The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Improved Thermodynamic Parameters and Helix Initiation Factor to Predict Stability of DNA Duplexes
Open accessAbstract
To improve the previous DNA/DNA nearest-neighbor parameters, thermodynamic parameters (Δ H °, Δ S ° and Δ G °) of 50 DNA/DNA duplexes were measured. Enthalpy change of a helix initiation factor is also considered though the parameters reported recently did not contain the factor. A helix initiation factor for DNA/DNA duplex determined here was the same as that of RNA/RNA duplex (ΔG° 37 = 3.4 kcal/mol). The improved nearest-neighbor parameters reproduced not only these 50 experimental values used here but also 15 other experimental values obtained in different studies. Comparing Δ G ° 37 values of DNA/DNA nearest-neighbor parameters obtained here with those of RNA/RNA and RNA/DNA, RNA/RNA duplex was generally the most stable of the three kinds of duplexes with the same nearest-neighbor sequences. Which is more stable between DNA/DNA and RNA/DNA duplexes is sequence dependent.
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Cites
Improved free-energy parameters for predictions of RNA duplex stability.
Freier, S. M., Kierzek, R., Jaeger, J. A., Sugimoto, N., Caruthers, M. H., Neilson, T., & Turner, D. H. (1986) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.83.24.9373 · Cited by 1,470
Self-citationThermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
Sugimoto, N., Nakano, S.-I., Katoh, M., Matsumura, A., Nakamuta, H., Ohmichi, T., Yoneyama, M., & Sasaki, M. (1995) · Biochemistry · doi:10.1021/bi00035a029 · Cited by 697
Self-citationHall, K. B., & McLaughlin, L. W. (1991) · Biochemistry · doi:10.1021/bi00108a002 · Cited by 112
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Metadata
- Authors
- Sugimoto, N., Nakano, S.-I., Yoneyama, M., & Honda, K.-I.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 1996-11-01
- Volume
- 24
- Issue
- 22
- Pages
- 4501-4505
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2164604555
- Cited by
- 467
- References
- 3
- FWCI
- 2.47
- Type
- journal article
- Language
- en
- Open access
- green
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- Sugimoto, N., Nakano, S.-I., Yoneyama, M., & Honda, K.-I. (1996). Improved Thermodynamic Parameters and Helix Initiation Factor to Predict Stability of DNA Duplexes. Nucleic Acids Research. https://doi.org/10.1093/nar/24.22.4501
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