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Cited by 663

The DOI matches its Crossref record; 68 of the 68 references it cites were found in a registry or an index.

The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes

Open access
Silva-Rocha, Rafael, Martínez-García, Esteban, Calles, Belén, Chavarría, Max, Arce-Rodríguez, Alejandro, de las Heras, Aitor, Páez-Espino, A. David, Durante-Rodríguez, Gonzalo, Kim, Juhyun, Nikel, Pablo I., Platero, Raúl, de Lorenzo, Víctor·2013·Nucleic Acids Research

Abstract

The 'Standard European Vector Architecture' database (SEVA-DB, http://seva.cnb.csic.es) was conceived as a user-friendly, web-based resource and a material clone repository to assist in the choice of optimal plasmid vectors for de-constructing and re-constructing complex prokaryotic phenotypes. The SEVA-DB adopts simple design concepts that facilitate the swapping of functional modules and the extension of genome engineering options to microorganisms beyond typical laboratory strains. Under the SEVA standard, every DNA portion of the plasmid vectors is minimized, edited for flaws in their sequence and/or functionality, and endowed with physical connectivity through three inter-segment insulators that are flanked by fixed, rare restriction sites. Such a scaffold enables the exchangeability of multiple origins of replication and diverse antibiotic selection markers to shape a frame for their further combination with a large variety of cargo modules that can be used for varied end-applications. The core collection of constructs that are available at the SEVA-DB has been produced as a starting point for the further expansion of the formatted vector platform. We argue that adoption of the SEVA format can become a shortcut to fill the phenomenal gap between the existing power of DNA synthesis and the actual engineering of predictable and efficacious bacteria.

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Metadata

Authors
Silva-Rocha, R., Martínez-García, E., Calles, B., Chavarría, M., Arce-Rodríguez, A., de las Heras, A., Páez-Espino, A. D., Durante-Rodríguez, G., Kim, J., Nikel, P. I., Platero, R., & de Lorenzo, V.
Venue
Nucleic Acids Research
Published
2012-11-22
Volume
41
Issue
D1
Pages
D666-D675
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2036559697
Cited by
663
References
68
FWCI
9.18
Type
journal article
Language
en
Open access
gold

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CoChat. (2026). Citation check: The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. https://app.cochat.ai/papers/10.1093/nar/gks1119
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Silva-Rocha, R., Martínez-García, E., Calles, B., Chavarría, M., Arce-Rodríguez, A., de las Heras, A., Páez-Espino, A. D., Durante-Rodríguez, G., Kim, J., Nikel, P. I., Platero, R., & de Lorenzo, V. (2013). The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic Acids Research. https://doi.org/10.1093/nar/gks1119

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.