Reduced mitochondrial malate dehydrogenase activity has a strong effect on photorespiratory metabolism as revealed by13C labelling
Open accessAbstract
Mitochondrial malate dehydrogenase (mMDH) catalyses the interconversion of malate and oxaloacetate (OAA) in the tricarboxylic acid (TCA) cycle. Its activity is important for redox control of the mitochondrial matrix, through which it may participate in regulation of TCA cycle turnover. In Arabidopsis, there are two isoforms of mMDH. Here, we investigated to which extent the lack of the major isoform, mMDH1 accounting for about 60% of the activity, affected leaf metabolism. In air, rosettes of mmdh1 plants were only slightly smaller than wild type plants although the fresh weight was decreased by about 50%. In low CO2 the difference was much bigger, with mutant plants accumulating only 14% of fresh weight as compared to wild type. To investigate the metabolic background to the differences in growth, we developed a (13)CO2 labelling method, using a custom-built chamber that enabled simultaneous treatment of sets of plants under controlled conditions. The metabolic profiles were analysed by gas- and liquid- chromatography coupled to mass spectrometry to investigate the metabolic adjustments between wild type and mmdh1 The genotypes responded similarly to high CO2 treatment both with respect to metabolite pools and (13)C incorporation during a 2-h treatment. However, under low CO2 several metabolites differed between the two genotypes and, interestingly most of these were closely associated with photorespiration. We found that while the glycine/serine ratio increased, a concomitant altered glutamine/glutamate/α-ketoglutarate relation occurred. Taken together, our results indicate that adequate mMDH activity is essential to shuttle reductants out from the mitochondria to support the photorespiratory flux, and strengthen the idea that photorespiration is tightly intertwined with peripheral metabolic reactions.
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Arabidopsis knockout mutants of the mitochondrial isoforms of malate dehydrogenase have pronounced growth defects under low-CO2 conditions that promote photorespiration.
“studies of Arabidopsis (Arabidopsis thaliana) knockout mutants of the mitochondrial isoforms of malate dehydrogenase show that they have pronounced growth defects under low-CO2 conditions that promote photorespiration (Tomaz et al., 2010; Lindén et al., 2016).”
From Leaf Energy Balance Requires Mitochondrial Respiration and Export of Chloroplast NADPH in the Light (2019) · cites this paper as Lindén et al., 2016
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Tomaz, T., Bagard, M., Pracharoenwattana, I., Lindén, P., Lee, C. P., Carroll, A. J., Ströher, E., Smith, S. M., Gardeström, P., & Millar, A. H. (2010) · Plant Physiology · doi:10.1104/pp.110.161612 · Cited by 264 · see citing works
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Research works printed but not linked: 38
- Allen J Davey HM Broadhurst D Heald JK Rowland JJ Oliver SG Kell DB 2003 High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. Nature Biotechnology 21, 692– 696. 12740584
- Arrivault S Guenther M Ivakov A Feil R Vosloh D Van Dongen JT Sulpice R Stitt M 2009 Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. The Plant Journal 59, 826– 839. 19453453
- Bauwe H Hagemann M Fernie AR 2010 Photorespiration: players, partners and origin. Trends in Plant Science 15, 330– 336. 20403720
- Bykova NV Keerberg O Pärnik T Bauwe H Gardeström P 2005 Interaction between photorespiration and respiration in transgenic potato plants with antisense reduction in glycine decarboxylase. Planta 222, 130– 140. 15809865
- Bykova NV Møller IM Gardeström P Igamberdiev AU 2014 The function of glycine decarboxylase complex is optimized to maintain high photorespiratory flux via buffering of its reaction products. Mitochondrion 19, Part B, 357– 364. 24444663
- Bylesjö M Rantalainen M Cloarec O Nicholson JK Holmes E Trygg J 2006 OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification. Journal of Chemometrics 20, 341– 351.
