10.1093/dnares/8.5.205 · Cited by 696
Functions of the gene products of Escherichia coli
Riley, M. A. (1993) · Microbiological Reviews · doi:10.1128/mr.57.4.862-952.1993 · Cited by 367
Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence Features in the 1 Mb Region from Map Positions 64% to 92% of the Genome
Kaneko, T. (1995) · DNA Research · doi:10.1093/dnares/2.4.153 · Cited by 302
Detection of Seven Major Evolutionary Lineages in Cyanobacteria Based on the 16S rRNA Gene Sequence Analysis with New Sequences of Five Marine Synechococcus Strains
Honda, D., Yokota, A., & Sugiyama, J. (1999) · Journal of Molecular Evolution · doi:10.1007/pl00006517 · Cited by 256

Show all 32 references

Sorted by citations

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
Rocap, G., Larimer, F. W., Lamerdin, J. E., Malfatti, S., Chain, P., Ahlgren, N. A., Arellano, A., Coleman, M. L., Hauser, L., Hess, W. R., et al. (2003) · Nature · doi:10.1038/nature01947 · Cited by 1,205
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-Å resolution
Kamiya, N., & Shen, J. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0135651100 · Cited by 1,157
Handbook of Photosynthesis
Pessarakli, M. (2005) · CRC Press eBooks · doi:10.1201/9781420027877 · Cited by 837
Improving the coverage of the cyanobacterial phylum using diversity driven genome sequencing
Shih, P. M., Wu, D., Latifi, A., Axen, S. D., Fewer, D. P., Talla, E., Calteau, A., Cai, F., Tandeau de Marsac, N., Rippka, R., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1217107110 · Cited by 800
Group II Introns: Mobile Ribozymes that Invade DNAPreprint
Lambowitz, A. M., & Zimmerly, S. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a003616 · Cited by 495
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
Dufresne, A., Salanoubat, M., Partensky, F., Artiguenave, F., Axmann, I. M. I., Barbe, V., Duprat, S., Galperin, M. Y., Koonin, E. V., Gall, F. L., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1733211100 · Cited by 469
Mobile Group II Introns
Lambowitz, A. M., & Zimmerly, S. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.091600 · Cited by 460
Accurate and complete genomes from metagenomes
Chen, L.-X., Anantharaman, K., Shaiber, A., Eren, A. M., & Banfield, J. F. (2020) · Genome Research · doi:10.1101/gr.258640.119 · Cited by 401
The cyanobacterial genome core and the origin of photosynthesis
Mulkidjanian, A. Y., Koonin, E. V., Makarova, K. S., Mekhedov, S. L., Sorokin, A. V., Wolf, Y. I., Dufresne, A., Partensky, F., Burd, H., Kaznadzey, D., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605709103 · Cited by 325
Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics
Donadio, S., Monciardini, P., & Sosio, M. (2007) · Natural Product Reports · doi:10.1039/b514050c · Cited by 318
A structural phylogenetic map for chloroplast photosynthesis
Allen, J. F., de Paula, W. B. M., Puthiyaveetil, S., & Nield, J. (2011) · Trends in Plant Science · doi:10.1016/j.tplants.2011.10.004 · Cited by 292
Complete Genome Structure of Gloeobacter violaceus PCC 7421, a Cyanobacterium that Lacks Thylakoids
Nakamura, Y. (2003) · DNA Research · doi:10.1093/dnares/10.4.137 · Cited by 292
Self-citation
Complete Genomic Structure of the Bloom-forming Toxic Cyanobacterium Microcystis aeruginosa NIES-843
Kaneko, T., Nakajima, N., Okamoto, S., Suzuki, I., Tanabe, Y., Tamaoki, M., Nakamura, Y., Kasai, F., Watanabe, A., Kawashima, K., et al. (2007) · DNA Research · doi:10.1093/dnares/dsm026 · Cited by 284
Self-citation
