In Vitro Reactivation of the FMR1 Gene Involved in Fragile X Syndrome
Abstract
Fragile X syndrome is the most frequent cause of heritable mental retardation. Most patients have a mutation in the 5' untranslated region of the FMR1 gene, consisting of the amplification of a polymorphic (CGG)nrepeat sequence, and cytogenetically express the folate-sensitive fragile site FRAXA in Xq27.3. Fragile X patients harbour an expanded sequence with >200 CGG repeats (full mutation), accompanied by methylation of most cytosines of the sequence itself and of the upstream CpG island. This abnormal hypermethylation of the promoter suppresses gene transcription, resulting in the absence of the FMR1 protein. Rare individuals of normal intelligence were shown to carry a completely or partially unmethylated full mutation and to express the FMR1 protein. Given this observation and knowing that the open reading frame of the mutated FMR1 gene is intact, we decided to investigate whether its activity could be restored in vitro by inducing DNA demethylation with 5-azadeoxycytidine (5-azadC) in fragile X patients' lymphoblastoid cells. We report that treatment with 5-azadC causes reactivation of fully mutated FMR1 genes with 300-800 repeats, as shown by the restoration of specific mRNA and protein production. This effect correlates with the extent of promoter demethylation, determined by restriction analysis with methylation-sensitive enzymes. These results confirm the critical role of FMR1 promoter hypermethylation in the pathogenesis of the fragile X syndrome, provide an additional explanation for the normal IQ of the rare males with unmethylated full mutations and pave the way to future attempts at pharmacologically restoring mutant FMR1 gene activity in vivo.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
5-aza-deoxycytidine restored transcription and translation of FMR1 in cells derived from patients with fragile X syndrome.
“The first compound tested on cells derived from patients with FXS was the drug 5-aza-deoxycytidine (5-azadC, a methyltransferase inhibitor; Figure 3A), which restored transcription and translation of the FMR1 gene (95).”
From Fragile X syndrome: causes, diagnosis, mechanisms, and therapeutics (2012) · cites this paper as [95]
Cites
Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction
Chomczynski, P., & Sacchi, N. (1987) · Analytical Biochemistry · doi:10.1006/abio.1987.9999 · Cited by 65,240 · see citing works
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
Chomczyński, P., & Sacchi, N. (1987) · Analytical Biochemistry · doi:10.1016/0003-2697(87)90021-2 · Cited by 47,092 · see citing works
Verkerk, A. J. M. H., Pieretti, M., Sutcliffe, J. S., Fu, Y.-H., Kuhl, D. P. A., Pizzuti, A., Reiner, O., Richards, S., Victoria, M. F., Zhang, F., et al. (1991) · Cell · doi:10.1016/0092-8674(91)90397-h · Cited by 3,481 · see citing works
Self-citationFu, Y.-H., Kuhl, D. P. A., Pizzuti, A., Pieretti, M., Sutcliffe, J. S., Richards, S., Verkert, A. J. M. H., Holden, J. J. A., Fenwick, R. G., Warren, S. T., et al. (1991) · Cell · doi:10.1016/0092-8674(91)90283-5 · Cited by 2,080 · see citing works
Self-citationAbsence of expression of the FMR-1 gene in fragile X syndrome
Pieretti, M., Zhang, F., Fu, Y.-H., Warren, S. T., Oostra, B. A., Caskey, C. T., & Nelson, D. L. (1991) · Cell · doi:10.1016/0092-8674(91)90125-i · Cited by 1,476 · see citing works
Self-citationAmerican Journal of Human Genetics
(2005) · Encyclopedia of Statistical Sciences · doi:10.1002/0471667196.ess7082.pub2 · Cited by 874 · see citing works
DNA methylation represses <i>FMR-1</i> transcription in fragile X syndrome
Sutcliffe, J. S., Nelson, D. L., Zhang, F., Pieretti, M., Caskey, C. T., Saxe, D., & Warren, S. T. (1992) · Human Molecular Genetics · doi:10.1093/hmg/1.6.397 · Cited by 680 · see citing works
A routine method for the establishment of permanent growing lymphoblastoid cell lines
Neitzel, H. (1986) · Human Genetics · doi:10.1007/bf00279094 · Cited by 647 · see citing works
An efficient salt-chloroform extraction of DNA from blood and tissues.
