The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
Open accessAbstract
EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and cofactors are regularly added to EcoCyc. New SmartTable tools allow users to browse collections of related EcoCyc content. SmartTables can also serve as repositories for user- or curator-generated lists. EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website.
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Cites
Caspi, R., Billington, R., Ferrer, L., Foerster, H., Fulcher, C. A., Keseler, I. M., Kothari, A., Krummenacker, M., Latendresse, M., Mueller, L. A., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1164 · Cited by 3,395
Self-citationPathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
Karp, P. D., Paley, S. M., Krummenacker, M., Latendresse, M., Dale, J. M., Lee, T. J., Kaipa, P., Gilham, F., Spaulding, A., Popescu, L., et al. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbp043 · Cited by 694
Self-citationEcoCyc: A comprehensive view of Escherichia coli biology
Keseler, I. M., Bonavides-Martinez, C., Collado-Vides, J., Gama-Castro, S., Gunsalus, R. P., Johnson, D. A., Krummenacker, M., Nolan, L. M., Paley, S., Paulsen, I. T., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn751 · Cited by 373 · cited 1×
“An initiative to represent ET pathways in EcoCyc was first described in 2009 (10) along with the subsequent addition of 11 ET pathways.”
MethodSelf-citation
Cited by
The Gene Ontology knowledgebase in 2023
The Gene Ontology Consortium, Aleksander, S. A., Balhoff, J., Carbon, S., Cherry, J. M., Drabkin, H. J., Ebert, D., Feuermann, M., Gaudet, P., Harris, N. L., et al. (2023) · GENETICS · doi:10.1093/genetics/iyad031 · Cited by 2,664
The MetaCyc database of metabolic pathways and enzymes
Caspi, R., Billington, R., Fulcher, C. A., Keseler, I. M., Kothari, A., Krummenacker, M., Latendresse, M., Midford, P. E., Ong, Q., Ong, W. K., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx935 · Cited by 894
Self-citationMeltome atlas—thermal proteome stability across the tree of life
Jarzab, A., Kurzawa, N., Hopf, T., Moerch, M., Zecha, J., Leijten, N., Bian, Y., Musiol, E., Maschberger, M., Stoehr, G., et al. (2020) · Nature Methods · doi:10.1038/s41592-020-0801-4 · Cited by 281
Yang, J. H., Bhargava, P., McCloskey, D., Mao, N., Palsson, B. O., & Collins, J. J. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.10.020 · Cited by 267
The complex rcs regulatory cascade.
Wall, E., Majdalani, N., & Gottesman, S. (2018) · Annual Review of Microbiology · doi:10.1146/annurev-micro-090817-062640 · Cited by 220
Metadata
- Authors
- Keseler, I. M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, D. A., Weaver, D., Collado-Vides, J., Paulsen, I., & Karp, P. D.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2016-11-28
- Volume
- 45
- Issue
- D1
- Pages
- D543-D550
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2560707317
- Cited by
- 524
- References
- 3
- FWCI
- 21.67
- Type
- journal article
- Language
- en
- Open access
- gold
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- CoChat. (2026). Citation check: The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. https://app.cochat.ai/papers/10.1093/nar/gkw1003
- The paper
- Keseler, I. M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, D. A., Weaver, D., Collado-Vides, J., . . . Karp, P. D. (2017). The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Research. https://doi.org/10.1093/nar/gkw1003
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
