The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
PDBsum additions
Open accessAbstract
PDBsum, http://www.ebi.ac.uk/pdbsum, is a website providing numerous pictorial analyses of each entry in the Protein Data Bank. It portrays the structural features of all proteins, DNA and ligands in the entry, as well as depicting the interactions between them. The latest features, described here, include annotation of human protein sequences with their naturally occurring amino acid variants, dynamic graphs showing the relationships between related protein domain architectures, analyses of ligand binding clusters across different experimental determinations of the same protein, analyses of tunnels in proteins and new search options.
Overview
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Citations
Cites
An integrated map of genetic variation from 1,092 human genomes
The 1000 Genomes Project Consortium (2012) · Nature · doi:10.1038/nature11632 · Cited by 7,711
Announcing the worldwide Protein Data Bank
Berman, H., Henrick, K., & Nakamura, H. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb1203-980 · Cited by 3,093
Cited by
Predicting Protein–Protein Interactions from the Molecular to the Proteome Level
Keskin, O., Tuncbag, N., & Gursoy, A. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00683 · Cited by 369
Zhang, C., Zheng, W., Freddolino, L., & Zhang, Y. (2018) · Journal of Molecular Biology · doi:10.1016/j.jmb.2018.03.004 · Cited by 80
Discovery of archaeal Fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
Moi, D., Nishio, S., Li, X., Valansi, C., Langleib, M., Brukman, N. G., Flyak, K., Dessimoz, C., de Sanctis, D., Tunyasuvunakool, K., et al. (2021) · doi:10.1101/2021.10.13.464100 · Cited by 23
Metadata
- Authors
- de Beer, T. A. P., Berka, K., Thornton, J. M., & Laskowski, R. A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2013-10-22
- Volume
- 42
- Issue
- D1
- Pages
- D292-D296
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W4240895940
- Cited by
- 299
- References
- 2
- FWCI
- 15.39
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: PDBsum additions. https://app.cochat.ai/papers/10.1093/nar/gkt940
- The paper
- de Beer, T. A. P., Berka, K., Thornton, J. M., & Laskowski, R. A. (2014). PDBsum additions. Nucleic Acids Research. https://doi.org/10.1093/nar/gkt940
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.