Cited by 1,716

RNAhybrid: microRNA target prediction easy, fast and flexible

Kruger, J., Rehmsmeier, M.·2006·Nucleic Acids Research

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1093/nar/gkl243

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

No references could be resolved yet.

Research works printed but not linked: 22

  1. [1]Ambros V. microRNAs: Tiny Regulators with Great Potential Cell 2001 107 823 826 11779458
  2. [2]Bartel D.P. MicroRNAs: Genomics, Biogenesis, Mechanism, and Function Cell 2004 116 281 297 14744438
  3. [3]Carthew R.W. Gene regulation by microRNAs Curr. Opin. Genet. Dev. 2006 16 203 208 16503132
  4. [4]Griffiths-Jones S. Grocock R.J. van Dongen S. Bateman A. Enright A.J. miRBase: microRNA sequences, targets and gene nomenclature Nucleic Acids Res. 2006 34 D140 D144 16381832 PMC1347474
  5. [5]Bentwich I. Avniel A. Karov Y. Aharonov R. Gilad S. Barad O. Barzilai A. Einat P. Einav U. Meiri E. Identification of hundreds of conserved and nonconserved human microRNAs Nature Genet. 2005 37 766 770 15965474
  6. [6]Lewis B.P. Burge C.B. Bartel D.P. Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets Cell 2005 120 15 20 15652477
  7. [7]Sethupathy P. Corda B. Hatzigeorgiou A.G. TarBase: a comprehensive database of experimentally supported animal microRNA targets RNA 2006 12 192 197 16373484 PMC1370898
  8. [8]Rhoades M.W. Reinhart B.J. Lim L.P. Burge C.B. Bartel B. Bartel D.P. Prediction of plant microRNA targets Cell 2002 110 513 520 12202040
  9. [9]Lewis B.P. Shih I.H. Jones-Rhoades M.W. Bartel D.P. Burge C.B. Prediction of mammalian microRNA targets Cell 2003 115 787 798 14697198
  10. [10]Stark A. Brennecke J. Russel R.B. Cohen S.M. Identification of Drosophila MicroRNA Targets PLoS Biol. 2003 1 e60 14691535 PMC270017
  11. [11]Brennecke J. Stark A. Russell R.B. Cohen S.M. Principles of MicroRNA–Target Recognition PLoS Biol. 2005 3 e85 15723116 PMC1043860
  12. [12]Rajewsky N. Socci N.D. Computational identification of microRNA targets Dev. Biol. 2004 267 529 535 15013811
  13. [13]Lall S. Grün D. Krek A. Chen K. Wang Y.L. Dewey C.N. Sood P. Colombo T. Bray N. Macmenamin P. A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans Curr. Biol. 2006 16 460 471 16458514
  14. [14]John B. Enright A.J. Aravin A. Tuschl T. Sander C. Marks D.S. Human MicroRNA targets PLoS Biol. 2004 2 e363 15502875 PMC521178
  15. [15]Kiriakidou M. Nelson P.T. Kouranov A. Fitziev P. Bouyioukos C. Mourelatos Z. Hatzigeorgiou A. A combined computational-experimental approach predicts human microRNA targets Genes Dev. 2004 18 1165 1178 15131085 PMC415641
  16. [16]Rehmsmeier M. Steffen P. Höchsmann M. Giegerich R. Fast and effective prediction of microRNA/target duplexes RNA 2004 10 1507 1517 15383676 PMC1370637
  17. [17]Zuker M. Stiegler P. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information Nucleic Acids Res. 1981 9 133 148 6163133 PMC326673
  18. [18]Grosshans H. Slack F.J. Micro-RNAs: small is plentiful J. Cell Biol. 2002 156 17 21 11781331 PMC2173595
  19. [19]Zhang Y. miRU: an automated plant miRNA target prediction server Nucleic Acids Res. 2005 33 Web Server issue W701 W704 15980567 PMC1160144
  20. [20]Abbott A.L. Alvarez-Saavedra E. Miska E. Lau N.C. Bartel D.P. Horvitz H.R. Ambros V. The let-7 MicroRNA Family Members mir-48, mir-84, and mir-241 Function Together to Regulate Developmental Timing in Caenorhabditis elegans Dev. Cell 2005 9 403 414 16139228 PMC3969732
  21. [21]Burglin T.R. Ruvkun G. The Caenorhabditis elegans homeobox gene cluster Curr. Opin. Genet. Dev. 1993 3 615 620 7902148
  22. [22]Hsu V. Zobel C.L. Lambie E.J. Schedl T. Kornfeld K. Caenorhabditis elegans lin-45 raf is Essential for Larval Viability, Fertility and the Induction of Vulval Cell Fates Genetics 2002 160 481 492 11861555 PMC1461998

Cited by

Sorted by citations

Authors
Kruger, J., & Rehmsmeier, M.
Venue
Nucleic Acids Research
Published
2006-07-01
Volume
34
Issue
Web Server
Pages
W451-W454
ISSN
  • 0305-1048
  • 1362-4962
Cited by
1,716
References
0
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review