The DOI matches its Crossref record; 80 of the 80 references it cites were found in a registry or an index.
PMRD: plant microRNA database
Open accessAbstract
MicroRNAs (miRNA) are approximately 21 nucleotide-long non-coding small RNAs, which function as post-transcriptional regulators in eukaryotes. miRNAs play essential roles in regulating plant growth and development. In recent years, research into the mechanism and consequences of miRNA action has made great progress. With whole genome sequence available in such plants as Arabidopsis thaliana, Oryza sativa, Populus trichocarpa, Glycine max, etc., it is desirable to develop a plant miRNA database through the integration of large amounts of information about publicly deposited miRNA data. The plant miRNA database (PMRD) integrates available plant miRNA data deposited in public databases, gleaned from the recent literature, and data generated in-house. This database contains sequence information, secondary structure, target genes, expression profiles and a genome browser. In total, there are 8433 miRNAs collected from 121 plant species in PMRD, including model plants and major crops such as Arabidopsis, rice, wheat, soybean, maize, sorghum, barley, etc. For Arabidopsis, rice, poplar, soybean, cotton, medicago and maize, we included the possible target genes for each miRNA with a predicted interaction site in the database. Furthermore, we provided miRNA expression profiles in the PMRD, including our local rice oxidative stress related microarray data (LC Sciences miRPlants_10.1) and the recently published microarray data for poplar, Arabidopsis, tomato, maize and rice. The PMRD database was constructed by open source technology utilizing a user-friendly web interface, and multiple search tools. The PMRD is freely available at http://bioinformatics.cau.edu.cn/PMRD. We expect PMRD to be a useful tool for scientists in the miRNA field in order to study the function of miRNAs and their target genes, especially in model plants and major crops.
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Cites
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miRBase: microRNA sequences, targets and gene nomenclature
Griffiths-Jones, S. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj112 · Cited by 3,950
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
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MicroRNAs AND THEIR REGULATORY ROLES IN PLANTS
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Computational Identification of Plant MicroRNAs and Their Targets, Including a Stress-Induced miRNA
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microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants
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Cited by
Magwanga, R. O., Lu, P., Kirungu, J. N., Lu, H., Wang, X., Cai, X., Zhou, Z., Zhang, Z., Salih, H., Wang, K., et al. (2018) · BMC Genetics · doi:10.1186/s12863-017-0596-1 · Cited by 285
Self-citationPlantGSEA: a gene set enrichment analysis toolkit for plant community
Yi, X., Du, Z., & Su, Z. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt281 · Cited by 276
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Metadata
- Authors
- Zhang, Z., Yu, J., Li, D., Zhang, Z., Liu, F., Zhou, X., Wang, T., Ling, Y., & Su, Z.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-10-06
- Volume
- 38
- Issue
- suppl_1
- Pages
- D806-D813
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2120794445
- Cited by
- 377
- References
- 80
- FWCI
- 24.56
- Type
- journal article
- Language
- en
- Open access
- gold
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- Zhang, Z., Yu, J., Li, D., Zhang, Z., Liu, F., Zhou, X., Wang, T., Ling, Y., & Su, Z. (2010). PMRD: plant microRNA database. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp818
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