New Insights into Type II NAD(P)H:Quinone Oxidoreductases
Melo, A. M. P., Bandeiras, T. M., & Teixeira, M. S. (2004) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.68.4.603-616.2004 · Cited by 270
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
Martin, D. M. A., Berriman, M., & Barton, G. J. (2004) · BMC Bioinformatics · doi:10.1186/1471-2105-5-178 · Cited by 245
Complete Sequence and Analysis of the Plastid Genome of the Unicellular Red Alga Cyanidioschyzon merolae
Ohta, N. (2003) · DNA Research · doi:10.1093/dnares/10.2.67 · Cited by 221
Evolution of group II introns
Zimmerly, S., & Semper, C. (2015) · Mobile DNA · doi:10.1186/s13100-015-0037-5 · Cited by 189
Novel Insights into the Enzymology, Regulation and Physiological Functions of Light-dependent Protochlorophyllide Oxidoreductase in Angiosperms
Masuda, T., & Takamiya, K.-I. (2004) · Photosynthesis Research · doi:10.1023/b:pres.0000028392.80354.7c · Cited by 189
Self-organized photosynthetic nanoparticle for cell-free hydrogen production
Iwuchukwu, I. J., Vaughn, M. D., Myers, N., O’Neill, H., Frymier, P. D., & Bruce, B. D. (2009) · Nature Nanotechnology · doi:10.1038/nnano.2009.315 · Cited by 185
The Whole-genome Sequencing of the Obligate Intracellular Bacterium Orientia tsutsugamushi Revealed Massive Gene Amplification During Reductive Genome Evolution
Nakayama, K., Yamashita, A., Kurokawa, K., Morimoto, T., Ogawa, M., Fukuhara, M., Urakami, H., Ohnishi, M., Uchiyama, I., Ogura, Y., et al. (2008) · DNA Research · doi:10.1093/dnares/dsn011 · Cited by 182
Structure of cyanobacterial Photosystem I
Grotjohann, I., & Fromme, P. (2005) · Photosynthesis Research · doi:10.1007/s11120-005-1440-4 · Cited by 178
A perspective on biotechnological applications of thermophilic microalgae and cyanobacteria
Patel, A., Μάτσακας, Λ., Rova, U., & Christakopoulos, P. (2019) · Bioresource Technology · doi:10.1016/j.biortech.2019.01.063 · Cited by 175
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
Welsh, E. A., Liberton, M., Stöckel, J., Loh, T., Elvitigala, T. R., Wang, C., Wollam, A., Fulton, R. S., Clifton, S. W., Jacobs, J., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0805418105 · Cited by 171
Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism
Uéda, K. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh830 · Cited by 169
Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits
Larsson, J., Nylander, J. A. A., & Bergman, B. (2011) · BMC Evolutionary Biology · doi:10.1186/1471-2148-11-187 · Cited by 177
Structure of a Cyanobacterial BLUF Protein, Tll0078, Containing a Novel FAD-binding Blue Light Sensor Domain
Kita, A., Okajima, K., Morimoto, Y., Ikeuchi, M., & Miki, K. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.03.067 · Cited by 153
Comparative and Functional Genomics of Anoxygenic Green Bacteria from the Taxa Chlorobi, Chloroflexi, and Acidobacteria
Bryant, D. A., Liu, Z., Li, T., Zhao, F., Costas, A. M. G., Klatt, C. G., Ward, D. M., Frigaard, N., & Overmann, J. (2011) · Advances in photosynthesis and respiration · doi:10.1007/978-94-007-1533-2_3 · Cited by 151
Cyanobacterial Phytochrome-like PixJ1 Holoprotein Shows Novel Reversible Photoconversion Between Blue- and Green-absorbing Forms
Yoshihara, S., Katayama, M., Geng, X., & Ikeuchi, M. (2004) · Plant and Cell Physiology · doi:10.1093/pcp/pch214 · Cited by 151
Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution
Lambowitz, A. M., & Belfort, M. (2015) · Microbiology Spectrum · doi:10.1128/microbiolspec.mdna3-0050-2014 · Cited by 149
