Impact of poplar-based phytomanagement on soil properties and microbial communities in a metal-contaminated site

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner, F. O. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1219 · Cited by 33,055 · see citing works

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 20,966 · see citing works

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00062-07 · Cited by 19,770 · see citing works

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., Huber, T., Dalevi, D., Hu, P., & Andersen, G. L. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.03006-05 · Cited by 10,891 · see citing works

Going back to the roots: the microbial ecology of the rhizosphere

Philippot, L., Raaijmakers, J. M., Lemanceau, P., & van der Putten, W. H. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro3109 · Cited by 3,925 · see citing works

Global diversity and geography of soil fungi

Tedersoo, L., Bahram, M., Põlme, S., Kõljalg, U., Yorou, N. S., Wijesundera, R., Villarreal‐Ruiz, L., Vasco‐Palacios, A. M., Thu, P. Q., Suija, A., et al. (2014) · Science · doi:10.1126/science.1256688 · Cited by 3,714 · see citing works

UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi

Kõljalg, U., Larsson, K., Abarenkov, K., Nilsson, R. H., Alexander, I. J., Eberhardt, U., Erland, S., Høiland, K., Kjøller, R., Larsson, E., et al. (2005) · New Phytologist · doi:10.1111/j.1469-8137.2005.01376.x · Cited by 1,162 · see citing works

The contribution of arbuscular mycorrhizal fungi in sustainable maintenance of plant health and soil fertility

Jeffries, P., Gianinazzi, S., Perotto, S., Turnau, K., & Barea, J. M. (2003) · Biology and Fertility of Soils · doi:10.1007/s00374-002-0546-5 · Cited by 1,091 · see citing works

The mycorrhiza helper bacteria revisited

Frey‐Klett, P., Garbaye, J., & Tarkka, M. T. (2007) · New Phytologist · doi:10.1111/j.1469-8137.2007.02191.x · Cited by 972 · see citing works

Efficient soil microorganisms: A new dimension for sustainable agriculture and environmental development

Singh, J. S., Pandey, V. C., & Singh, D. P. (2011) · Agriculture Ecosystems & Environment · doi:10.1016/j.agee.2011.01.017 · Cited by 890 · see citing works

Plants, mycorrhizal fungi, and bacteria: a network of interactions.

Bonfante, P., & Anca, I. (2009) · Annual Review of Microbiology · doi:10.1146/annurev.micro.091208.073504 · Cited by 796 · see citing works

Phytoremediation of heavy metals assisted by plant growth promoting (PGP) bacteria: A review

Ullah, A., Heng, S., Munis, M. F. H., Fahad, S., & Yang, X. (2015) · Environmental and Experimental Botany · doi:10.1016/j.envexpbot.2015.05.001 · Cited by 714 · see citing works

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

Gottel, N., Castro, H. F., Kerley, M. K., Yang, Z. K., Pelletier, D. A., Podar, M., Karpinets, T. V., Uberbacher, E., Tuskan, G. A., Vilgalys, R. J., et al. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.05255-11 · Cited by 548 · see citing works

Lignin‐modifying enzymes in filamentous basidiomycetes – ecological, functional and phylogenetic review

Lundell, T., Mäkelä, M., & Hildén, K. (2010) · Journal of Basic Microbiology · doi:10.1002/jobm.200900338 · Cited by 475 · see citing works

Streptomyces as symbionts: an emerging and widespread theme?

Seipke, R. F., Kaltenpoth, M., & Hutchings, M. I. (2011) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2011.00313.x · Cited by 418 · see citing works

Microbial Community Succession in an Unvegetated, Recently Deglaciated Soil

Nemergut, D. R., Anderson, S. P., Cleveland, C. C., Martin, A. P., Miller, A. E., Seimon, A., & Schmidt, S. K. (2006) · Microbial Ecology · doi:10.1007/s00248-006-9144-7 · Cited by 400 · see citing works

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

Shakya, M., Gottel, N., Castro, H. F., Yang, Z. K., Gunter, L. E., Labbé, J., Muchero, W., Bonito, G. M., Vilgalys, R. J., Tuskan, G. A., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0076382 · Cited by 308 · see citing works

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Bonito, G. M., Reynolds, H., Robeson, M. S., Nelson, J., Hodkinson, B. P., Tuskan, G. A., Schadt, C. W., & Vilgalys, R. J. (2014) · Molecular Ecology · doi:10.1111/mec.12821 · Cited by 295 · see citing works

