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Mammalian Base Excision Repair: the Forgotten Archangel

Dianov, Grigory L., Hübscher, Ulrich·2013·Nucleic Acids Research
DOI 10.1093/nar/gkt076PMC PMC3616742
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  1. Caldecott, 2008, Single-strand break repair and genetic disease, Nat. Rev. Genet., 9, 619, 10.1038/nrg2380 · DOI
  2. Bartkova, 2005, DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis, Nature, 434, 864, 10.1038/nature03482 · DOI · Paper page
  3. Dianov, 1998, Repair pathways for processing of 8-oxoguanine in DNA by mammalian cell extracts, J. Biol. Chem., 273, 33811, 10.1074/jbc.273.50.33811 · DOI
  4. Dianov, 1992, Generation of single-nucleotide repair patches following excision of uracil residues from DNA, Mol. Cell. Biol., 12, 1605, 10.1128/MCB.12.4.1605 · DOI
  5. Dianov, 2000, Single nucleotide patch base excision repair is the major pathway for removal of thymine glycol from DNA in human cell extracts, J. Biol. Chem., 275, 11809, 10.1074/jbc.275.16.11809 · DOI
  6. Caldecott, 2001, Mammalian DNA single-strand break repair: an X-ra(y)ted affair, Bioessays, 23, 447, 10.1002/bies.1063 · DOI
  7. Lan, 2004, In situ analysis of repair processes for oxidative DNA damage in mammalian cells, Proc. Natl Acad. Sci. USA, 101, 13738, 10.1073/pnas.0406048101 · DOI · Paper page
  8. Okano, 2003, Spatial and temporal cellular responses to single-strand breaks in human cells, Mol. Cell. Biol., 23, 3974, 10.1128/MCB.23.11.3974-3981.2003 · DOI
  9. Lindahl, 1990, Repair of intrinsic DNA lesions, Mutat. Res., 238, 305, 10.1016/0165-1110(90)90022-4 · DOI
  10. Dianov, 1994, Reconstitution of the DNA base excision-repair pathway, Curr. Biol., 4, 1069, 10.1016/S0960-9822(00)00245-1 · DOI
  11. Kubota, 1996, Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase β and the XRCC1 protein, EMBO J., 15, 6662, 10.1002/j.1460-2075.1996.tb01056.x · DOI
  12. Lindahl, 1979, DNA glycosylases, endonucleases for apurinic/apyrimidinic sites and base excision repair, Prog. Nucleic Acids Res. Mol. Biol., 22, 135, 10.1016/S0079-6603(08)60800-4 · DOI
  13. Nash, 1997, XRCC1 protein interacts with one of two distinct forms of DNA ligase III, Biochemistry, 36, 5207, 10.1021/bi962281m · DOI
  14. Cappelli, 1997, Involvement of XRCC1 and DNA ligase III gene products in DNA base excision repair, J. Biol. Chem., 272, 23970, 10.1074/jbc.272.38.23970 · DOI
  15. Caldecott, 1995, Characterization of the XRCC1-DNA ligase III complex in vitro and its absence from mutant hamster cells, Nucleic Acids Res., 23, 4836, 10.1093/nar/23.23.4836 · DOI
  16. Boiteux, 2000, The human OGG1 gene: structure, functions, and its implication in the process of carcinogenesis, Arch. Biochem. Biophys., 377, 1, 10.1006/abbi.2000.1773 · DOI
  17. Aspinwall, 1997, Cloning and characterization of a functional human homolog of Escherichia coli endonuclease III, Proc. Natl Acad. Sci. USA, 94, 109, 10.1073/pnas.94.1.109 · DOI
  18. Wiederhold, 2004, AP endonuclease-independent DNA base excision repair in human cells, Mol. Cell, 15, 209, 10.1016/j.molcel.2004.06.003 · DOI
  19. Liu, 2008, Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria, Mol. Cell. Biol., 28, 4975, 10.1128/MCB.00457-08 · DOI
