The DOI matches its Crossref record; 86 of the 86 references it cites were found in a registry or an index.
A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs
Open accessAbstract
In mammalian mitochondria, 22 species of tRNAs encoded in mitochondrial DNA play crucial roles in the translation of 13 essential subunits of the respiratory chain complexes involved in oxidative phosphorylation. Following transcription, mitochondrial tRNAs are modified by nuclear-encoded tRNA-modifying enzymes. These modifications are required for the proper functioning of mitochondrial tRNAs (mt tRNAs), and the absence of these modifications can cause pathological consequences. To date, however, the information available about these modifications has been incomplete. To address this issue, we isolated all 22 species of mt tRNAs from bovine liver and comprehensively determined the post-transcriptional modifications in each tRNA by mass spectrometry. Here, we describe the primary structures with post-transcriptional modifications of seven species of mt tRNAs which were previously uncharacterized, and provide revised information regarding base modifications in five other mt tRNAs. In the complete set of bovine mt tRNAs, we found 15 species of modified nucleosides at 118 positions (7.48% of total bases). This result provides insight into the molecular mechanisms underlying the decoding system in mammalian mitochondria and enables prediction of candidate tRNA-modifying enzymes responsible for each modification of mt tRNAs.
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WoLF PSORT: protein localization predictor
Horton, P., Park, K.-J., Obayashi, T., Fujita, N., Harada, H., Adams-Collier, C. J., & Nakai, K. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm259 · Cited by 4,127
Wallace, D. C. (2005) · Annual Review of Genetics · doi:10.1146/annurev.genet.39.110304.095751 · Cited by 3,185
Goto, Y.-I., Nonaka, I., & Horai, S. (1990) · Nature · doi:10.1038/348651a0 · Cited by 2,070
Codon—anticodon pairing: The wobble hypothesis
Crick, F. H. C. (1966) · Journal of Molecular Biology · doi:10.1016/s0022-2836(66)80022-0 · Cited by 2,029
Compilation of tRNA sequences and sequences of tRNA genes
Sprinzl, M. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki012 · Cited by 1,914
Exome sequencing as a tool for Mendelian disease gene discovery
Bamshad, M. J., Ng, S. B., Bigham, A. W., Tabor, H. K., Emond, M. J., Nickerson, D. A., & Shendure, J. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3031 · Cited by 1,673
Shoffner, J. M., Lott, M. T., Lezza, A. M. S., Seibel, P., Ballinger, S. W., & Wallace, D. C. (1990) · Cell · doi:10.1016/0092-8674(90)90059-n · Cited by 1,482
MODOMICS: a database of RNA modification pathways—2013 update
Machnicka, M. A., Milanowska, K., Osman Oglou, O., Purta, E., Kurkowska, M., Olchowik, A., Januszewski, W., Kalinowski, S., Dunin-Horkawicz, S., Rother, K. M., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1007 · Cited by 1,013
Trna: Structure, Biosynthesis, and Function
Söll, D. G., & RajBhandary, U. L. (1995) · Cited by 899
tRNAdb 2009: compilation of tRNA sequences and tRNA genes
Juhling, F., Morl, M., Hartmann, R. K., Sprinzl, M., Stadler, P. F., & Putz, J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn772 · Cited by 852
Cited by
Cozen, A. E., Quartley, E., Holmes, A. D., Hrabeta-Robinson, E., Phizicky, E. M., & Lowe, T. M. (2015) · Nature Methods · doi:10.1038/nmeth.3508 · Cited by 479
The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis
Schimmel, P. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2017.77 · Cited by 462
An integrated, structure- and energy-based view of the genetic code
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Mitochondrial translation requires folate-dependent tRNA methylation
Morscher, R. J., Ducker, G. S., Li, S. H.-J., Mayer, J. A., Gitai, Z., Sperl, W., & Rabinowitz, J. D. (2018) · Nature · doi:10.1038/nature25460 · Cited by 283
Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine
Kimura, S., Srisuknimit, V., McCarty, K. L., Dedon, P. C., Kranzusch, P. J., & Waldor, M. K. (2022) · Nature Communications · doi:10.1038/s41467-022-33714-x · Cited by 23
Metadata
- Authors
- Suzuki, T., & Suzuki, T.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-05-15
- Volume
- 42
- Issue
- 11
- Pages
- 7346-7357
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2117567932
- Cited by
- 309
- References
- 86
- FWCI
- 10.71
- Type
- journal article
- Language
- en
- Open access
- gold
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