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The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
Open accessAbstract
The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD, http://umbbd.msi.umn.edu/) began in 1995 and now contains information on almost 1200 compounds, over 800 enzymes, almost 1300 reactions and almost 500 microorganism entries. Besides these data, it includes a Biochemical Periodic Table (UM-BPT) and a rule-based Pathway Prediction System (UM-PPS) (http://umbbd.msi.umn.edu/predict/) that predicts plausible pathways for microbial degradation of organic compounds. Currently, the UM-PPS contains 260 biotransformation rules derived from reactions found in the UM-BBD and scientific literature. Public access to UM-BBD data is increasing. UM-BBD compound data are now contributed to PubChem and ChemSpider, the public chemical databases. A new mirror website of the UM-BBD, UM-BPT and UM-PPS is being developed at ETH Zürich to improve speed and reliability of online access from anywhere in the world.
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Metadata
- Authors
- Gao, J., Ellis, L. B. M., & Wackett, L. P.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-09-18
- Volume
- 38
- Issue
- suppl_1
- Pages
- D488-D491
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2121249519
- Cited by
- 347
- References
- 0
- FWCI
- 10.88
- Type
- journal article
- Language
- en
- Open access
- gold
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- Gao, J., Ellis, L. B. M., & Wackett, L. P. (2010). The University of Minnesota Biocatalysis/Biodegradation Database: improving public access. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp771
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