Cyanobacterial Two-Component Proteins: Structure,Diversity, Distribution, andEvolution
Ashby, M. K., & Houmard, J. (2006) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00046-05 · Cited by 137
Biochemical and Functional Characterization of BLUF-Type Flavin-Binding Proteins of Two Species of Cyanobacteria
Okajima, K., Yoshihara, S., Fukushima, Y., Geng, X., Katayama, M., Higashi, S., Watanabe, M., Sato, S., Tabata, S., Shibata, Y., et al. (2005) · The Journal of Biochemistry · doi:10.1093/jb/mvi089 · Cited by 135
The Membrane-Associated CpcG2-Phycobilisome in Synechocystis: A New Photosystem I Antenna
Kondo, K., Ochiai, Y., Katayama, M., & Ikeuchi, M. (2007) · PLANT PHYSIOLOGY · doi:10.1104/pp.107.099267 · Cited by 134
Growing green electricity: Progress and strategies for use of Photosystem I for sustainable photovoltaic energy conversion
Nguyen, K., & Bruce, B. D. (2014) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2013.12.013 · Cited by 132
A novel DNA modification by sulphur
Zhou, X., He, X., Liang, J., Li, A., Xu, T., Kieser, T., Helmann, J. D., & Deng, Z. (2005) · Molecular Microbiology · doi:10.1111/j.1365-2958.2005.04764.x · Cited by 131
Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39
Fujisawa, T., Narikawa, R., Okamoto, S., Ehira, S., Yoshimura, H., Suzuki, I., Masuda, T., Mochimaru, M., Takaichi, S., Awai, K., et al. (2010) · DNA Research · doi:10.1093/dnares/dsq004 · Cited by 128
A cyanobacterial circadian timing mechanism.
Ditty, J., Williams, S., & Golden, S. (2003) · Annual Review of Genetics · doi:10.1146/annurev.genet.37.110801.142716 · Cited by 122
The future of metabolic phytochemistry: Larger numbers of metabolites, higher resolution, greater understanding
Fernie, A. R. (2007) · Phytochemistry · doi:10.1016/j.phytochem.2007.07.010 · Cited by 119
The Cyanobacteriochrome, TePixJ, Isomerizes Its Own Chromophore by Converting Phycocyanobilin to Phycoviolobilin
Ishizuka, T., Kamiya, A., Suzuki, H., Narikawa, R., Noguchi, T., Kohchi, T., Inomata, K., & Ikeuchi, M. (2011) · Biochemistry · doi:10.1021/bi101626t · Cited by 113
Evidence that D1 Processing Is Required for Manganese Binding and Extrinsic Protein Assembly into Photosystem II
Roose, J. L., & Pakrasi, H. B. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m408458200 · Cited by 112
Alcohol dehydrogenases from thermophilic and hyperthermophilic archaea and bacteria
Radianingtyas, H., & Wright, P. C. (2003) · FEMS Microbiology Reviews · doi:10.1016/s0168-6445(03)00068-8 · Cited by 112
Rhythmic ring–ring stacking drives the circadian oscillator clockwise
Chang, Y.-G., Tseng, R., Kuo, N.-W., & LiWang, A. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1211508109 · Cited by 110
Bacterial group II introns: not just splicing
Toro, N., Jiménez-Zurdo, J. I., & García-Rodríguez, F. M. (2007) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2007.00068.x · Cited by 112
A diversity of uncharacterized reverse transcriptases in bacteria
Simon, D. M., & Zimmerly, S. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn867 · Cited by 111
Microbial Community Metabolic Modeling: A Community Data‐Driven Network Reconstruction
Henry, C. S., Bernstein, H. C., Weisenhorn, P. B., Taylor, R. C., Lee, J., Zucker, J., & Song, H. (2016) · Journal of Cellular Physiology · doi:10.1002/jcp.25428 · Cited by 108
Cyanobacteriochrome SesA Is a Diguanylate Cyclase That Induces Cell Aggregation in Thermosynechococcus
Enomoto, G., Nomura, R., Shimada, T., Win, N. N., Narikawa, R., & Ikeuchi, M. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.583674 · Cited by 106
