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Antisense Properties of Duplex- and Triplex-Forming PNAs

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Knudsen, H., Nielsen, P. E.·1996·Nucleic Acids Research

Abstract

The potential of peptide nucleic acids (PNAs) as specific inhibitors of translation has been studied. PNAs with a mixed purine/pyrimidine sequence form duplexes, while homopyrimidine PNAs form (PNA)2/RNA triplexes with complementary sequences on RNA. We show here that neither of these PNA/RNA structures are substrates for RNase H. Translation experiments in cell-free extracts showed that a 15mer duplex-forming PNA blocked translation in a dose-dependent manner when the target was 5'-proximal to the AUG start codon on the RNA, whereas similar 10-, 15- or 20mer PNAs had no effect when targeted towards sequences in the coding region. Triplex-forming 10mer PNAs were efficient and specific antisense agents with a target overlapping the AUG start codon and caused arrest of ribosome elongation with a target positioned in the coding region of the mRNA. Furthermore, translation could be blocked with a 6mer bisPNA or with a clamp PNA, forming partly a triplex, partly a duplex, with its target sequence in the coding region of the mRNA.

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Metadata

Authors
Knudsen, H., & Nielsen, P. E.
Venue
Nucleic Acids Research
Published
1996-02-01
Volume
24
Issue
3
Pages
494-500
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2010476099
Cited by
256
References
2
FWCI
7.67
Type
journal article
Language
en
Open access
green

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CoChat. (2026). Citation check: Antisense Properties of Duplex- and Triplex-Forming PNAs. https://app.cochat.ai/papers/10.1093/nar/24.3.494
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Knudsen, H., & Nielsen, P. E. (1996). Antisense Properties of Duplex- and Triplex-Forming PNAs. Nucleic Acids Research. https://doi.org/10.1093/nar/24.3.494

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