The DOI matches its Crossref record; 13 of the 13 references it cites were found in a registry or an index.
PlantProm: a database of plant promoter sequences
Open accessAbstract
PlantProm DB, a plant promoter database, is an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site(s), TSS, from various plant species. The first release (2002.01) of PlantProm DB contains 305 entries including 71, 220 and 14 promoters from monocot, dicot and other plants, respectively. It provides DNA sequence of the promoter regions (-200 : +51) with TSS on the fixed position +201, taxonomic/promoter type classification of promoters and Nucleotide Frequency Matrices (NFM) for promoter elements: TATA-box, CCAAT-box and TSS-motif (Inr). Analysis of TSS-motifs revealed that their composition is different in dicots and monocots, as well as for TATA and TATA-less promoters. The database serves as learning set in developing plant promoter prediction programs. One such program (TSSP) based on discriminant analysis has been created by Softberry Inc. and the application of a support ftp: vector machine approach for promoter identification is under development. PlantProm DB is available at http://mendel.cs.rhul.ac.uk/ and http://www.softberry.com/.
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Expression of Arabidopsis MIRNA Genes
Xie, Z., Allen, E., Fahlgren, N., Calamar, A., Givan, S. A., & Carrington, J. C. (2005) · Plant Physiology · doi:10.1104/pp.105.062943 · Cited by 707
Hasan, N., Choudhary, S., Naaz, N., Sharma, N., & Laskar, R. A. (2021) · Journal of Genetic Engineering and Biotechnology · doi:10.1186/s43141-021-00231-1 · Cited by 513
Arabidopsis mutant sk156 reveals complex regulation of SPL15 in a miR156-controlled gene network
Wei, S., Gruber, M. Y., Yu, B., Gao, M.-J., Khachatourians, G. G., Hegedus, D. D., Parkin, I. A., & Hannoufa, A. (2012) · BMC Plant Biology · doi:10.1186/1471-2229-12-169 · Cited by 73
Metadata
- Authors
- Shahmuradov, I. A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-01-01
- Volume
- 31
- Issue
- 1
- Pages
- 114-117
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2101163218
- Cited by
- 286
- References
- 13
- FWCI
- 4.40
- Type
- journal article
- Language
- en
- Open access
- bronze
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