The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
Open accessAbstract
PartitionFinder 2 is a program for automatically selecting best-fit partitioning schemes and models of evolution for phylogenetic analyses. PartitionFinder 2 is substantially faster and more efficient than version 1, and incorporates many new methods and features. These include the ability to analyze morphological datasets, new methods to analyze genome-scale datasets, new output formats to facilitate interoperability with downstream software, and many new models of molecular evolution. PartitionFinder 2 is freely available under an open source license and works on Windows, OSX, and Linux operating systems. It can be downloaded from www.robertlanfear.com/partitionfinder. The source code is available at https://github.com/brettc/partitionfinder.
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Citations
Cites
Phylogenomics resolves the timing and pattern of insect evolution
Misof, B., Liu, S., Meusemann, K., Peters, R. S., Donath, A., Mayer, C., Frandsen, P. B., Ware, J., Flouri, T., Beutel, R. G., et al. (2014) · Science · doi:10.1126/science.1257570 · Cited by 2,694
Self-citationSelecting optimal partitioning schemes for phylogenomic datasets
Lanfear, R., Calcott, B., Kainer, D., Mayer, C., & Stamatakis, A. (2014) · BMC Evolutionary Biology · doi:10.1186/1471-2148-14-82 · Cited by 762
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Research works printed but not linked: 7
- 10.1186/s12862-015-0283-7 · DOI
- 10.1371/journal.pone.0048990 · DOI
- 10.1126/science.1253451 · DOI · Paper page
- 10.1093/molbev/msr202 · DOI · Paper page
- 10.1093/molbev/mss020 · DOI · Paper page
- 10.1093/molbev/mss112 · DOI · Paper page
- 10.1016/0169-5347(96)10041-0 · DOI · Paper page
Cited by
Ctenophore relationships and their placement as the sister group to all other animals
Whelan, N. V., Kocot, K. M., Moroz, T. P., Mukherjee, K., Williams, P., Paulay, G., Moroz, L. L., & Halanych, K. M. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0331-3 · Cited by 263
Kayal, E., Bentlage, B., Sabrina Pankey, M., Ohdera, A. H., Medina, M., Plachetzki, D. C., Collins, A. G., & Ryan, J. F. (2018) · BMC Evolutionary Biology · doi:10.1186/s12862-018-1142-0 · Cited by 255
“For all ML analyses, we first performed 20 independent runs using random starting trees under the best-fit model (preliminary analyses) or the modeling scheme predicted by PartitionFinder2 and from these, chose the best scoring tree.”
InfluentialThe origin of squamates revealed by a Middle Triassic lizard from the Italian Alps
Simões, T. R., Caldwell, M. W., Tałanda, M., Bernardi, M., Palci, A., Vernygora, O., Bernardini, F., Mancini, L., & Nydam, R. L. (2018) · Nature · doi:10.1038/s41586-018-0093-3 · Cited by 253
Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary
Alfaro, M. E., Faircloth, B. C., Harrington, R. C., Sorenson, L., Friedman, M., Thacker, C. E., Oliveros, C. H., Černý, D., & Near, T. J. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0494-6 · Cited by 206
The evolutionary history of dogs in the Americas
Ní Leathlobhair, M., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., et al. (2018) · Science · doi:10.1126/science.aao4776 · Cited by 184
Metadata
- Authors
- Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., & Calcott, B.
- Venue
- Molecular Biology and Evolution
- Publisher
- Oxford University Press (OUP)
- Published
- 2016-12-23
- Volume
- 34
- Issue
- 3
- Pages
- msw260
- ISSN
- 0737-4038 (ISSN-L)
- 1537-1719
- OpenAlex
- W2563535234
- Cited by
- 5,261
- References
- 2
- FWCI
- 143.40
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., & Calcott, B. (2016). PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msw260
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