The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils

Schmidt, S. K., Reed, S. C., Nemergut, D. R., Grandy, A. S., Cleveland, C. C., Weintraub, M. N., Hill, A. W., Costello, E. K., Meyer, A. F., Neff, J. C., et al. (2008) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2008.0808 · Cited by 284 · see citing works

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

Yergeau, É., Sanschagrin, S., Maynard, C., St‐Arnaud, M., & Greer, C. W. (2013) · The ISME Journal · doi:10.1038/ismej.2013.163 · Cited by 243 · see citing works

Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil

Tardy, V., Spor, A., Mathieu, O., Lévèque, J., Terrat, S., Plassart, P., Régnier, T., Bardgett, R. D., van der Putten, W. H., Roggero, P. P., et al. (2015) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2015.08.010 · Cited by 236 · see citing works

ECTOMYCORRHIZAL FUNGAL COMMUNITY STRUCTURE OF PINYON PINES GROWING IN TWO ENVIRONMENTAL EXTREMES

Gehring, C. A., Theimer, T. C., Whitham, T. G., & Keim, P. (1998) · Ecology · doi:10.1890/0012-9658(1998)079[1562:efcsop]2.0.co;2 · Cited by 226 · see citing works

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

Bell, T. H., Hassan, S. E., Lauron‐Moreau, A., Alotaibi, F., Hijri, M., Yergeau, É., & St‐Arnaud, M. (2013) · The ISME Journal · doi:10.1038/ismej.2013.149 · Cited by 213 · see citing works

Pyrosequencing evidences the impact of cropping on soil bacterial and fungal diversity in Laos tropical grassland

Lienhard, P., Terrat, S., Prévost‐Bouré, N. C., Nowak, V., Régnier, T., Sayphoummie, S., Panyasiri, K., Tivet, F. E., Mathieu, O., Levêque, J., et al. (2013) · Agronomy for Sustainable Development · doi:10.1007/s13593-013-0162-9 · Cited by 179 · see citing works

Wood-inhabiting ligninolytic basidiomycetes in soils: Ecology and constraints for applicability in bioremediation

Baldrián, P. (2008) · Fungal ecology · doi:10.1016/j.funeco.2008.02.001 · Cited by 176 · see citing works

Microbial community composition and functions are resilient to metal pollution along two forest soil gradients

Azarbad, H., Niklińska, M., Laskowski, R., van Straalen, N. M., van Gestel, C. A. M., Zhou, J. Z., He, Z., Wen, C., & Röling, W. F. M. (2014) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiu003 · Cited by 166 · see citing works

Bacterial communities associated with four ctenophore genera from the German Bight (North Sea)

Hao, W., Gerdts, G., Peplies, J., & Wichels, A. (2014) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiu006 · Cited by 145 · see citing works

High Diversity of Diazotrophs in the Forefield of a Receding Alpine Glacier

Duc, L., Noll, M., Meier, B. E., Bürgmann, H., & Zeyer, J. (2008) · Microbial Ecology · doi:10.1007/s00248-008-9408-5 · Cited by 142 · see citing works

Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants

Trujillo, M. E., Riesco, R., Benito, P., & Carro, L. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01341 · Cited by 132 · see citing works

Heavy metals and woody plants - biotechnologies for phytoremediation

Capuana, M. (2011) · iForest - Biogeosciences and Forestry · doi:10.3832/ifor0555-004 · Cited by 122 · see citing works

V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16 S/18 S) ribosomal RNA gene sequences

Hartmann, M., Howes, C. G., Abarenkov, K., Mohn, W. W., & Nilsson, R. H. (2010) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2010.08.008 · Cited by 117 · see citing works

Metal accumulation by woody species on contaminated sites in the north of France

Migeon, A., Richaud, P., Guinet, F., Chalot, M., & Blaudez, D. (2009) · Water, Air, and Soil Pollution · doi:10.1007/s11270-009-0029-5 · Cited by 115 · see citing works

Pezizalean mycorrhizas and sporocarps in ponderosa pine (Pinus ponderosa) after prescribed fires in eastern Oregon, USA

