A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes

Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae Rd

Fleischmann, R. D., Adams, M. D., White, O. R., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J.-F., Dougherty, B. A., Merrick, J. M., et al. (1995) · Science · doi:10.1126/science.7542800 · Cited by 5,641 · see citing works

Purification and properties

Cox, B. M., Opheim, K. E., Teschemacher, H., & D, A. G. M. (1975) · Life Sciences · doi:10.1016/0024-3205(75)90272-6 · Cited by 1,708 · see citing works

Mobile DNA II

(2007) · Wiley eBooks · doi:10.1128/9781555817954 · Cited by 1,296 · see citing works

A Restriction enzyme from Hemophilus influenzae

Smith, H. O., & Welcox, K. W. (1970) · Journal of Molecular Biology · doi:10.1016/0022-2836(70)90149-x · Cited by 892 · see citing works

A restriction enzyme from Hemophilus influenzae

Kelly, T. J., & Smith, H. O. (1970) · Journal of Molecular Biology · doi:10.1016/0022-2836(70)90150-6 · Cited by 596 · see citing works

Homing endonucleases: keeping the house in order

Belfort, M. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3379 · Cited by 481 · see citing works

A Suggested nomenclature for bacterial host modification and restriction systems and their enzymes

Smith, H. O., & Nathans, D. (1973) · Journal of Molecular Biology · doi:10.1016/0022-2836(73)90152-6 · Cited by 457 · see citing works

A Restriction Enzyme from Hemophilus influenzae II. Base Sequence of the Recognition Site

Kelly, T. J., & Smith, H. O. (1989) · Elsevier eBooks · doi:10.1016/b978-0-12-131200-8.50032-0 · Cited by 452 · see citing works

Type I Restriction Systems: Sophisticated Molecular Machines (a Legacy of Bertani and Weigle)

Murray, N. E. (2000) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.64.2.412-434.2000 · Cited by 447 · see citing works

REBASE--restriction enzymes and methylases

Roberts, R. J., & Macelis, D. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.312 · Cited by 360 · see citing works

DNA Restriction and Modification Mechanisms in Bacteria

Boyer, H. W. (1971) · Annual Review of Microbiology · doi:10.1146/annurev.mi.25.100171.001101 · Cited by 330 · see citing works

Escherichia coli K-12 restricts DNA containing 5-methylcytosine.

Raleigh, E. A., & Wilson, G. G. (1986) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.83.23.9070 · Cited by 318 · see citing works

REBASE: restriction enzymes and methyltransferases

Roberts, R. J. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg069 · Cited by 307 · see citing works

Class-IIS restriction enzymes — a review

Szybalski, W., Kim, S. C., Hasan, N. M., & Podhajska, A. J. (1991) · Gene · doi:10.1016/0378-1119(91)90345-c · Cited by 249 · see citing works

Mobile Introns: Pathways and Proteins

Belfort, M., Derbyshire, V., Parker, M. M., Cousineau, B., & Lambowitz, A. M. (2007) · doi:10.1128/9781555817954.ch31 · Cited by 201 · see citing works

Structure and Mechanism of Multifunctional Restriction Endonucleases

Yuan, R. (1981) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.50.070181.001441 · Cited by 199 · see citing works

Nucleoside triphosphate-dependent restriction enzymes

Dryden, D. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.18.3728 · Cited by 163 · see citing works

The vsr gene product of E. coli K-12 is a strand- and sequence-specific DNA mismatch endonuclease

Hennecke, F., Kolmar, H., Bründl, K., et al. (1991) · Nature · doi:10.1038/353776a0 · Cited by 155 · see citing works

A family of regulatory genes associated with type II restriction-modification systems

Tao, T., Bourne, J. C., & Blumenthal, R. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.4.1367-1375.1991 · Cited by 151 · see citing works

REBASE--restriction enzymes and methylases

Roberts, R. J. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.268 · Cited by 120 · see citing works

Natrialba magadii virus φCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon

