The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis
Open accessAbstract
The 4 202 353 bp genome of the alkaliphilic bacterium Bacillus halodurans C-125 contains 4066 predicted protein coding sequences (CDSs), 2141 (52.7%) of which have functional assignments, 1182 (29%) of which are conserved CDSs with unknown function and 743 (18. 3%) of which have no match to any protein database. Among the total CDSs, 8.8% match sequences of proteins found only in Bacillus subtilis and 66.7% are widely conserved in comparison with the proteins of various organisms, including B.subtilis. The B. halodurans genome contains 112 transposase genes, indicating that transposases have played an important evolutionary role in horizontal gene transfer and also in internal genetic rearrangement in the genome. Strain C-125 lacks some of the necessary genes for competence, such as comS, srfA and rapC, supporting the fact that competence has not been demonstrated experimentally in C-125. There is no paralog of tupA, encoding teichuronopeptide, which contributes to alkaliphily, in the C-125 genome and an ortholog of tupA cannot be found in the B.subtilis genome. Out of 11 sigma factors which belong to the extracytoplasmic function family, 10 are unique to B. halodurans, suggesting that they may have a role in the special mechanism of adaptation to an alkaline environment.
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Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
Cole, S. T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S. V., Eiglmeier, K., Gas, S., Barry, C. E., et al. (1998) · Nature · doi:10.1038/31159 · Cited by 7,847
The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessières, P., Bolotin, A., Borchert, S., et al. (1997) · Nature · doi:10.1038/36786 · Cited by 3,679
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Complete genome sequence of Lactobacillus plantarum WCFS1
Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O. P., Leer, R., Tarchini, R., Peters, S. A., Sandbrink, H. M., Fiers, M. W. E. J., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0337704100 · Cited by 1,472
Makarova, K. S. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.2.482 · Cited by 353
A Comparative Genome Analysis Identifies Distinct Sorting Pathways in Gram-Positive Bacteria
Comfort, D., & Clubb, R. T. (2004) · Infection and Immunity · doi:10.1128/iai.72.5.2710-2722.2004 · Cited by 203
Adak, S., Aulak, K. S., & Stuehr, D. J. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m201136200 · Cited by 195
Wood, A. P., Aurikko, J. P., & Kelly, D. P. (2004) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2003.12.001 · Cited by 177
Andrade, M. A., Ciccarelli, F. D., Perez-Iratxeta, C., & Bork, P. (2002) · Genome Biology · doi:10.1186/gb-2002-3-9-research0047 · Cited by 135
Suzuki, S., Ishii, S., Hoshino, T., Rietze, A., Tenney, A., Morrill, P. L., Inagaki, F., Kuenen, J. G., & Nealson, K. H. (2017) · The ISME Journal · doi:10.1038/ismej.2017.111 · Cited by 78
Scotcher, M. C., Rudolph, F. B., & Bennett, G. N. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.4.1987-1995.2005 · Cited by 46
Metadata
- Authors
- Takami, H.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2000-11-01
- Volume
- 28
- Issue
- 21
- Pages
- 4317-4331
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2158355883
- Cited by
- 533
- References
- 3
- FWCI
- 27.46
- Type
- journal article
- Language
- en
- Open access
- green
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