Fujimura, K. E., Smith, J. E., Horton, T. R., Weber, N. S., & Spatafora, J. W. (2004) · Mycorrhiza · doi:10.1007/s00572-004-0303-8 · Cited by 111 · see citing works

Poplar and its Bacterial Endophytes: Coexistence and Harmony

van der Lelie, D., Taghavi, S., Monchy, S., Schwender, J., Miller, L. M., Ferrieri, R. A., Rogers, A., Wu, X. B., Zhu, W., Weyens, N., et al. (2009) · Critical Reviews in Plant Sciences · doi:10.1080/07352680903241204 · Cited by 111 · see citing works

Effects of short rotation coppice with willows and poplar on soil ecology

Baum, C., Leinweber, P., Weih, M., Lamersdorf, N. P., & Dimitriou, I. (2009) · OpenAgrar · Cited by 109 · see citing works

Tree species effect on the redistribution of soil metals

Mertens, J., Van Nevel, L., De Schrijver, A., Piesschaert, F., Oosterbaan, A., Tack, F. M. G., & Verheyen, K. (2007) · Environmental Pollution · doi:10.1016/j.envpol.2007.01.002 · Cited by 105 · see citing works

Multiple impacts of the plant growth-promoting rhizobacterium Variovorax paradoxus 5C-2 on nutrient and ABA relations of Pisum sativum

Jiang, F., Chen, L., Алексеевич, Б. А., Shaposhnikov, A. I., Gong, F., Meng, X., Hartung, W., Jeschke, D., Davies, W. J., & Dodd, I. C. (2012) · Journal of Experimental Botany · doi:10.1093/jxb/ers301 · Cited by 105 · see citing works

Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities

Danielsen, L. S., Thürmer, A., Meinicke, P., Buée, M., Morin, E., Martin, F. M., Pilate, G., Daniel, R., Polle, A., & Reich, M. (2012) · Ecology and Evolution · doi:10.1002/ece3.305 · Cited by 99 · see citing works

Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1

Miller, T. R., Delcher, A. L., Salzberg, S. L., Saunders, E. H., Detter, J. C., & Halden, R. U. (2010) · Journal of Bacteriology · doi:10.1128/jb.01030-10 · Cited by 98 · see citing works

Improving nickel phytoextraction by co-cropping hyperaccumulator plants inoculated by plant growth promoting rhizobacteria

Durand, A., Piutti, S., Rue, M., Morel, J., Echevarria, G., & Benizri, É. (2015) · Plant and Soil · doi:10.1007/s11104-015-2691-2 · Cited by 94 · see citing works

Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons

Pagé, A. P., Yergeau, É., & Greer, C. W. (2015) · PLoS ONE · doi:10.1371/journal.pone.0132062 · Cited by 89 · see citing works

Soil Sustainability in Renewable Biomass Plantings

Mann, L. K., & Tolbert, V. R. (2000) · AMBIO · doi:10.1579/0044-7447-29.8.492 · Cited by 87 · see citing works

Suppression of plant defence response by a mycorrhiza helper bacterium

Lehr, N. A., Schrey, S. D., Bauer, R., Hampp, R., & Tarkka, M. T. (2007) · New Phytologist · doi:10.1111/j.1469-8137.2007.02021.x · Cited by 86 · see citing works

Invasive dreissenid mussels and benthic algae in Lake Michigan: characterizing effects on sediment bacterial communities

Lee, P. O., McLellan, S. L., Graham, L. E., & Young, E. B. (2014) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiu001 · Cited by 73 · see citing works

The mycorrhizal status of selected poplar clones introduced in Alberta

Khasa, D. P., Chakravarty, P., Robertson, A., Thomas, B. R., & Dancik, B. P. (2002) · Biomass and Bioenergy · doi:10.1016/s0961-9534(01)00072-1 · Cited by 72 · see citing works

Diversity and complexity of microbial communities from a chlor-alkali tailings dump

Zappelini, C., Karimi, B., Foulon, J., Lacercat-Didier, L., Maillard, F., Valot, B., Blaudez, D., Cazaux, D., Gilbert, D., Yergeau, É., et al. (2015) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2015.08.008 · Cited by 69 · see citing works

Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill

Bell, T. H., Cloutier‐Hurteau, B., Alotaibi, F., Turmel, M., Yergeau, É., Courchesne, F., & St‐Arnaud, M. (2015) · Environmental Microbiology · doi:10.1111/1462-2920.12900 · Cited by 67 · see citing works

