Bi-allelic mutations of LONP1 encoding the mitochondrial LonP1 protease cause pyruvate dehydrogenase deficiency and profound neurodegeneration with progressive cerebellar atrophy
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LonP1 is crucial for maintaining mitochondrial proteostasis and mitigating cell stress. We identified a novel homozygous missense LONP1 variant, c.2282 C > T, (p.Pro761Leu), by whole-exome and Sanger sequencing in two siblings born to healthy consanguineous parents. Both siblings presented with stepwise regression during infancy, profound hypotonia and muscle weakness, severe intellectual disability and progressive cerebellar atrophy on brain imaging. Muscle biopsy revealed the absence of ragged-red fibers, however, scattered cytochrome c oxidase-negative staining and electron dense mitochondrial inclusions were observed. Primary cultured fibroblasts from the siblings showed normal levels of mtDNA and mitochondrial transcripts, and normal activities of oxidative phosphorylation complexes I through V. Interestingly, fibroblasts of both siblings showed glucose-repressed oxygen consumption compared to their mother, whereas galactose and palmitic acid utilization were similar. Notably, the siblings' fibroblasts had reduced pyruvate dehydrogenase (PDH) activity and elevated intracellular lactate:pyruvate ratios, whereas plasma ratios were normal. We demonstrated that in the siblings' fibroblasts, PDH dysfunction was caused by increased levels of the phosphorylated E1α subunit of PDH, which inhibits enzyme activity. Blocking E1α phosphorylation activated PDH and reduced intracellular lactate concentrations. In addition, overexpressing wild-type LonP1 in the siblings' fibroblasts down-regulated phosphoE1α. Furthermore, in vitro studies demonstrated that purified LonP1-P761L failed to degrade phosphorylated E1α, in contrast to wild-type LonP1. We propose a novel mechanism whereby homozygous expression of the LonP1-P761L variant leads to PDH deficiency and energy metabolism dysfunction, which promotes severe neurologic impairment and neurodegeneration.
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In human skeletal muscle, reduction of LonP1 activity results in electron-dense intra-mitochondrial accumulations, mitochondrial dysfunction, oxidative stress, and muscle weakness.
“In human skeletal muscle, the reduction of LonP1 activity results in electron-dense intra-mitochondrial accumulations, mitochondrial dysfunction, oxidative stress, and muscle weakness [162–164].”
From The connection between the dynamic remodeling of the mitochondrial network and the regulation of muscle mass (2021) · cites this paper as [164]
The matrix mitochondrial protease LonP1 is necessary for maintenance of mitochondrial matrix proteostasis.
“The matrix mitochondrial protease LonP1 is necessary for the maintenance of mitochondrial matrix proteostasis.”
From The connection between the dynamic remodeling of the mitochondrial network and the regulation of muscle mass (2021) · cites this paper as [164]
Cites
Assessing mitochondrial dysfunction in cells
Brand, M. D., & Nicholls, D. G. (2011) · Biochemical Journal · doi:10.1042/bj20110162 · Cited by 2,436 · see citing works
HIF-1 Regulates Cytochrome Oxidase Subunits to Optimize Efficiency of Respiration in Hypoxic Cells
Fukuda, R., Zhang, H., Kim, J.-W., Shimoda, L., Dang, C. V., & Semenza, G. L. (2007) · Cell · doi:10.1016/j.cell.2007.01.047 · Cited by 1,225 · see citing works
Evolutionary history and higher order classification of AAA+ ATPases
Iyer, L. M., Leipe, D. D., Koonin, E. V., & Aravind, L. (2003) · Journal of Structural Biology · doi:10.1016/j.jsb.2003.10.010 · Cited by 782 · see citing works
AAA+ Proteases: ATP-Fueled Machines of Protein Destruction
Sauer, R. T., & Baker, T. A. (2011) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060408-172623 · Cited by 763 · see citing works
Lon protease preferentially degrades oxidized mitochondrial aconitase by an ATP-stimulated mechanism
Bota, D. A., & Davies, K. J. A. (2002) · Nature Cell Biology · doi:10.1038/ncb836 · Cited by 557 · see citing works
Utter, M. F., & KEECH, D. B. (1963) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)67873-1 · Cited by 440 · see citing works
Jin, S. M., & Youle, R. J. (2013) · Autophagy · doi:10.4161/auto.26122 · Cited by 411 · see citing works
Lü, B., Lee, J., Nie, X., Li, M., Morozov, Y. I., Venkatesh, S., Bogenhagen, D. F., Temiakov, D., & Suzuki, C. K. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.10.023 · Cited by 320 · see citing works
