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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
Open accessAbstract
JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.
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Boyle, A. P., Hong, E. L., Hariharan, M., Cheng, Y., Schaub, M. A., Kasowski, M., Karczewski, K. J., Park, J., Hitz, B. C., Weng, S., et al. (2012) · Genome Research · doi:10.1101/gr.137323.112 · Cited by 2,722
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Self-citationDNA-binding factors shape the mouse methylome at distal regulatory regions
Stadler, M. B., Murr, R., Burger, L., Ivanek, R., Lienert, F., Schöler, A., Nimwegen, E. V., Wirbelauer, C., Oakeley, E. J., Gaidatzis, D., et al. (2011) · Nature · doi:10.1038/nature10716 · Cited by 1,383
Metadata
- Authors
- Bryne, J. C., Valen, E., Tang, M.-H. E., Marstrand, T., Winther, O., da Piedade, I., Krogh, A., Lenhard, B., & Sandelin, A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2007-12-23
- Volume
- 36
- Issue
- Database
- Pages
- D102-D106
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2095718954
- Cited by
- 692
- References
- 2
- FWCI
- 15.45
- Type
- journal article
- Language
- en
- Open access
- gold
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- Bryne, J. C., Valen, E., Tang, M.-H. E., Marstrand, T., Winther, O., da Piedade, I., Krogh, A., Lenhard, B., & Sandelin, A. (2007). JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Research. https://doi.org/10.1093/nar/gkm955
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