Remediation of Metal Contaminated Soil by Organic Metabolites from Fungi I—Production of Organic Acids

Arwidsson, Z., Johansson, E. M. V., von Kronhelm, T., Allard, B., & van Hees, P. (2009) · Water Air & Soil Pollution · doi:10.1007/s11270-009-0067-z · Cited by 66 · see citing works

Ectomycorrhizal fungal communities associated with Salix viminalis L. and S. dasyclados Wimm. clones in a short-rotation forestry plantation

Püttsepp, Ü., Rosling, A., & Taylor, A. F. S. (2004) · Forest Ecology and Management · doi:10.1016/j.foreco.2004.04.003 · Cited by 65 · see citing works

Taxonomic and functional diversity ofStreptomycesin a forest soil

Bontemps, C., Toussaint, M., Revol, P.-V., Hôtel, L., Jeanbille, M., Uroz, S., Turpault, M., Blaudez, D., & Leblond, P. (2013) · FEMS Microbiology Letters · doi:10.1111/1574-6968.12126 · Cited by 64 · see citing works

Promotion of mycorrhiza formation and growth of willows by the bacterial strain Sphingomonas sp. 23L on fly ash

Hrynkiewicz, K., Baum, C., Niedojadło, J., & Dahm, H. (2008) · Biology and Fertility of Soils · doi:10.1007/s00374-008-0346-7 · Cited by 64 · see citing works

Impact of metal pollution on fungal diversity and community structures

Beeck, M. O. D., Lievens, B., Busschaert, P., Rineau, F., Smits, M. M., Vangronsveld, J., & Colpaert, J. V. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12547 · Cited by 63 · see citing works

New mutualistic fungal endophytes isolated from poplar roots display high metal tolerance

Lacercat-Didier, L., Berthelot, C., Foulon, J., Errard, A., Martino, E. M. D., Chalot, M., & Blaudez, D. (2016) · Mycorrhiza · doi:10.1007/s00572-016-0699-y · Cited by 61 · see citing works

Assessment of soil nitrogen and phosphorous availability under elevated CO2 and N-fertilization in a short rotation poplar plantation

Lagomarsino, A., Moscatelli, M. C., Hoosbeek, M. R., Angelis, P. D., & Grego, S. (2008) · Plant and Soil · doi:10.1007/s11104-008-9614-4 · Cited by 60 · see citing works

Fungal rock phosphate solubilization using sugarcane bagasse

Mendes, G. D. O., Dias, C. S., da Silva, I. R., Júnior, J. I. R., Pereira, O. L., & Costa, M. D. (2012) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-012-1156-5 · Cited by 58 · see citing works

Use of major‐ and trace‐element correlations to assess metal migration in sandy Luvisols irrigated with wastewater

Lamy, I., Van Oort, F., Dère, C., & Baize, D. (2006) · European Journal of Soil Science · doi:10.1111/j.1365-2389.2005.00765.x · Cited by 56 · see citing works

Brevicompanines A and B: new plant growth regulators produced by the fungus, Penicillium brevicompactum

Kusano, M., Sotoma, G., Koshino, H., Uzawa, J., Chijimatsu, M., Fujioka, S., Kawano, T., & Kimura, Y. N. (1998) · Journal of the Chemical Society Perkin Transactions 1 · doi:10.1039/a803880e · Cited by 55 · see citing works

Genotypic variations in the dynamics of metal concentrations in poplar leaves: a field study with a perspective on phytoremediation

Pottier, M., García de la Torre, V. S., Victor, C., David, L. C., Chalot, M., & Thomine, S. (2015) · Environmental Pollution · doi:10.1016/j.envpol.2015.01.010 · Cited by 47 · see citing works

Decomposition of willow-leaf litter in a short-rotation forest in relation to fungal colonization and palatability for earthworms

Šlapokas, T., & Granhall, U. (1991) · Biology and Fertility of Soils · doi:10.1007/bf00337374 · Cited by 45 · see citing works

Secondary Metabolites of Soil Streptomycetes in Biotic Interactions

Tarkka, M. T., & Hampp, R. (2008) · Soil biology · doi:10.1007/978-3-540-74543-3_6 · Cited by 38 · see citing works

Tolerance and Antioxidant Response of a Dark Septate Endophyte (DSE), Exophiala pisciphila, to Cadmium Stress

