The DOI matches its Crossref record; 26 of the 26 references it cites were found in a registry or an index.
ATTED-II provides coexpressed gene networks for Arabidopsis
Open accessAbstract
ATTED-II (http://atted.jp) is a database of gene coexpression in Arabidopsis that can be used to design a wide variety of experiments, including the prioritization of genes for functional identification or for studies of regulatory relationships. Here, we report updates of ATTED-II that focus especially on functionalities for constructing gene networks with regard to the following points: (i) introducing a new measure of gene coexpression to retrieve functionally related genes more accurately, (ii) implementing clickable maps for all gene networks for step-by-step navigation, (iii) applying Google Maps API to create a single map for a large network, (iv) including information about protein-protein interactions, (v) identifying conserved patterns of coexpression and (vi) showing and connecting KEGG pathway information to identify functional modules. With these enhanced functions for gene network representation, ATTED-II can help researchers to clarify the functional and regulatory networks of genes in Arabidopsis.
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Cited by
Mutwil, M., Klie, S., Tohge, T., Giorgi, F. M., Wilkins, O., Campbell, M. M., Fernie, A. R., Usadel, B., Nikoloski, Z., & Persson, S. (2011) · The Plant Cell · doi:10.1105/tpc.111.083667 · Cited by 299
Functional Analysis of Transcription Factors in Arabidopsis
Mitsuda, N., & Ohme-Takagi, M. (2009) · Plant and Cell Physiology · doi:10.1093/pcp/pcp075 · Cited by 294
Metadata
- Authors
- Obayashi, T., Hayashi, S., Saeki, M., Ohta, H., & Kinoshita, K.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-01-01
- Volume
- 37
- Issue
- Database
- Pages
- D987-D991
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W1979178971
- Cited by
- 366
- References
- 26
- FWCI
- 15.39
- Type
- journal article
- Language
- en
- Open access
- gold
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- Obayashi, T., Hayashi, S., Saeki, M., Ohta, H., & Kinoshita, K. (2009). ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Research. https://doi.org/10.1093/nar/gkn807
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