The DOI matches its Crossref record; 52 of the 52 references it cites were found in a registry or an index.
NCBI Viral Genomes Resource
Open accessAbstract
Recent technological innovations have ignited an explosion in virus genome sequencing that promises to fundamentally alter our understanding of viral biology and profoundly impact public health policy. Yet, any potential benefits from the billowing cloud of next generation sequence data hinge upon well implemented reference resources that facilitate the identification of sequences, aid in the assembly of sequence reads and provide reference annotation sources. The NCBI Viral Genomes Resource is a reference resource designed to bring order to this sequence shockwave and improve usability of viral sequence data. The resource can be accessed at http://www.ncbi.nlm.nih.gov/genome/viruses/ and catalogs all publicly available virus genome sequences and curates reference genome sequences. As the number of genome sequences has grown, so too have the difficulties in annotating and maintaining reference sequences. The rapid expansion of the viral sequence universe has forced a recalibration of the data model to better provide extant sequence representation and enhanced reference sequence products to serve the needs of the various viral communities. This, in turn, has placed increased emphasis on leveraging the knowledge of individual scientific communities to identify important viral sequences and develop well annotated reference virus genome sets.
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Cites
Database resources of the National Center for Biotechnology Information: update
Wheeler, D. L. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh073 · Cited by 10,641
Pruitt, K. D., Tatusova, T., & Maglott, D. R. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkl842 · Cited by 4,481
NCBI BLAST: a better web interface
Johnson, M., Zaretskaya, I., Raytselis, Y., Merezhuk, Y., McGinnis, S., & Madden, T. L. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn201 · Cited by 4,232
Consensus Proposals for a Unified System of Nomenclature of Hepatitis C Virus Genotypes *
Simmonds, P., Bukh, J., Combet, C., Deléage, G., Enomoto, N., Feinstone, S., Halfon, P., Inchauspé, G., Kuiken, C., Maertens, G., et al. (2005) · Hepatology · doi:10.1002/hep.20819 · Cited by 1,516
Federhen, S. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1178 · Cited by 1,436 · cited 1×
“Viral taxonomy within the NCBI Taxonomy database is based on the list of valid species names and classifications provided by the International Committee for the Taxonomy of Viruses (ICTV) (35, 36) .”
MethodBLAST: a more efficient report with usability improvements
Boratyn, G. M., Camacho, C., Cooper, P. S., Coulouris, G., Fong, A., Ma, N., Madden, T. L., Matten, W. T., McGinnis, S. D., Merezhuk, Y., et al. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt282 · Cited by 1,369
Emergence of Zaire Ebola Virus Disease in Guinea
Baize, S., Pannetier, D., Oestereich, L., Rieger, T., Koivogui, L., Magassouba, N., Soropogui, B., Sow, M. S., Keïta, S., De Clerck, H., et al. (2014) · New England Journal of Medicine · doi:10.1056/nejmoa1404505 · Cited by 1,366
Smith, D. B., Bukh, J., Kuiken, C., Muerhoff, S. A., Rice, C. M., Stapleton, J. T., & Simmonds, P. (2014) · Hepatology · doi:10.1002/hep.26744 · Cited by 1,353
The Universal Protein Resource (UniProt) in 2010
The UniProt Consortium (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp846 · Cited by 1,257
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
Gire, S. K., Goba, A., Andersen, K. G., Sealfon, R. S. G., Park, D. J., Kanneh, L., Jalloh, S., Momoh, M., Fullah, M., Dudas, G., et al. (2014) · Science · doi:10.1126/science.1259657 · Cited by 1,215
Research works printed but not linked: 7
- Bao, 2007, FLAN: a web server for influenza virus genome annotation, Nucleic Acids Res., 35, W280, 10.1093/nar/gkm354 · doi:10.1093/nar/gkm354
- Pourkarim, 2014, Molecular identification of hepatitis B virus genotypes/subgenotypes: revised classification hurdles and updated resolutions, World J. Gastroenterol., 20, 7152, 10.3748/wjg.v20.i23.7152 · doi:10.3748/wjg.v20.i23.7152
- Tanwar, 2012, Is there any value to hepatitis B virus genotype analysis, Curr. Gastroenterol. Rep., 14, 37, 10.1007/s11894-011-0233-5 · doi:10.1007/s11894-011-0233-5
- Jancovich, 2012, Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses
- Maan, 2007, Rapid cDNA synthesis and sequencing techniques for the genetic study of bluetongue and other dsRNA viruses, J. Virol. Methods, 143, 132, 10.1016/j.jviromet.2007.02.016 · doi:10.1016/j.jviromet.2007.02.016
- Resch, 2009, Virus variation resources at the National Center for Biotechnology Information: dengue virus, BMC Microbiol., 9, 65, 10.1186/1471-2180-9-65 · doi:10.1186/1471-2180-9-65
- Rozanov, 2004, A web-based genotyping resource for viral sequences, Nucleic Acids Res., 32, W654, 10.1093/nar/gkh419 · doi:10.1093/nar/gkh419
Cited by
O'Leary, N. A., Wright, M. W., Brister, J. R., Ciufo, S., Haddad, D., McVeigh, R., Rajput, B., Robbertse, B., Smith-White, B., Ako-Adjei, D., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1189 · Cited by 6,357
“Additional genomes for a given species are validated for taxonomy and completeness and then indexed as sequence ‘neighbors’ (52).”
BackgroundMethodSelf-citationManni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab199 · Cited by 6,187
NCBI Taxonomy: a comprehensive update on curation, resources and tools
Schoch, C. L., Ciufo, S., Domrachev, M., Hotton, C. L., Kannan, S., Khovanskaya, R., Leipe, D., Mcveigh, R., O’Neill, K., Robbertse, B., et al. (2020) · Database · doi:10.1093/database/baaa062 · Cited by 2,635
Pasolli, E., Asnicar, F., Manara, S., Zolfo, M., Karcher, N., Armanini, F., Beghini, F., Manghi, P., Tett, A., Ghensi, P., et al. (2019) · Cell · doi:10.1016/j.cell.2019.01.001 · Cited by 1,591
Massively multiplexed nucleic acid detection with Cas13
Ackerman, C. M., Myhrvold, C., Thakku, S. G., Freije, C. A., Metsky, H. C., Yang, D. K., Ye, S. H., Boehm, C. K., Kosoko-Thoroddsen, T.-S. F., Kehe, J., et al. (2020) · Nature · doi:10.1038/s41586-020-2279-8 · Cited by 803
Metadata
- Authors
- Brister, J. R., Ako-adjei, D., Bao, Y., & Blinkova, O.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-11-26
- Volume
- 43
- Issue
- D1
- Pages
- D571-D577
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2108982334
- Cited by
- 649
- References
- 52
- FWCI
- 7.06
- Type
- journal article
- Language
- en
- Open access
- gold
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