Zhan, F., He, Y., Li, T., Yang, Y.-Y., Toor, G. S., & Zhao, Z. (2014) · Bulletin of Environmental Contamination and Toxicology · doi:10.1007/s00128-014-1401-8 · Cited by 37 · see citing works

Three New Species of Cyphellophora (Chaetothyriales) Associated with Sooty Blotch and Flyspeck

Gao, L., Ma, Y., Zhao, W., Wei, Z., Gleason, M. L., Chen, H., Lu, H., Sun, G., & Zhang, R. (2015) · PLoS ONE · doi:10.1371/journal.pone.0136857 · Cited by 37 · see citing works

A new species of Exophiala associated with roots

Maciá‐Vicente, J. G., Glynou, K. M., & Piepenbring, M. (2016) · Mycological Progress · doi:10.1007/s11557-016-1161-4 · Cited by 37 · see citing works

Molecular and mycotoxin characterization of Fusarium graminearum isolates obtained from wheat at a single field in Argentina

Ortega, L. M., Dinolfo, M. I., Astoreca, A., Alberione, E. J., Stenglein, S. A., & Alconada, T. M. (2015) · Mycological Progress · doi:10.1007/s11557-015-1147-7 · Cited by 33 · see citing works

Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated Soil

Leewis, M., Uhlík, O., Fraraccio, S., McFarlin, K. M., Kottara, A., Glover, C., Macek, T., & Leigh, M. B. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00837 · Cited by 32 · see citing works

The significance of rotation periods for mycorrhiza formation in Short Rotation Coppice

Hrynkiewicz, K., Baum, C., Leinweber, P., Weih, M., & Dimitriou, I. (2010) · Forest Ecology and Management · doi:10.1016/j.foreco.2010.08.020 · Cited by 31 · see citing works

Poplar clones of different sizes, grown on a heavy metal polluted site, are associated with microbial populations of varying composition

Gamalero, E., Cesaro, P., Cicatelli, A., Todeschini, V., Musso, C., Castiglione, S., Fabiani, A., & Lingua, G. (2012) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2012.03.012 · Cited by 30 · see citing works

Developing and validating a practical decision support tool (DST) for biomass selection on marginal land

Andersson‐Sköld, Y., Bardos, P., Chalot, M., Bert, V., Crutu, G., Phanthavongsa, P., Delplanque, M., Track, T., & Cundy, A. B. (2014) · Journal of Environmental Management · doi:10.1016/j.jenvman.2014.06.012 · Cited by 30 · see citing works

Impacts of long-term waste-water irrigation on the development of sandy Luvisols: consequences for metal pollutant distributions

VanOort, F., Jongmans, A. G., Lamy, I., Baize, D., & Chevallier, P. (2008) · European Journal of Soil Science · doi:10.1111/j.1365-2389.2008.01047.x · Cited by 27 · see citing works

Ectomycorrhizal Fungal Community Structure of Pinyon Pines Growing in Two Environmental Extremes

Gehring, C. A., Theimer, T. C., Whitham, T. G., et al. (1998) · Ecology · doi:10.2307/176776 · Cited by 22 · see citing works

Microflora of technogenous wastes characterised by fatty acid profiling

Kozdrój, J. (2000) · Microbiological Research · doi:10.1016/s0944-5013(00)80028-2 · Cited by 19 · see citing works

Positive effect of the Miscanthus bioenergy crop on microbial diversity in wastewater-contaminated soil

Bourgeois, E., Dequiedt, S. S., Lelièvre, M., van Oort, F., Lamy, I., Maron, P., & Ranjard, L. (2015) · Environmental Chemistry Letters · doi:10.1007/s10311-015-0531-5 · Cited by 17 · see citing works

Improvement of xylanase production by Penicillium canescens 10-10c in solid-state fermentation

Thonart, P., Destain, J., Aldric, J., Delvigne, F., & Assamoi, A. A. (2006) · ORBi (University of Liège) · Cited by 11 · see citing works

Interactions Between Ectomycorrhizal Fungi and Rhizospheric Microbes

Reddy, M. S., & Satyanarayana, T. (2006) · Springer eBooks · doi:10.1007/3-540-29420-1_13 · Cited by 8 · see citing works

Effects of N-fertilization on shoots and roots of rape (Brassica napus L.) and consequences for the soil matric potential