Phylogeny and taxonomy of Synechococcus-like cyanobacteria
Komárek, J., Johansen, J. R., Šmarda, J., & Strunecký, O. (2020) · Fottea · doi:10.5507/fot.2020.006 · Cited by 104
The Histidine Kinase Hik34 Is Involved in Thermotolerance by Regulating the Expression of Heat Shock Genes in Synechocystis
Suzuki, I., Kanesaki, Y., Hayashi, H., Hall, J. J., Simon, W. J., Slabas, A. R., & Murata, N. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.104.059097 · Cited by 99
ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs
Dai, L., & Zimmerly, S. (2003) · RNA · doi:10.1261/rna.2126203 · Cited by 98
The bacterial counterparts of plant phototropins
Losi, A. (2004) · Photochemical & Photobiological Sciences · doi:10.1039/b400728j · Cited by 97
ω-Amino Acid:Pyruvate Transaminase from Alcaligenes denitrificans Y2k-2: a New Catalyst for Kinetic Resolution of β-Amino Acids and Amines
Yun, H., Lim, S., Cho, B., & Kim, B. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.4.2529-2534.2004 · Cited by 96
Bacteria and Archaea Group II introns: additional mobile genetic elements in the environment
Toro, N. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00398.x · Cited by 95
The Role of the Flavodiiron Proteins in Microbial Nitric Oxide Detoxification
Saraiva, L. M., Vicente, J. B., & Teixeira, M. S. (2004) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/s0065-2911(04)49002-x · Cited by 92
Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties
Simon, D. M., Clarke, N. A. C., McNeil, B. A., Johnson, I., Pantuso, D., Dai, L., Chai, D., & Zimmerly, S. (2008) · RNA · doi:10.1261/rna.1056108 · Cited by 88
Crystallographic and Mutational Studies of Mycobacterium tuberculosis recA Mini-inteins Suggest a Pivotal Role for a Highly Conserved Aspartate Residue
Roey, P. V., Pereira, B., Li, Z., Hiraga, K., Belfort, M., & Derbyshire, V. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.12.050 · Cited by 87
Protein interactions limit the rate of evolution of photosynthetic genes in cyanobacteria.
Shi, T., Bibby, T., Jiang, L., Irwin, A., & Falkowski, P. (2005) · Molecular biology and evolution · doi:10.1093/molbev/msi216 · Cited by 84
Signature proteins for the major clades of Cyanobacteria
Gupta, R. S., & Mathews, D. W. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-24 · Cited by 84
Cyanobacteria: Applications in Biotechnology
Kumar, J., Singh, D., Tyagi, M. B., & Kumar, A. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-814667-5.00016-7 · Cited by 93
Learning to live together: mutualism between self-splicing introns and their hosts
Edgell, D. R., Chalamcharla, V. R., & Belfort, M. (2011) · BMC Biology · doi:10.1186/1741-7007-9-22 · Cited by 84
Functional Analysis of Three Sulfide:Quinone Oxidoreductase Homologs in Chlorobaculum tepidum
Chan, L., Morgan‐Kiss, R. M., & Hanson, T. E. (2008) · Journal of Bacteriology · doi:10.1128/jb.01154-08 · Cited by 84
Isolation, subunit composition and interaction of the NDH-1 complexes from Thermosynechococcus elongatus BP-1
Zhang, P., Battchikova, N., Paakkarinen, V., Katoh, H., Iwai, M., Ikeuchi, M., Pakrasi, H. B., Ogawa, T., & Aro, E. (2005) · Biochemical Journal · doi:10.1042/bj20050390 · Cited by 83
Diversification of Bacterial Community Composition along a Temperature Gradient at a Thermal Spring
Everroad, R. C., Otaki, H., Matsuura, K., & Haruta, S. (2012) · Microbes and Environments · doi:10.1264/jsme2.me11350 · Cited by 82
Exploitation of genomic sequences in a systematic analysis to access how cyanobacteria sense environmental stress