Self-citationClinical manifestations in a cohort of 41 Rothmund-Thomson syndrome patients
Wang, L. L., Levy, M. L., Lewis, R. A., Chintagumpala, M., Lev, D., Rogers, M., & Plon, S. E. (2001) · American Journal of Medical Genetics · doi:10.1002/1096-8628(20010722)102:1 · Cited by 316 · see citing works
Patel, K. P., O'Brien, T. W., Subramony, S. H., Shuster, J., & Stacpoole, P. W. (2012) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2011.09.032 · Cited by 278 · see citing works
Requirement for the Yeast Gene LON in Intramitochondrial Proteolysis and Maintenance of Respiration
Suzuki, C. K., Suda, K., Wang, N., & Schatz, G. (1994) · Science · doi:10.1126/science.8146662 · Cited by 272 · see citing works
Self-citationRobinson, B. H., Petrova-Benedict, R., Buncic, J. R., & Wallace, D. C. (1992) · Biochemical Medicine and Metabolic Biology · doi:10.1016/0885-4505(92)90056-5 · Cited by 266 · see citing works
ATP-Dependent Lon Protease Controls Tumor Bioenergetics by Reprogramming Mitochondrial Activity
Quirós, P. M., Español, Y., Acín-Pérez, R., Rodríguez, F., Bárcena, C., Watanabe, K., Calvo, E., Loureiro, M., Fernández-García, M. S., Fueyo, A., et al. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.06.018 · Cited by 233 · see citing works
Transmission of cell stress from endoplasmic reticulum to mitochondria
Hori, O., Ichinoda, F., Tamatani, T., Yamaguchi, A., Sato, N., Ozawa, K., Kitao, Y., Miyazaki, M., Harding, H. P., Ron, D., et al. (2002) · The Journal of Cell Biology · doi:10.1083/jcb.200108103 · Cited by 219 · see citing works
Patel, K. P., O’Brien, T. W., Subramony, S. H., Shuster, J. J., & Stacpoole, P. W. (2012) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2012.03.017 · Cited by 193 · see citing works
Liu, T., Lü, B., Lee, I., Ondrovičová, G., Kutějová, E., & Suzuki, C. K. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m309642200 · Cited by 166 · see citing works
Self-citationCODAS Syndrome Is Associated with Mutations of LONP1, Encoding Mitochondrial AAA+ Lon Protease
Strauss, K. A., Jinks, R. N., Puffenberger, E. G., Venkatesh, S., Singh, K., Cheng, I., Mikita, N., Thilagavathi, J., Lee, J., Sarafianos, S. G., et al. (2015) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2014.12.003 · Cited by 163 · see citing works
Self-citationMultitasking in the mitochondrion by the ATP-dependent Lon protease
Venkatesh, S., Lee, J., Singh, K., Lee, I., & Suzuki, C. K. (2011) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2011.11.003 · Cited by 160 · see citing works
Self-citationPyruvate Dehydrogenase Complex Activity in Normal and Deficient Fibroblasts
Sheu, K. R., Hu, C.-W. C., & Utter, M. F. (1981) · Journal of Clinical Investigation · doi:10.1172/jci110176 · Cited by 155 · see citing works
Monitoring phosphorylation of the pyruvate dehydrogenase complex
Rardin, M. J., Wiley, S. E., Naviaux, R. K., Murphy, A. N., & Dixon, J. E. (2009) · Analytical Biochemistry · doi:10.1016/j.ab.2009.03.040 · Cited by 152 · see citing works
Granot, Z., Kobiler, O., Melamed‐Book, N., Eimerl, S., Bahat, A., Lü, B., Braun, S., Maurizi, M. R., Suzuki, C. K., Oppenheim, A. B., et al. (2007) · Molecular Endocrinology · doi:10.1210/me.2005-0458 · Cited by 139 · see citing works
Self-citationTian, Q., Li, T., Hou, W., Zheng, J., Schrum, L. W., & Bonkovsky, H. L. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.215772 · Cited by 134 · see citing works
Erratum: Livermore Faces Forces of Change
Anderson, C. (1994) · Science · doi:10.1126/science.8178144 · Cited by 125 · see citing works
Brown, G. K., Haan, E., Kirby, D. M., et al. (1988) · European Journal of Pediatrics · doi:10.1007/bf00442603 · Cited by 107 · see citing works
van Dyck, L., Neupert, W., & Langer, T. (1998) · Genes & Development · doi:10.1101/gad.12.10.1515 · Cited by 102 · see citing works
Mutations in LONP1, a mitochondrial matrix protease, cause CODAS syndrome
Dikoglu, E., Alfaiz, A. A., Górna, M. W., Bertola, D. R., Chae, J., Cho, T., Derbent, M., Alanay, Y., Güran, T., Kim, O.-H., et al. (2015) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.37029 · Cited by 85 · see citing works
Lü, B., Liu, T., Crosby, J. A., Thomas-Wohlever, J. A., Lee, I., & Suzuki, C. K. (2003) · Gene · doi:10.1016/s0378-1119(03)00403-7 · Cited by 80 · see citing works
Self-citationCrewe, C., Schafer, C. M., Lee, I., et al. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.754127 · Cited by 71 · see citing works