  20. Ward, 1997, Four mechanisms for the production of complex damage, Radiat. Res., 148, 481
  21. El-Khamisy, 2006, TDP1-dependent DNA single-strand break repair and neurodegeneration, Mutagenesis, 21, 219, 10.1093/mutage/gel024 · DOI
  22. Cortes Ledesma, 2009, A human 5'-tyrosyl DNA phosphodiesterase that repairs topoisomerase-mediated DNA damage, Nature, 461, 674, 10.1038/nature08444 · DOI
  23. Ahel, 2006, The neurodegenerative disease protein aprataxin resolves abortive DNA ligation intermediates, Nature, 443, 713, 10.1038/nature05164 · DOI
  24. Demple, 1994, Repair of oxidative damage to DNA: enzymology and biology, Annu. Rev. Biochem., 63, 915, 10.1146/annurev.bi.63.070194.004411 · DOI · Paper page
  25. Weinfeld, 2011, Tidying up loose ends: the role of polynucleotide kinase/phosphatase in DNA strand break repair, Trends Biochem. Sci., 36, 262, 10.1016/j.tibs.2011.01.006 · DOI
  26. El-Khamisy, 2005, Defective DNA single-strand break repair in spinocerebellar ataxia with axonal neuropathy-1, Nature, 434, 108, 10.1038/nature03314 · DOI
  27. Matsumoto, 1994, Proliferating cell nuclear antigen-dependent abasic site repair in Xenopus laevis oocytes: an alternative pathway of base excision DNA repair, Mol. Cell. Biol., 14, 6187, 10.1128/MCB.14.9.6187 · DOI
  28. Lindahl, 1995, Enzymes acting at strand interruptions in DNA, Philos. Trans. R. Soc. Lond. B Biol. Sci., 347, 57, 10.1098/rstb.1995.0009 · DOI
  29. Frosina, 1996, Two pathways for base excision repair in mammalian cells, J. Biol. Chem., 271, 9573, 10.1074/jbc.271.16.9573 · DOI
  30. Podlutsky, 2001, Human DNA polymerase beta initiates DNA synthesis during long-patch repair of reduced AP sites in DNA, EMBO J., 20, 1477, 10.1093/emboj/20.6.1477 · DOI
  31. Dianov, 1999, Role of DNA polymerase β in the excision step of long patch mammalian base excision repair, J. Biol. Chem., 274, 13741, 10.1074/jbc.274.20.13741 · DOI
  32. Klungland, 1997, Second pathway for completion of human DNA base excision-repair: reconstitution with purified proteins and requirement for DNase IV (FEN1), EMBO J., 16, 3341, 10.1093/emboj/16.11.3341 · DOI
  33. Hubscher, 2010, DNA Polymerases: Discovery, Characterization and Functions in Cellular DNA Transactions, 10.1142/7667 · DOI
  34. Parsons, 2003, DNA N-glycosylase deficient mice: a tale of redundancy, Mutat Res., 531, 165, 10.1016/j.mrfmmm.2003.05.001 · DOI
  35. Kuzminov, 2001, Single-strand interruptions in replicating chromosomes cause double-strand breaks, Proc. Natl Acad. Sci. USA, 98, 8241, 10.1073/pnas.131009198 · DOI
  36. Sobol, 1996, Requirement of mammalian DNA polymerase-β in base-excision repair, Nature, 379, 183, 10.1038/379183a0 · DOI
  37. Gao, 2011, DNA ligase III is critical for mtDNA integrity but not Xrcc1-mediated nuclear DNA repair, Nature, 471, 240, 10.1038/nature09773 · DOI
  38. Tebbs, 2003, Rescue of Xrcc1 knockout mouse embryo lethality by transgene-complementation, DNA Repair (Amst), 2, 1405, 10.1016/j.dnarep.2003.08.007 · DOI
  39. Cabelof, 2012, Haploinsufficiency in mouse models of DNA repair deficiency: modifiers of penetrance, Cell. Mol. Life Sci., 69, 727, 10.1007/s00018-011-0839-7 · DOI
