The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
FlyBase 101 - the basics of navigating FlyBase
Open accessAbstract
FlyBase (http://flybase.org) is the leading database and web portal for genetic and genomic information on the fruit fly Drosophila melanogaster and related fly species. Whether you use the fruit fly as an experimental system or want to apply Drosophila biological knowledge to another field of study, FlyBase can help you successfully navigate the wealth of available Drosophila data. Here, we review the FlyBase web site with novice and less-experienced users of FlyBase in mind and point out recent developments stemming from the availability of genome-wide data from the modENCODE project. The first section of this paper explains the organization of the web site and describes the report pages available on FlyBase, focusing on the most popular, the Gene Report. The next section introduces some of the search tools available on FlyBase, in particular, our heavily used and recently redesigned search tool QuickSearch, found on the FlyBase homepage. The final section concerns genomic data, including recent modENCODE (http://www.modencode.org) data, available through our Genome Browser, GBrowse.
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Cites
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Cited by
Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
Arnold, C. D., Gerlach, D., Stelzer, C., Boryń, Ł. M., Rath, M., & Stark, A. (2013) · Science · doi:10.1126/science.1232542 · Cited by 1,125
COMPARTMENTS: unification and visualization of protein subcellular localization evidence
Binder, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., Schneider, R., & Jensen, L. J. (2014) · Database · doi:10.1093/database/bau012 · Cited by 668
Huang, W., Massouras, A., Inoue, Y., Peiffer, J., Ràmia, M., Tarone, A. M., Turlapati, L., Zichner, T., Zhu, D., Lyman, R. F., et al. (2014) · Genome Research · doi:10.1101/gr.171546.113 · Cited by 661
Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
Lomsadze, A., Burns, P. D., & Borodovsky, M. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku557 · Cited by 612
Arnold, C. D., Gerlach, D., Spies, D., Matts, J. A., Sytnikova, Y. A., Pagani, M., Lau, N. C., & Stark, A. (2014) · Nature Genetics · doi:10.1038/ng.3009 · Cited by 175
Metadata
- Authors
- McQuilton, P., St. Pierre, S. E., Thurmond, J., & the FlyBase Consortium
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-11-29
- Volume
- 40
- Issue
- D1
- Pages
- D706-D714
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W1968050693
- Cited by
- 364
- References
- 1
- FWCI
- 31.15
- Type
- journal article
- Language
- en
- Open access
- gold
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- McQuilton, P., St. Pierre, S. E., Thurmond, J., & the FlyBase Consortium. (2012). FlyBase 101 - the basics of navigating FlyBase. Nucleic Acids Research. https://doi.org/10.1093/nar/gkr1030
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