Murata, N., & Suzuki, I. (2005) · Journal of Experimental Botany · doi:10.1093/jxb/erj005 · Cited by 82
Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization
Sugita, C., Ogata, K., Shikata, M., Jikuya, H., Takano, J., Furumichi, M., Kanehisa, M., Omata, T., Sugiura, M., & Sugita, M. (2007) · Photosynthesis Research · doi:10.1007/s11120-006-9122-4 · Cited by 80
Thermosynechococcaceae as a source of thermostable C-phycocyanins: properties and molecular insights
Liang, Y., Kaczmarek, M. B., Kasprzak, A., Tang, J., Shah, M. M. R., Jin, P. K., Klepacz-Smółka, A., Cheng, J. J., Ledakowicz, S., & Daroch, M. (2018) · Algal Research · doi:10.1016/j.algal.2018.08.037 · Cited by 80
Improved Genetic Transformation of the Thermophilic Cyanobacterium, Thermosynechococcus elongatus BP-1
Iwai, M., Katoh, H., Katayama, M., & Ikeuchi, M. (2004) · Plant and Cell Physiology · doi:10.1093/pcp/pch015 · Cited by 80
The Asymmetric IscA Homodimer with an Exposed [2Fe-2S] Cluster Suggests the Structural Basis of the Fe-S Cluster Biosynthetic Scaffold
Morimoto, K., Yamashita, E., Kondou, Y., Lee, S. J., Arisaka, F., Tomitake Tsukihara, A., & Nakai, M. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.04.067 · Cited by 81
Cyanobacterial Non-mevalonate Pathway
Okada, K., & Hase, T. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m500865200 · Cited by 76
Terminal oxidases of cyanobacteria
Hart, S. E., Schlarb‐Ridley, B. G., Bendall, D. S., & Howe, C. J. (2005) · Biochemical Society Transactions · doi:10.1042/bst0330832 · Cited by 76
A niche for cyanobacteria producing chlorophyll f within a microbial mat
Ohkubo, S., & Miyashita, H. (2017) · The ISME Journal · doi:10.1038/ismej.2017.98 · Cited by 76
The one-pot multienzyme (OPME) synthesis of human blood group H antigens and a human milk oligosaccharide (HMOS) with highly active Thermosynechococcus elongatus α1–2-fucosyltransferase
Zhao, C., Wu, Y., Yu, H., Shah, I. M., Li, Y., Zeng, J., Liu, B., Mills, D. A., & Chen, X. (2016) · Chemical Communications · doi:10.1039/c5cc10646j · Cited by 76
Distribution of split DnaE inteins in cyanobacteria
Caspi, J., Amitai, G., Belenkiy, O., & Pietrokovski, S. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03825.x · Cited by 72
Cellulose Accumulation and a Cellulose Synthase Gene are Responsible for Cell Aggregation in the Cyanobacterium Thermosynechococcus vulcanus RKN
Kawano, Y., Saotome, T., Ochiai, Y., Katayama, M., Narikawa, R., & Ikeuchi, M. (2011) · Plant and Cell Physiology · doi:10.1093/pcp/pcr047 · Cited by 72
Influence of Histidine-198 of the D1 subunit on the properties of the primary electron donor, P680, of photosystem II in Thermosynechococcus elongatus
Sugiura, M., Boussac, A., Noguchi, T., & Rappaport, F. (2008) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2008.01.007 · Cited by 72
A rising tide of blue‐absorbing biliprotein photoreceptors – characterization of seven such bilin‐binding GAF domains in N ostoc sp. PCC 7120
Ma, Q., Hua, H., Chen, Y., Liu, B., Kramer, A., Scheer, H., Zhao, K., & Zhou, M. (2012) · FEBS Journal · doi:10.1111/febs.12003 · Cited by 71
Thiol-Based Photocycle of the Blue and Teal Light-Sensing Cyanobacteriochrome Tlr1999
Enomoto, G., Hirose, Y., Narikawa, R., & Ikeuchi, M. (2012) · Biochemistry · doi:10.1021/bi300020u · Cited by 71
Prophage-Like Elements in Bifidobacteria: Insights from Genomics, Transcription, Integration, Distribution, and Phylogenetic Analysis