  40. Prasad, 1996, Specific interaction of DNA polymerase beta and DNA ligase I in a multiprotein base excision repair complex from bovine testis, J. Biol. Chem., 271, 16000, 10.1074/jbc.271.27.16000 · DOI
  41. Caldecott, 2003, Protein-protein interactions during mammalian DNA single-strand break repair, Biochem. Soc. Trans., 31, 247, 10.1042/bst0310247 · DOI
  42. Akbari, 2004, Repair of U/G and U/A in DNA by UNG2-associated repair complexes takes place predominantly by short-patch repair both in proliferating and growth-arrested cells, Nucleic Acids Res., 32, 5486, 10.1093/nar/gkh872 · DOI
  43. Mol, 2000, DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination, Nature, 403, 451, 10.1038/35000249 · DOI
  44. Wilson, 2000, Passing the baton in base excision repair, Nat. Struct. Biol., 7, 176, 10.1038/82818 · DOI
  45. Parsons, 2005, DNA Polymerase beta promotes recruitment of DNA ligase IIIalpha-XRCC1 to sites of base excision repair, Biochemistry, 44, 10613, 10.1021/bi050085m · DOI
  46. Qi, 2012, Strandwise translocation of a DNA glycosylase on undamaged DNA, Proc. Natl Acad. Sci. USA, 109, 1086, 10.1073/pnas.1111237108 · DOI
  47. Zharkov, 2010, Uracil-DNA glycosylase: structural, thermodynamic and kinetic aspects of lesion search and recognition, Mutat. Res., 685, 11, 10.1016/j.mrfmmm.2009.10.017 · DOI
  48. Parsons, 2005, End-damage-specific proteins facilitate recruitment or stability of X-ray cross-complementing protein 1 at the sites of DNA single-strand break repair, FEBS J., 272, 5753, 10.1111/j.1742-4658.2005.04962.x · DOI
  49. Althaus, 1999, Poly ADP-ribosylation: a DNA break signal mechanism, Mol. Cell Biochem., 193, 5, 10.1023/A:1006975002262 · DOI
  50. Pleschke, 2000, Poly(ADP-ribose) binds to specific domains in DNA damage checkpoint proteins, J. Biol. Chem., 275, 40974, 10.1074/jbc.M006520200 · DOI
  51. Ahel, 2008, Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins, Nature, 451, 81, 10.1038/nature06420 · DOI
  52. Woodhouse, 2008, Poly ADP-ribose polymerase-1: An international molecule of mystery, DNA Repair (Amst), 7, 1077, 10.1016/j.dnarep.2008.03.009 · DOI
  53. Satoh, 1992, Role of poly(ADP-ribose) formation in DNA repair, Nature, 356, 356, 10.1038/356356a0 · DOI
  54. Allinson, 2003, Poly(ADP-ribose) polymerase in base excision repair: always engaged, but not essential for DNA damage processing, Acta. Biochim. Pol., 50, 169, 10.18388/abp.2003_3724 · DOI
  55. Woodhouse, 2008, Poly(ADP-ribose) polymerase-1 modulates DNA repair capacity and prevents formation of DNA double strand breaks, DNA Repair, 7, 932, 10.1016/j.dnarep.2008.03.017 · DOI
  56. Parsons, 2005, Poly(ADP-ribose) polymerase-1 protects excessive DNA strand breaks from deterioration during repair in human cell extracts, FEBS J., 272, 2012, 10.1111/j.1742-4658.2005.04628.x · DOI
  57. Wang, 1995, Mice lacking ADPRT and poly(ADP-ribosyl)ation develop normally but are susceptible to skin disease, Genes Dev., 9, 509, 10.1101/gad.9.5.509 · DOI
  58. de Murcia, 1997, Requirement of poly(ADP-ribose) polymerase in recovery from DNA damage in mice and in cells, Proc. Natl Acad. Sci. USA, 94, 7303, 10.1073/pnas.94.14.7303 · DOI
  59. Srivastava, 1999, DNA polymerase beta expression differences in selected human tumors and cell lines, Carcinogenesis, 20, 1049, 10.1093/carcin/20.6.1049 · DOI