Müllenbach, R., Lagoda, P., & Welter, C. (1989) · PubMed · Cited by 630 · see citing works
Translational Suppression by Trinucleotide Repeat Expansion at <i>FMR1</i>
Feng, Y., Zhang, F., Lokey, L. K., Chastain, J. L., Lakkis, L., Eberhart, D., & Warren, S. T. (1995) · Science · doi:10.1126/science.7732383 · Cited by 358 · see citing works
Characterization and localization of the FMR-1 gene product associated with fragile X syndrome
Verheij, C., Bakker, C. E., de Graaff, E., Keulemans, J., Willemsen, R., Verkerk, A. J. M. H., Galjaard, H., Reuser, A. J. J., Hoogeveen, A. T., & Oostra, B. A. (1993) · Nature · doi:10.1038/363722a0 · Cited by 343 · see citing works
Self-citationHagerman, R. J., Hull, C. E., Safanda, J. F., Carpenter, I., Staley, L. W., O'Connor, R. A., Seydel, C., Mazzocco, M. M. M., Snow, K., Thibodeau, S. N., et al. (1994) · American Journal of Medical Genetics · doi:10.1002/ajmg.1320510404 · Cited by 222 · see citing works
Methylation analysis of CGG sites in the CpG island of the human FMR1 gene
Hansen, R. S., Gartler, S. M., Scott, C. R., Chen, S.-H., & xLaird, C. M. (1992) · Human Molecular Genetics · doi:10.1093/hmg/1.8.571 · Cited by 184 · see citing works
Normal phenotype in two brothers with a full FMR1 mutation
Smeets, H. J. M., Smits, A. P. T., Verheij, C. E., Theelen, J. P. G., Willemsen, R., Burgt, I. V. D., Hoogeveen, A. T., Oosterwijk, J. C., & Oostra, B. A. (1995) · Human Molecular Genetics · doi:10.1093/hmg/4.11.2103 · Cited by 179 · see citing works
Self-citationRapid antibody test for fragile X syndrome
Willemsen, R., Mohkamsing, S., de Vries, B., van den Ouweland, A., GALJAARD, H., Oostra, B. A., Devys, D., & Mandel, J. (1995) · The Lancet · doi:10.1016/s0140-6736(95)90979-6 · Cited by 178 · see citing works
Self-citationMcConkie‐Rosell, A., Lachiewicz, A. M., Spiridigliozzi, G. A., Tarleton, J. C., Schoenwald, S., Phelan, M. C., Goonewardena, P., Ding, X., & Brown, W. T. (1993) · PubMed · Cited by 168 · see citing works
Treatment with Azacitidine of Patients with End-Stage β-Thalassemia
Lowrey, C. H., & Nienhuis, A. W. (1993) · New England Journal of Medicine · doi:10.1056/nejm199309163291205 · Cited by 123 · see citing works
Molecular heterogeneity of the fragile X syndrome
Nakahori, Y., Knight, S. J. L., Holland, J., Schwartz, C. E., Roche, A., Tarleton, J. C., Wong, S., Flint, T. J., Froster‐Iskenius, U., Bentley, D. R., et al. (1991) · Nucleic Acids Research · doi:10.1093/nar/19.16.4355 · Cited by 103 · see citing works
Role of late replication timing in the silencing of X-linked genes
Hansen, R. S. (1996) · Human Molecular Genetics · doi:10.1093/hmg/5.9.1345 · Cited by 93 · see citing works
Vries, B. B. A. D., Jansen, C. C., Duits, A., Verheij, C., Willemsen, R., Hemel, J. O. V., van den Ouweland, A. M., Niermeijer, M. F., Oostra, B. A., & Halley, D. J. J. (1996) · Journal of Medical Genetics · doi:10.1136/jmg.33.12.1007 · Cited by 85 · see citing works
Self-citationGenotype-phenotype relationships in fragile X syndrome: a family study.
Loesch, D. Z., Huggins, R., Hay, D. A., Gedeon, Á. K., Mulley, J. C., & Sutherland, G. R. (1993) · Europe PMC (PubMed Central) · Cited by 84 · see citing works
Hansen, R. S., & Gartler, S. M. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.11.4174 · Cited by 78 · see citing works
Rousseau, F., Robb, L. J., Rouillard, P., & Kaloustian, V. M. D. (1994) · Human Molecular Genetics · doi:10.1093/hmg/3.6.927 · Cited by 74 · see citing works
FMR1 fully expanded mutation with minimal methylation in a high functioning fragile X male.
