The DOI matches its Crossref record; 16 of the 16 references it cites were found in a registry or an index.
Construction of the third-generation Zea mays haplotype map
Open accessAbstract
Background: Characterization of genetic variations in maize has been challenging, mainly due to deterioration of collinearity between individual genomes in the species. An international consortium of maize research groups combined resources to develop the maize haplotype version 3 (HapMap 3), built from whole-genome sequencing data from 1218 maize lines, covering predomestication and domesticated Zea mays varieties across the world. Results: A new computational pipeline was set up to process more than 12 trillion bp of sequencing data, and a set of population genetics filters was applied to identify more than 83 million variant sites. Conclusions: We identified polymorphisms in regions where collinearity is largely preserved in the maize species. However, the fact that the B73 genome used as the reference only represents a fraction of all haplotypes is still an important limiting factor.
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Cites
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The Sequence Alignment/Map format and SAMtools
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The variant call format and VCFtools
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
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An integrated map of genetic variation from 1,092 human genomes
The 1000 Genomes Project Consortium (2012) · Nature · doi:10.1038/nature11632 · Cited by 7,711
The B73 Maize Genome: Complexity, Diversity, and Dynamics
Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., et al. (2009) · Science · doi:10.1126/science.1178534 · Cited by 4,046
Self-citationStacks: Building and Genotyping Loci De Novo From Short-Read Sequences
Catchen, J. M., Amores, A., Hohenlohe, P., Cresko, W., & Postlethwait, J. H. (2011) · G3 Genes|Genomes|Genetics · doi:10.1534/g3.111.000240 · Cited by 1,932
TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
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Self-citationGenetic Properties of the Maize Nested Association Mapping Population
McMullen, M. D., Kresovich, S., Villeda, H. S., Bradbury, P., Li, H., Sun, Q., Flint-Garcia, S., Thornsberry, J., Acharya, C., Bottoms, C., et al. (2009) · Science · doi:10.1126/science.1174320 · Cited by 1,059
Self-citationMaize association population: a high‐resolution platform for quantitative trait locus dissection
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Washburn, J. D., Burch, M. B., & Franco, J. A. V. (2020) · Crop Science · doi:10.1002/csc2.20052 · Cited by 65
Cooper, M., Messina, C. D., Tang, T., Gho, C., Powell, O. M., Podlich, D. W., Technow, F., & Hammer, G. L. (2022) · Plant Breeding Reviews · doi:10.1002/9781119874157.ch8 · Cited by 56
Ramstein, G. P., & Buckler, E. S. (2022) · Genome Biology · doi:10.1186/s13059-022-02747-2 · Cited by 34
Self-citationMolecular evolution of a reproductive barrier in maize and related species
Cryan, E., Phinney, G., Seetharam, A. S., Evans, M. M. S., Kellogg, E. A., Zhan, J., Meyers, B., Kliebenstein, D. J., & Ross-Ibarra, J. (2025) · GENETICS · doi:10.1093/genetics/iyaf085 · Cited by 1
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Metadata
- Authors
- Bukowski, R., Guo, X., Lu, Y., Zou, C., He, B., Rong, Z., Wang, B., Xu, D., Yang, B., Xie, C., Fan, L., Gao, S., Xu, X., Zhang, G., Li, Y., Jiao, Y., Doebley, J. F., Ross-Ibarra, J., Lorant, A., Buffalo, V., Romay, M. C., Buckler, E. S., Ware, D., Lai, J., Sun, Q., & Xu, Y.
- Venue
- GigaScience
- Publisher
- Oxford University Press (OUP)
- Published
- 2017-12-30
- Volume
- 7
- Issue
- 4
- Pages
- 1-12
- ISSN
- 2047-217X (ISSN-L)
- OpenAlex
- W2952480515
- Cited by
- 384
- References
- 16
- FWCI
- 25.70
- Type
- journal article
- Language
- en
- Open access
- gold
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- Bukowski, R., Guo, X., Lu, Y., Zou, C., He, B., Rong, Z., Wang, B., Xu, D., Yang, B., Xie, C., Fan, L., Gao, S., Xu, X., Zhang, G., Li, Y., Jiao, Y., Doebley, J. F., Ross-Ibarra, J., Lorant, A., . . . Xu, Y. (2018). Construction of the third-generation Zea mays haplotype map. GigaScience. https://doi.org/10.1093/gigascience/gix134
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