  60. Fan, 2007, XRCC1 down-regulation in human cells leads to DNA-damaging agent hypersensitivity, elevated sister chromatid exchange, and reduced survival of BRCA2 mutant cells, Environ. Mol. Mutagen., 48, 491, 10.1002/em.20312 · DOI
  61. Horton, 2008, XRCC1 and DNA polymerase beta in cellular protection against cytotoxic DNA single-strand breaks, Cell Res., 18, 48, 10.1038/cr.2008.7 · DOI
  62. Coquerelle, 1995, Overexpression of N-methylpurine-DNA glycosylase in Chinese hamster ovary cells renders them more sensitive to the production of chromosomal aberrations by methylating agents–a case of imbalanced DNA repair, Mutat Res., 336, 9, 10.1016/0921-8777(94)00035-5 · DOI
  63. Chan, 2007, Overexpression of DNA polymerase beta results in an increased rate of frameshift mutations during base excision repair, Mutagenesis, 22, 183, 10.1093/mutage/gel070 · DOI
  64. Chan, 2006, Base excision repair fidelity in normal and cancer cells, Mutagenesis, 21, 173, 10.1093/mutage/gel020 · DOI
  65. Frosina, 2000, Overexpression of enzymes that repair endogenous damage to DNA, Eur. J. Biochem., 267, 2135, 10.1046/j.1432-1327.2000.01266.x · DOI
  66. Klapacz, 2010, Frameshift mutagenesis and microsatellite instability induced by human alkyladenine DNA glycosylase, Mol. Cell, 37, 843, 10.1016/j.molcel.2010.01.038 · DOI
  67. Parsons, 2008, CHIP-mediated degradation and DNA damage-dependent stabilization regulate base excision repair proteins, Mol. Cell, 29, 477, 10.1016/j.molcel.2007.12.027 · DOI · Paper page
  68. Parsons, 2009, Ubiquitin ligase ARF-BP1/Mule modulates base excision repair, EMBO J., 28, 3207, 10.1038/emboj.2009.243 · DOI
  69. Khan, 2004, p14ARF is a component of the p53 response following ionizing irradiation of normal human fibroblasts, Oncogene, 23, 6040, 10.1038/sj.onc.1207824 · DOI
  70. Chen, 2005, ARF-BP1/Mule is a critical mediator of the ARF tumor suppressor, Cell, 121, 1071, 10.1016/j.cell.2005.03.037 · DOI
  71. Markkanen, 2011, Ubiquitylation of DNA polymerase lambda, FEBS Lett., 585, 2826, 10.1016/j.febslet.2011.03.069 · DOI
  72. Hubscher, 2011, DNA replication and repair bypass machines, Curr. Opin. Chem. Biol., 15, 627, 10.1016/j.cbpa.2011.08.009 · DOI
  73. Maga, 2007, 8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins, Nature, 447, 606, 10.1038/nature05843 · DOI
  74. Frouin, 2005, Phosphorylation of human DNA polymerase lambda by the cyclin-dependent kinase Cdk2/cyclin A complex is modulated by its association with proliferating cell nuclear antigen, Nucleic Acids Res., 33, 5354, 10.1093/nar/gki845 · DOI
  75. Markkanen, 2012, Regulation of oxidative DNA damage repair by DNA polymerase lambda and MutYH by cross-talk of phosphorylation and ubiquitination, Proc. Natl Acad. Sci. USA, 109, 437, 10.1073/pnas.1110449109 · DOI

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Metadata

Authors
Dianov, G. L., & Hübscher, U.
Venue
Nucleic Acids Research
Publisher
Oxford University Press (OUP)
Published
2013-02-12
Volume
41
Issue
6
Pages
3483-3490
ISSN
  • 1362-4962
  • 0305-1048
DOI
10.1093/nar/gkt076
PMC
PMC3616742
Cited by
363
References
6
Language
en
Licence
creativecommons.org/licenses/by-nc/3.0/ (vor, 1550 d)

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