Wang, Z., Taylor, A. K., & Bridge, J. A. (1996) · Journal of Medical Genetics · doi:10.1136/jmg.33.5.376 · Cited by 55 · see citing works
de Graaff, E., Willemsen, R., Zhong, N. A., de Die-Smulders, C. E. M., Brown, W. T., Freling, G., & Oostra, B. A. (1995) · PubMed Central · Cited by 50 · see citing works
Self-citationIn Vitro DNA Methylation Inhibits FMR-1 Promoter
Hwu, W., Lee, Y. M., Lee, S.-C., & Wang, T. R. (1993) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.1993.1627 · Cited by 40 · see citing works
Oostra, B., & Willems, P. J. (1995) · Bioessays · doi:10.1002/bies.950171107 · Cited by 40 · see citing works
Self-citationEffect of in vitro promoter methylation and CGG repeat expansion on FMR- 1 expression
Sandberg, G. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.14.2883 · Cited by 38 · see citing works
Luo, S., Robinson, J. C., Reiss, A. L., & Migeon, B. R. (1993) · Somatic Cell and Molecular Genetics · doi:10.1007/bf01232750 · Cited by 37 · see citing works
Sasaki, T., Hansen, R. S., & Gartler, S. M. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.9.3819 · Cited by 36 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Molecular mechanisms underlying nucleotide repeat expansion disorders
Malik, I., Kelley, C. P., Wang, E. T., & Todd, P. K. (2021) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-021-00382-6 · Cited by 363 · see citing works
Epigenetic regulation of gene expression in physiological and pathological brain processes
Gräff, J., Kim, D., Dobbin, M. M., & Tsai, L.-H. (2011) · Physiological Reviews · doi:10.1152/physrev.00012.2010 · Cited by 373 · see citing works
Fragile X syndrome: causes, diagnosis, mechanisms, and therapeutics
Bagni, C., Tassone, F., Neri, G., & Hagerman, R. (2012) · Journal of Clinical Investigation · doi:10.1172/jci63141 · Cited by 321 · see citing works
Self-citationAcetylated histones are associated with FMR1 in normal but not fragile X-syndrome cells
Coffee, B., Zhang, F., Warren, S. T., & Reines, D. (1999) · Nature Genetics · doi:10.1038/8807 · Cited by 325 · see citing works
Chiurazzi, P., Grazia Pomponi, M., Pietrobono, R., Bakker, C. E., Neri, G., & Oostra, B. A. (1999) · Human Molecular Genetics · doi:10.1093/hmg/8.12.2317 · Cited by 217 · see citing works
Self-citationMolecular dissection of the events leading to inactivation of the FMR1 gene
Pietrobono, R., Tabolacci, E., Zalfa, F., Zito, I., Terracciano, A., Moscato, U., Bagni, C., Oostra, B., Chiurazzi, P., & Neri, G. (2005) · Human Molecular Genetics · doi:10.1093/hmg/ddi024 · Cited by 130 · see citing works
Self-citationTorrioli, M. G., Vernacotola, S., Peruzzi, L., Tabolacci, E., Mila, M., Militerni, R., Musumeci, S., Ramos, F. J., Frontera, M., Sorge, G., et al. (2008) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.32268 · Cited by 100 · see citing works
Self-citationInteraction of the Transcription Factors USF1, USF2, and α-Pal/Nrf-1 with the FMR1 Promoter
Kumari, D., & Usdin, K. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m009629200 · Cited by 92 · see citing works
Tabolacci, E., Pietrobono, R., Moscato, U., Oostra, B. A., Chiurazzi, P., & Neri, G. (2005) · European Journal of Human Genetics · doi:10.1038/sj.ejhg.5201393 · Cited by 92 · see citing works
Self-citationTreatment with valproic acid ameliorates ADHD symptoms in fragile X syndrome boys
Torrioli, M., Vernacotola, S., Setini, C., Bevilacqua, F., Martinelli, D., Snape, M., Hutchison, J. A., Di Raimo, F. R., Tabolacci, E., & Neri, G. (2010) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.33484 · Cited by 71 · see citing works
Self-citation
- Authors
- Chiurazzi, P., Pomponi, M. G., Willemsen, R., Oostra, B. A., & Neri, G.
- Affiliations
- Università Cattolica del Sacro Cuore (IT)
- Erasmus University Rotterdam (NL)
- Corresponding author
- Neri, G.
- Venue
- Human Molecular Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 1998-01-01
- Volume
- 7
- Issue
- 1
- Pages
- 109-113
- ISSN
- 0964-6906 (ISSN-L)
- 1460-2083
- OpenAlex
- W2119787118
- Cited by
- 198
- References
- 30
- Citations by year
- 2026: 2 · 2025: 6 · 2024: 6 · 2023: 5 · 2022: 2 · 2021: 8 · 2020: 5 · 2019: 6 · 2018: 6 · 2017: 4 · 2016: 12 · 2015: 6 · 2014: 12 · 2013: 13 · 2012: 6
- FWCI
- 6.11
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Human Molecular Genetics (publishedVersion)
- PubMed (publishedVersion)
- EUR Research Repository (Erasmus University Rotterdam) (submittedVersion)
- HighWire Press Open Archive (submittedVersion)
- Funders
- Erasmus Universiteit Rotterdam
- Erasmus+
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Keywords
- fragile X syndrome, FMR1 gene, CGG repeat expansion, promoter hypermethylation, DNA demethylation, azacitidine, gene reactivation, CpG islands, FMRP
- MeSH terms
- Cell Line, Female, Fragile X Syndrome, Gene Expression Regulation, Humans, Nerve Tissue Proteins, RNA-Binding Proteins, Gene Transfer Techniques, Fragile X Mental Retardation Protein, Fragile X Messenger Ribonucleoprotein 1
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review