- Fernie AR Geigenberger P Stitt M 2005 Flux an important, but neglected, component of functional glenomics. Current Opinion in Plant Biology 8, 174– 182. 15752998
- Fiehn O 2002 Metabolomics – the link between genotypes and phenotypes. Plant Molecular Biology 48, 155– 171. 11860207
- Gauthier PP Bligny R Gout E Mahe A Nogues S Hodges M Tcherkez GG 2010 In folio isotopic tracing demonstrates that nitrogen assimilation into glutamate is mostly independent from current CO2 assimilation in illuminated leaves of Brassica napus. New Phytology 185, 988– 999. 20070539
- Gullberg J Jonsson P Nordstrom A Sjostrom M Moritz T 2004 Design of experiments: an efficient strategy to identify factors influencing extraction and derivatization of Arabidopsis thaliana samples in metabolomic studies with gas chromatography/mass spectrometry. Analytical Biochemistry 331, 283– 295. 15265734
- Hebbelmann I Selinski J Wehmeyer C Goss T Voss I Mulo P Kangasjärvi S Aro E-M Oelze M-L Dietz K-J 2012 Multiple strategies to prevent oxidative stress in Arabidopsis plants lacking the malate valve enzyme NADP-malate dehydrogenase. Journal of Experimental Botany 63, 1445– 1459. 22140244 PMC3276105
- Heise R Arrivault S Szecowka M Tohge T Nunes-Nesi A Stitt M Nikoloski Z Fernie AR 2014 Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9, doi: 10.1038/nprot.2014.115 24992096 · DOI
- Hiller K Metallo C Stephanopoulos G 2011 Elucidation of cellular metabolism via metabolomics and stable-isotope assisted metabolomics. Current Pharmaceutical Biotechnology 12, 1075– 1086. 21466455
- Huege J Sulpice R Gibon Y Lisec J Koehl K Kopka J 2007 GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling. Phytochemistry 68, 2258– 2272. 17475294
- Igamberdiev AU Bykova NV Lea PJ Gardeström P 2001 The role of photorespiration in redox and energy balance of photosynthetic plant cells: a study with a barley mutant deficient in glycine decarboxylase. Physiologia Plantarum 111, 427– 438. 11299007
- Keerberg O Ivanova H Keerberg H Paernik T Talts P Gardestrom P 2011 Quantitative analysis of photosynthetic carbon metabolism in protoplasts and intact leaves of barley. Determination of carbon fluxes and pool sizes of metabolites in different cellular compartments. Biosystems 103, 291– 301. 21055441
- Kueger S Steinhauser D Willmitzer L Giavalisco P 2012 High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions. The Plant Journal 70, 39– 50. 22449042
- Ma F Jazmin LJ Young JD Allen DK 2014 Isotopically nonstationary (13)C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation. Proceedings of the National Academy of Sciences, USA 111, 16967– 16972. PMC4250135 25368168
- Matsuda F Wakasa K Miyagawa H 2007 Metabolic flux analysis in plants using dynamic labeling technique: Application to tryptophan biosynthesis in cultured rice cells. Phytochemistry 68, 2290– 2301. 17512026
- Nunes-Nesi A Carrari F Lytovchenko A Smith AMO Loureiro ME Ratcliffe RG Sweetlove LJ Fernie AR 2005 Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants. Plant Physiology 137, 611– 622. 15665243 PMC1065362
- Pracharoenwattana I Zhou WX Keech O Francisco PB Udomchalothorn T Tschoep H Stitt M Gibon Y Smith SM 2010 Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen. Plant Journal 62, 785– 795. 20202172
- Redestig H Fukushima A Stenlund H Moritz T Arita M Saito K Kusano M 2009 Compensation for systematic cross-contribution improves normalization of mass spectrometry based metabolomics data. Analytical Chemistry 81, 7974– 7980. 19743813
- Saito K Matsuda F 2010 Metabolomics for functional genomics, systems biology, and biotechnology. Annual Review of Plant Biology 61, 463– 489. 19152489
- Sauer U Canonaco F Heri S Perrenoud A Fischer E 2004 The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. Journal of Biological Chemistry 279, 6613– 6619. 14660605
- Schauer N Steinhauser D Strelkov S 2005 GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579, 1332– 1337. 15733837
- Scheibe R 2004 Malate valves to balance cellular energy supply. Physiologia Plantarum 120, 21– 26. 15032873