Defective mitochondrial protease LonP1 can cause classical mitochondrial disease
Peter, B., Waddington, C. L., Oláhová, M., Sommerville, E. W., Hopton, S., Pyle, A., Champion, M., Ohlson, M., Siibak, T., Chrzanowska-Lightowlers, Z. M. A., et al. (2018) · Human Molecular Genetics · doi:10.1093/hmg/ddy080 · Cited by 66 · see citing works
Maj, M. C., MacKay, N., Levandovskiy, V., et al. (2005) · The Journal of Clinical Endocrinology & Metabolism · doi:10.1210/jc.2005-0123 · Cited by 65 · see citing works
Ngo, J. K., Pomatto, L. C. D., Bota, D. A., Koop, A. L., & Davies, K. J. A. (2011) · The Journals of Gerontology Series A · doi:10.1093/gerona/glr145 · Cited by 56 · see citing works
Sepuri, N. B. V., Angireddy, R., Srinivasan, S., Guha, M., Spear, J. F., Lü, B., Anandatheerthavarada, H. K., Suzuki, C. K., & Avadhani, N. G. (2017) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2017.04.003 · Cited by 49 · see citing works
Self-citationShebib, S., Reed, M. H., Shuckett, E. P., et al. (1991) · American Journal of Medical Genetics · doi:10.1002/ajmg.1320400118 · Cited by 36 · see citing works
Pyruvate dehydrogenase phosphatase 1 (PDP1) null mutation produces a lethal infantile phenotype
Cameron, J. M., Maj, M. C., Levandovskiy, V., et al. (2009) · Human Genetics · doi:10.1007/s00439-009-0629-6 · Cited by 35 · see citing works
Self-citationA novel mutation in the proteolytic domain of LONP1 causes atypical CODAS syndrome
Inui, T., Anzai, M., Takezawa, Y., Endo, W., Kakisaka, Y., Kikuchi, A., Onuma, A., Kure, S., Nishino, I., Ohba, C., et al. (2017) · Journal of Human Genetics · doi:10.1038/jhg.2017.11 · Cited by 27 · see citing works
de Almeida, J. C. C., Vargas, F. R., Barbosa‐Neto, J. G., et al. (1995) · American Journal of Medical Genetics · doi:10.1002/ajmg.1320550107 · Cited by 16 · see citing works
Marlin, S., Pointe, H. D. L., Merrer, M. L., et al. (2010) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.33242 · Cited by 12 · see citing works
Clinical features of LONP1-related infantile cataract
Khan, A. O., & Albakri, A. S. (2018) · Journal of American Association for Pediatric Ophthalmology and Strabismus · doi:10.1016/j.jaapos.2017.10.012 · Cited by 10 · see citing works
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Hannah-Shmouni, F., MacNeil, L., Brady, L., Nilsson, M. I., & Tarnopolsky, M. (2019) · Frontiers in Neurology · doi:10.3389/fneur.2019.00981 · Cited by 19 · see citing works
Modulation of Lonp1 Activity by Small Compounds
Zanini, G., Micheloni, G., Sinigaglia, G., Selleri, V., Mattioli, A. V., Nasi, M., Pierri, C. L., & Pinti, M. (2025) · Biomolecules · doi:10.3390/biom15040553 · Cited by 7 · see citing works
- Authors
- Nimmo, G. A. M., Venkatesh, S., Pandey, A. K., Marshall, C. R., Hazrati, L.-N., Blaser, S., Ahmed, S., Cameron, J., Singh, K., Ray, P. N., Suzuki, C. K., & Yoon, G.
- Affiliations
- University of Toronto (CA)
- Rutgers, The State University of New Jersey (US)
- Division of Paediatric Neuroradiology, The Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada
- Karolinska Institutet (SE)
- Corresponding author
- Suzuki, Carolyn K
- Yoon, Grace
- ORCID
- Venue
- Human Molecular Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2018-10-09
- Volume
- 28
- Issue
- 2
- Pages
- 290-306
- ISSN
- 0964-6906 (ISSN-L)
- 1460-2083
- PMC
- PMC6322071
- OpenAlex
- W2897695914
- Cited by
- 40
- References
- 38
- Citations by year
- 2026: 6 · 2025: 4 · 2024: 5 · 2023: 5 · 2022: 7 · 2021: 4 · 2020: 6 · 2019: 3
- FWCI
- 1.16
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
- Locations
- Human Molecular Genetics (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- University of Toronto (MC-2012-13A)
- National Institutes of Health (1R21HD008391601)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Biochemical Acid Research Studies
- Keywords
- LONP1, pyruvate dehydrogenase deficiency, mitochondrial proteostasis, neurodegeneration, cerebellar atrophy, missense mutations, consanguinity, mitochondrial dysfunction, lactate/pyruvate ratio, energy metabolism, ragged-red fibers, cytochrome c oxidase
- MeSH terms
- Alleles, Cerebellar Diseases, DNA, Mitochondrial, Homozygote, Humans, Infant, Newborn, Lactates, Male, Mutation, Pedigree, Phosphorylation, Pyruvate Dehydrogenase Complex Deficiency Disease, Neurodegenerative Diseases, Protein Subunits, Mitochondrial Proteins, ATP-Dependent Proteases, Proteolysis
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