Klein, R., Baranyi, U., Rössler, N., et al. (2002) · Molecular Microbiology · doi:10.1046/j.1365-2958.2002.03064.x · Cited by 98 · see citing works

Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I11Edited by J. Karn

Janščák, P., Sandmeier, U., Szczelkun, M. D., et al. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4411 · Cited by 89 · see citing works

DNA methylases of Hemophilus influenzae Rd

Roy, P. H., & Smith, H. O. (1973) · Journal of Molecular Biology · doi:10.1016/0022-2836(73)90515-9 · Cited by 84 · see citing works

Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase

Looney, M. C., Moran, L. S., Jack, W. E., et al. (1989) · Gene · doi:10.1016/0378-1119(89)90284-9 · Cited by 83 · see citing works

Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction‐modification enzymes.

Gubler, M., Braguglia, D., Meyer, J., et al. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05046.x · Cited by 79 · see citing works

DNA methylases of Hemophilus influenzae Rd

Roy, P. H., & Smith, H. O. (1973) · Journal of Molecular Biology · doi:10.1016/0022-2836(73)90516-0 · Cited by 76 · see citing works

Engineering a nicking endonuclease N. Alw I by domain swapping

Xu, Y., Lunnen, K. D., & Kong, H. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.241215698 · Cited by 76 · see citing works

Methyl-specific DNA binding by McrBC, a modification-dependent restriction enzyme

Stewart, F. J., Panne, D., Bickle, T. A., et al. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3697 · Cited by 75 · see citing works

Cooperative Binding Properties of Restriction Endonuclease EcoRII with DNA Recognition Sites

Reuter, M., Kupper, D., Meisel, A., et al. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.14.8294 · Cited by 65 · see citing works

Restriction and modification in Bacillus subtilis: DNA methylation potential of the related bacteriophages Z, SPR, SP beta, phi 3T, and rho 11

Noyer-Weidner, M., Jentsch, S., Pawlek, B., et al. (1983) · Journal of Virology · doi:10.1128/jvi.46.2.446-453.1983 · Cited by 56 · see citing works

Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement.

Huai, Q., Colandene, J. D., Topal, M. D., et al. (2001) · Nature Structural Biology · doi:10.1038/90366 · Cited by 56 · see citing works

Agmenellum quadruplicatum M.AquI, a novel modification methylase

Karreman, C., & de Waard, A. (1990) · Journal of Bacteriology · doi:10.1128/jb.172.1.266-272.1990 · Cited by 49 · see citing works

DNA cleavage by type III restriction-modification enzyme Eco P15I is independent of spacer distance between two head to head oriented recognition sites †,1 †In memory of Dieter Cech (1944–1996), Professor of bioorganic chemistry at the Humboldt University, Berlin. 1Edited by J. Karn

Mücke, M., Reich, S., Möncke‐Buchner, E., et al. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.4998 · Cited by 45 · see citing works

Families of restriction enzymes: an analysis prompted by molecular and genetic data for type ID restriction and modification systems

Titheradge, A. J. B. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.20.4195 · Cited by 43 · see citing works

Nomenclature for bacterial genes coding for class-II restriction endonucleases and modification methyltransferases

Szybalski, W., Blumenthal, R., Brooks, J. E., et al. (1988) · Gene · doi:10.1016/0378-1119(88)90303-4 · Cited by 39 · see citing works

Cloning and analysis of the four genes coding for Bpu10I restriction- modification enzymes

Stankevicius, K. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.4.1084 · Cited by 33 · see citing works

Restriction and Modification of Bacteriophage S2 in Haemophilus influenzae

Gromkova, R. C., Bendler, J. W., & Goodgal, S. H. (1973) · Journal of Bacteriology · doi:10.1128/jb.114.3.1151-1157.1973 · Cited by 26 · see citing works

Stepwise cloning and molecular characterization of theHgiDI restriction-modification system fromHerpetosiphon giganteus Hpa2

Düsterhäft, A., Erdmann, D., & Kröger, M. (1991) · Nucleic Acids Research · doi:10.1093/nar/19.5.1049 · Cited by 20 · see citing works

Converting MlyI endonuclease into a nicking enzyme by changing its oligomerization state

Besnier, C., & Kong, H. (2001) · EMBO Reports · doi:10.1093/embo-reports/kve175 · Cited by 18 · see citing works

Purification and characterization of C·BamHI, a regulator of the BamHI restriction-modification system

Sohail, A., Ives, C. L., & Brooks, J. E. (1995) · Gene · doi:10.1016/0378-1119(94)00698-r · Cited by 16 · see citing works

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes.

