The DOI matches its Crossref record; 16 of the 16 references it cites were found in a registry or an index.
REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
Open accessAbstract
REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data. Experimentally characterized homing endonucleases are also included. The fastest growing segment of REBASE contains the putative R-M systems found in the sequence databases. Comprehensive descriptions of the R-M content of all fully sequenced genomes are available including summary schematics. The contents of REBASE may be browsed from the web (http://rebase.neb.com) and selected compilations can be downloaded by ftp (ftp.neb.com). Additionally, monthly updates can be requested via email.
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Cites
The Pfam Protein Families Database
Bateman, A. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.276 · Cited by 14,000
Pruitt, K. D., Tatusova, T., & Maglott, D. R. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkl842 · Cited by 4,481
Environmental genome shotgun sequencing of the sargasso sea
Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., Wu, D., Paulsen, I., Nelson, K. E., Nelson, W., et al. (2004) · Science · doi:10.1126/science.1093857 · Cited by 4,376
The Universal Protein Resource (UniProt)
Bairoch, A. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki070 · Cited by 3,774
Real-Time DNA Sequencing from Single Polymerase Molecules
Eid, J., Fehr, A., Gray, J., Luong, K., Lyle, J., Otto, G., Peluso, P., Rank, D., Baybayan, P., Bettman, B., et al. (2009) · Science · doi:10.1126/science.1162986 · Cited by 3,732
The Pfam protein families database
Finn, R. D., Tate, J., Mistry, J., Coggill, P. C., Sammut, S. J., Hotz, H.-R., Ceric, G., Forslund, K., Eddy, S. R., Sonnhammer, E. L. L., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm960 · Cited by 1,845
Direct detection of DNA methylation during single-molecule, real-time sequencing
Flusberg, B. A., Webster, D. R., Lee, J. H., Travers, K. J., Olivares, E. C., Clark, T. A., Korlach, J., & Turner, S. W. (2010) · Nature Methods · doi:10.1038/nmeth.1459 · Cited by 1,460
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
Pruitt, K. D., Tatusova, T., Brown, G. R., & Maglott, D. R. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1079 · Cited by 1,149
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
Roberts, R. J. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg274 · Cited by 755
Self-citationBenson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., & Sayers, E. W. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn723 · Cited by 684
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REBASE--a database for DNA restriction and modification: enzymes, genes and genomes.
Roberts, R. J., Vincze, T., Posfai, J., & Macelis, D. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1046 · Cited by 728
Self-citationNucleases: diversity of structure, function and mechanism
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Stern, A., & Sorek, R. (2011) · BioEssays · doi:10.1002/bies.201000071 · Cited by 527
Oliveira, P. H., Touchon, M., & Rocha, E. P. C. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku734 · Cited by 354
Fang, G., Munera, D., Friedman, D. I., Mandlik, A., Chao, M. C., Banerjee, O., Feng, Z., Losic, B., Mahajan, M. C., Jabado, O. J., et al. (2012) · Nature Biotechnology · doi:10.1038/nbt.2432 · Cited by 360
Metadata
- Authors
- Roberts, R. J., Vincze, T., Posfai, J., & Macelis, D.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-10-21
- Volume
- 38
- Issue
- suppl_1
- Pages
- D234-D236
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2133620956
- Cited by
- 991
- References
- 16
- FWCI
- 18.12
- Type
- journal article
- Language
- en
- Open access
- gold
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