Ventura, M., Lee, J.-H., Canchaya, C. A., Zink, R., Leahy, S. C., Moreno-Muñoz, J. A., Motherway, M. O., Higgins, D. G., Fitzgerald, G. F., O’Sullivan, D. J., et al. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.12.8692-8705.2005 · Cited by 71
Characterization of phytochelatin synthase-like protein encoded by alr0975 from a prokaryote, Nostoc sp. PCC 7120
Tsuji, N., Nishikori, S., Iwabe, O., Shiraki, K., Miyasaka, H., Takagi, M., Hirata, K., & Miyamoto, K. (2004) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2004.01.122 · Cited by 70
Site-Directed Mutagenesis ofThermosynechococcus elongatusPhotosystem II: The O2-Evolving Enzyme Lacking the Redox-Active Tyrosine D
Sugiura, M., Rappaport, F., Brettel, K., Noguchi, T., Rutherford, A. W., & Boussac, A. (2004) · Biochemistry · doi:10.1021/bi048732h · Cited by 69
Characterization of true‐branching cyanobacteria from geothermal sites and hot springs of Costa Rica
Finsinger, K., Scholz, I., Serrano, A., Morales, S., Uribe‐Lorío, L., Mora, M., Sittenfeld, A., Weckesser, J., & Hess, W. R. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01467.x · Cited by 69
Antagonistic dark/light‐induced SigB/SigD, group 2 sigma factors, expression through redox potential and their roles in cyanobacteria
Imamura, S., Asayama, M., Takahashi, H., Tanaka, K., Takahashi, H., & Shirai, M. (2003) · FEBS Letters · doi:10.1016/s0014-5793(03)01188-8 · Cited by 68
Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades
Gupta, R. S. (2009) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.005678-0 · Cited by 67
A Targetron System for Gene Targeting in Thermophiles and Its Application in Clostridium thermocellum
Mohr, G., Hong, W., Zhang, J., Cui, G., Yang, Y., Cui, Q., Liu, Y.-J., & Lambowitz, A. M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0069032 · Cited by 69
Isolation and Functional Characterization of Ca2+/H+ Antiporters from Cyanobacteria
Waditee, R., Hossain, G. S., Tanaka, Y. Y., Nakamura, T., Shikata, M., Takano, J., Takabe, T., & Takabe, T. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m310282200 · Cited by 66
Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators
Lin, S., Haas, S. A., Żemojtel, T., Xiao, P., Vingron, M., & Li, R. (2010) · Gene · doi:10.1016/j.gene.2010.11.011 · Cited by 65
Comparative Analysis of Fatty Acid Desaturases in Cyanobacterial Genomes
Chi, X., Yang, Q., Zhao, F., Qin, S., Yang, Y., Shen, J., & Lin, H. (2008) · Comparative and Functional Genomics · doi:10.1155/2008/284508 · Cited by 63
Cloning, Solubilization, and Characterization of Squalene Synthase from Thermosynechococcus elongatus BP-1
Lee, S., & Poulter, C. D. (2008) · Journal of Bacteriology · doi:10.1128/jb.01939-07 · Cited by 64
Discovery and characterization of electron transfer proteins in the photosynthetic bacteria
Meyer, T. E., & Cusanovich, M. A. (2003) · Photosynthesis Research · doi:10.1023/a:1024910323089 · Cited by 64
Mining cyanobacterial genomes for genes encoding complex biosynthetic pathways
Kalaitzis, J. A., Lauro, F. M., & Neilan, B. A. (2009) · Natural Product Reports · doi:10.1039/b817074f · Cited by 63
Thermosynechococcus as a thermophilic photosynthetic microbial cell factory for CO2 utilisation
Liang, Y., Tang, J., Luo, Y., Kaczmarek, M. B., Li, X., & Daroch, M. (2019) · Bioresource Technology · doi:10.1016/j.biortech.2019.01.089 · Cited by 62
The MntC Crystal Structure Suggests that Import of Mn2+ in Cyanobacteria is Redox Controlled
Rukhman, V., Anati, R., Melamed‐Frank, M., & Adir, N. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.03.006 · Cited by 61