Kappen, L., Schultz, G., Gruler, T., & Widmoser, P. (2000) · Journal of Plant Nutrition and Soil Science · doi:10.1002/1522-2624(200010)163:5

Intensify production, transform biomass to energy and novel goods and protect soils in Europe—A vision how to mobilize marginal lands

Schröder, P., Beckers, B., Daniels, S., Gnädinger, F., Maestri, E., Marmiroli, N., Mench, M., Millan, R., Obermeier, M. M., Oustriere, N., et al. (2018) · Science of The Total Environment · doi:10.1016/j.scitotenv.2017.10.209 · Cited by 151 · see citing works

Bacterial diversity associated with poplar trees grown on a Hg-contaminated site: Community characterization and isolation of Hg-resistant plant growth-promoting bacteria

Durand, A., Maillard, F., Álvarez‐López, V., Guinchard, S., Bertheau, C., Valot, B., Blaudez, D., & Chalot, M. (2017) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2017.12.069 · Cited by 80 · see citing works

Biodiversity in short-rotation coppice

Vanbeveren, S. P. P., & Ceulemans, R. (2019) · Renewable and Sustainable Energy Reviews · doi:10.1016/j.rser.2019.05.012 · Cited by 79 · see citing works

Phytomanagement of Metal(loid)-Contaminated Soils: Options, Efficiency and Value

Moreira, H., Pereira, S. I. A., Mench, M. J., Garbisu, C., Kidd, P., & Castro, P. M. L. (2021) · Frontiers in Environmental Science · doi:10.3389/fenvs.2021.661423 · Cited by 82 · see citing works

Beyond Cleansing: Ecosystem Services Related to Phytoremediation

Nissim, W. G., Castiglione, S., Guarino, F., Pastore, M. C., & Labra, M. (2023) · Plants · doi:10.3390/plants12051031 · Cited by 73 · see citing works

Reclamation of urban brownfields through phytoremediation: Implications for building sustainable and resilient towns

Nissim, W. G., & Labrecque, M. (2021) · Urban forestry & urban greening · doi:10.1016/j.ufug.2021.127364 · Cited by 57 · see citing works

Variation in Bacterial and Eukaryotic Communities Associated with Natural and Managed Wild Blueberry Habitats

Yurgel, S. N., Douglas, G. M., Comeau, A., Mammoliti, M., Dusault, A., Percival, D. C., & Langille, M. G. I. (2017) · Phytobiomes Journal · doi:10.1094/pbiomes-03-17-0012-r · Cited by 57 · see citing works

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Zhang, M., Huang, F., Wang, G., Liu, X., Wen, J., Zhang, X., Huang, Y., & Xia, Y. (2017) · Scientific Reports · doi:10.1038/s41598-017-00280-y · Cited by 28 · see citing works

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He, L., Xu, Y., Zhang, M., Gul, S., Zhang, X., Zhong, H., Tang, Y., Dong, D., Xu, Y., Liu, D., et al. (2024) · Critical Reviews in Environmental Science and Technology · doi:10.1080/10643389.2024.2315009 · Cited by 27 · see citing works

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Voglar, G. E., Mrak, T., Križman, M., Jagodič, A., Trdan, S., & Laznik, Ž. (2018) · Plant and Soil · doi:10.1007/s11104-018-03903-z · Cited by 9 · see citing works

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Raveau, R., Sahraoui, A. L., Hijri, M., & Fontaine, J. (2021) · Microorganisms · doi:10.3390/microorganisms9061333 · Cited by 4 · see citing works

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Kumar, V., Singh, A., Tyagi, M. B., & Kumar, A. (2017) · Springer eBooks · doi:10.1007/978-981-10-5813-4_32 · Cited by 1 · see citing works

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Pietrini, F., Iori, V., Pietrosanti, L., Passatore, L., Zuin, M. C., Aromolo, R., Capotorti, G., Massacci, A., & Zacchini, M. (2018) · Springer eBooks · doi:10.1007/978-3-319-99651-6_4 · Cited by 1 · see citing works

Full Issue PDF

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Gamalero, E., Cesaro, P., Cicatelli, A., Todeschini, V., Musso, C., Castiglione, S., Fabiani, A., & Lingua, G. (2012) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2012.03.012 · Cited by 30 · see citing works

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