Roberts, R. J., Vincze, T., Posfai, J., & Macelis, D. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1046 · Cited by 728 · see citing works

The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

Oliveira, P. H., Touchon, M., & Rocha, E. P. C. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku734 · Cited by 354 · see citing works

Engineering Clostridium strain to accept unmethylated DNA

Dong, H., Zhang, Y., Dai, Z., & Li, Y. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009038 · Cited by 91 · see citing works

High-resolution crystal structure of the restriction-modification controller protein C.AhdI from Aeromonas hydrophila

McGeehan, J. E., Streeter, S. D., Papapanagiotou, I., Fox, G. C., & Kneale, G. G. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.12.025 · Cited by 51 · see citing works

Next-generation sequencing as an approach to dairy starter selection

Kelleher, P., Murphy, J., Mahony, J., & van Sinderen, D. (2015) · Dairy Science & Technology · doi:10.1007/s13594-015-0227-4 · Cited by 51 · see citing works

Genome-wide analysis of restriction-modification system in unicellular and filamentous cyanobacteria

Zhao, F., Zhang, X., Liang, C., Wu, J., Bao, Q., & Qin, S. (2006) · Physiological Genomics · doi:10.1152/physiolgenomics.00255.2005 · Cited by 47 · see citing works

Comparative genomics reveals diversified CRISPR-Cas systems of globally distributed Microcystis aeruginosa, a freshwater bloom-forming cyanobacterium

Yang, C., Lin, F., Li, Q., Li, T., & Zhao, J. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00394 · Cited by 44 · see citing works

Whole genomic DNA sequencing and comparative genomic analysis of<i>Arthrospira platensis</i>: high genome plasticity and genetic diversity

Xu, T., Qin, S., Hu, Y., Song, Z., Ying, J., Li, P., Dong, W., Zhao, F., Yang, H., & Bao, Q. (2016) · DNA Research · doi:10.1093/dnares/dsw023 · Cited by 37 · see citing works

Characterization of Limnospira platensis PCC 9108 R-M and CRISPR-Cas systems

Castillo, M., Guevara, G., Baldanta, S., Rodríguez, P. S., Agudo, L., Nogales, J., Carrasco, A. D., Arribas-Aguilar, F., Pérez-Pérez, J., García, J. L., et al. (2024) · Microbiological Research · doi:10.1016/j.micres.2023.127572 · Cited by 7 · see citing works

Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family

Dassa, B., London, N., Stoddard, B. L., Schueler‐Furman, O., & Pietrokovski, S. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp095 · Cited by 96 · see citing works

Creation of a type IIS restriction endonuclease with a long recognition sequence

Lippow, S. M., Aha, P. M., Parker, M. H., Blake, W. J., Baynes, B. M., & Lipovšek, D. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp182 · Cited by 33 · see citing works

Restriction Enzymes as a Target for DNA-Based Sensing and Structural Rearrangement

Buckhout‐White, S., Person, C., Medintz, I. L., et al. (2018) · ACS Omega · doi:10.1021/acsomega.7b01333 · Cited by 21 · see citing works

[Bsp153AI and BspM39I--new isoschizomers of PvuII restriction enzyme].

Kalugin, A. A., Rina, M. D., Eldarov, M. A., et al. (1996) · PubMed

Restriction endonucleases and their applications

Szalay, A. A., Mackey, C. J., & Langridge, W. H. R. (1979) · Enzyme and Microbial Technology · doi:10.1016/0141-0229(79)90022-x · Cited by 4 · see citing works