The beauty in small things revealed
Bryant, D. A. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1834558100 · Cited by 63
Cyanobacteria associated with hot spring travertines
Pentecost, A. (2003) · Canadian Journal of Earth Sciences · doi:10.1139/e03-075 · Cited by 61
Subfamily Organization and Phylogenetic Origin of Genes Encoding Plastid Lipid-Associated Proteins of the Fibrillin Type
Laizet, Y., Pontier, D., Mache, R., & Kuntz, M. (2004) · Journal of Genome Science and Technology · doi:10.1166/gl.2004.038 · Cited by 60
Crystal Structure of a Non-discriminating Glutamyl-tRNA Synthetase
Schulze, J. O., Masoumi, A., Nickel, D., Jahn, M., Jahn, D., Schubert, W., & Heinz, D. W. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.06.054 · Cited by 58
Circadian Rhythms in the Thermophilic Cyanobacterium Thermosynechococcus elongatus : Compensation of Period Length over a Wide Temperature Range
Onai, K., Morishita, M., Itoh, S., Okamoto, K., & Ishiura, M. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.15.4972-4977.2004 · Cited by 58
A new genomic taxonomy system for the Synechococcus collective
Salazar, V. W., Tschoeke, D. A., Swings, J., Cosenza, C. A. N., Mattoso, M., Thompson, C. C., & Thompson, F. L. (2020) · Environmental Microbiology · doi:10.1111/1462-2920.15173 · Cited by 54
Natural transformation of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1: a simple and efficient method for gene transfer
Onai, K., Morishita, M., Kaneko, T., Tabata, S., & Ishiura, M. (2003) · Molecular Genetics and Genomics · doi:10.1007/s00438-003-0953-9 · Cited by 57
Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405
Carere, C. R., Kalia, V. C., Sparling, R., Çiçek, N., & Levin, D. B. (2008) · Indian Journal of Microbiology · doi:10.1007/s12088-008-0036-z · Cited by 56
Cyanobacterial formation of intracellular Ca‐carbonates in undersaturated solutions
Cam, N., Benzerara, K., Georgelin, T., Jaber, M., Lambert, J., Poinsot, M., Skouri‐Panet, F., Moreira, D., López‐García, P., Raimbault, E., et al. (2017) · Geobiology · doi:10.1111/gbi.12261 · Cited by 56
The nonheme iron in photosystem II
Müh, F., & Zouni, A. (2013) · Photosynthesis Research · doi:10.1007/s11120-013-9926-y · Cited by 54

Authors: Nakamura, Y.
Affiliations: Kazusa DNA Research Institute (JP)
Corresponding author: Nakamura, Y.
ORCID: Nakamura, Y.
Venue: DNA Research
Publisher: Oxford University Press (OUP)
Published: 2002-01-01
Volume: 9
Issue: 4
Pages: 123-130
ISSN: 1340-2838 (ISSN-L)
DOI: 10.1093/dnares/9.4.123
OpenAlex: W2132582054
Cited by: 352
References: 32
Citations by year: 2026: 3 · 2025: 4 · 2024: 7 · 2023: 12 · 2022: 10 · 2021: 4 · 2020: 13 · 2019: 6 · 2018: 7 · 2017: 12 · 2016: 13 · 2015: 9 · 2014: 15 · 2013: 20 · 2012: 18
FWCI: 11.01
Type: journal article
Language: en
Open access: gold
doi.org
Locations: DNA Research (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
Keywords: Thermosynechococcus elongatus BP-1, thermophilic cyanobacteria, complete genome sequence, gene prediction, group II introns, genome rearrangement, heat shock proteins, Synechocystis sp. PCC 6803, Anabaena sp. PCC 7120
MeSH terms: Cyanobacteria, Molecular Sequence Data, Photosynthesis, Genome, Bacterial, Sequence Analysis, DNA

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Complete Genome Structure of the Thermophilic Cyanobacterium Thermosynechococcus elongatus BP-1

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Citations

Cites

Cited by

Related

Metadata

Record

About these checks