- Sweetlove LJ Beard KFM Nunes-Nesi A Fernie AR Ratcliffe RG 2010 Not just a circle: flux modes in the plant TCA cycle. Trends in Plant Science 15, 462– 470. 20554469
- Sweetlove LJ Obata T Fernie AR 2014 Systems analysis of metabolic phenotypes: what have we learnt? Trends in Plant Science 19, 222– 230. 24139444
- Szecowka M Heise R Tohge T Nunes-Nesi A Vosloh D Huege J Feil R Lunn J Nikoloski Z Stitt M Fernie A Arrivault S 2013 Metabolic fluxes in an illuminated Arabidopsis rosette. The Plant Cell 25, 694– 714. 23444331 PMC3608787
- t’Kindt R Morreel K Deforce D Boerjan W Van Bocxlaer J 2009 Joint GC-MS and LC-MS platforms for comprehensive plant metabolomics: repeatability and sample pre-treatment. Journal of Chromatography B 877, 3572– 3580. 19762291
- Tcherkez G Mahe A Gauthier P Mauve C Gout E Bligny R Cornic G Hodges M 2009 In folio respiratory fluxomics revealed by 13C isotopic labeling and H/D isotope effects highlight the noncyclic nature of the tricarboxylic acid ‘cycle’ in illuminated leaves. Plant Physiology 151, 620– 630. 19675152 PMC2754646
- Trygg J Holmes E Lundstedt T 2006 Chemometrics in metabonomics. Journal of Proteome Research 6, 469– 479. 17269704
- Trygg J Wold S 2002 Orthogonal projections to latent structures (O-PLS). Journal of Chemometrics 16, 119– 128.
- Weckwerth W 2011 Green systems biology – from single genomes, proteomes and metabolomes to ecosystems research and biotechnology. Journal of Proteomics 75, 284– 305. 21802534
- Wiechert W 2001 13C metabolic flux analysis. Metabolic Engineering 3, 195– 206. 11461141
- Wiechert W Schweissgut O Takanaga H Frommer WB 2007 Fluxomics: mass spectrometry versus quantitative imaging. Current Opinion in Plant Biology 10, 323– 330. 17481942 PMC2992557
- Williams TCR Miguet L Masakapalli SK Kruger NJ Sweetlove LJ Ratcliffe RG 2008 Metabolic network fluxes in heterotrophic Arabidopsis cells: stability of the flux distribution under different oxygenation conditions. Plant Physiology 148, 704– 718. 18667721 PMC2556809
- Wittmann C Heinzle E 2002 Genealogy profiling through strain improvement by using metabolic network analysis: metabolic flux genealogy of several generations of lysine-producing corynebacteria. Applied and Environmental Microbiology 68, 5843– 5859. 12450803 PMC134428
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Self-citation
- Authors
- Lindén, P., Keech, O., Stenlund, H., Gardeström, P., & Moritz, T.
- Affiliations
- Swedish University of Agricultural Sciences (SE)
- Umeå Plant Science Centre (SE)
- Umeå University (SE)
- Corresponding author
- Gardeström, Per
- Venue
- Journal of Experimental Botany
- Publisher
- Oxford University Press (OUP)
- Published
- 2016-02-17
- Volume
- 67
- Issue
- 10
- Pages
- 3123-3135
- ISSN
- 0022-0957 (ISSN-L)
- 1460-2431
- PMC
- PMC4867893
- OpenAlex
- W2334504062
- Cited by
- 57
- References
- 1
- Citations by year
- 2026: 4 · 2024: 6 · 2023: 5 · 2022: 7 · 2021: 9 · 2020: 9 · 2019: 3 · 2018: 7 · 2016: 7
- FWCI
- 2.95
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- cc-by
- Locations
- Journal of Experimental Botany (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- KTH Publication Database DiVA (KTH Royal Institute of Technology) (submittedVersion, other-oa)
- HighWire Press Open Archive (submittedVersion)
- Funders
- Department of Biotechnology, Ministry of Science and Technology, India
- Svenska Forskningsrådet Formas
- Vetenskapsrådet (621-2014-4688)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant responses to elevated CO2
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant nutrient uptake and metabolism
- Keywords
- mitochondrial malate dehydrogenase, photorespiration, TCA cycle, oxaloacetate, 13CO2 labeling, Arabidopsis thaliana, low CO2, elevated CO2, leaf metabolism, plant growth
- MeSH terms
- Carbon Isotopes, Malate Dehydrogenase, Gas Chromatography-Mass Spectrometry, Mitochondria, Oxidation-Reduction, Photosynthesis, Arabidopsis
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