HMMER web server: 2018 update

UniProt: the Universal Protein knowledgebase

Apweiler, R. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh131 · Cited by 7,593

Accelerated Profile HMM Searches

Eddy, S. R. (2011) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002195 · Cited by 6,975

The Pfam protein families database: towards a more sustainable future

Finn, R. D., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Mistry, J., Mitchell, A. L., Potter, S. C., Punta, M., Qureshi, M., Sangrador-Vegas, A., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1344 · Cited by 5,975

HMMER web server: interactive sequence similarity searching

Finn, R. D., Clements, J., & Eddy, S. R. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr367 · Cited by 5,952

Profile hidden Markov models

Eddy, S. R. (1998) · Bioinformatics · doi:10.1093/bioinformatics/14.9.755 · Cited by 5,515

Ensembl 2018

Zerbino, D. R., Achuthan, P., Akanni, W., Amode, M. R., Barrell, D., Bhai, J., Billis, K., Cummins, C., Gall, A., Girón, C. G., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1098 · Cited by 2,605

UniProt: the universal protein knowledgebase

The UniProt Consortium (2018) · Nucleic Acids Research · doi:10.1093/nar/gky092 · Cited by 2,043

The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database

Rawlings, N. D., Barrett, A. J., Thomas, P. D., Huang, X., Bateman, A., & Finn, R. D. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1134 · Cited by 1,749

InterPro in 2017—beyond protein family and domain annotations

Finn, R. D., Attwood, T. K., Babbitt, P. C., Bateman, A. G., Peer Bork, B., Bridge, A. J., Chang, H.-Y., Dosztányi, Z., El-Gebali, S., Fraser, M., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw1107 · Cited by 1,455

HMMER web server: 2015 update

Finn, R. D., Clements, J., Arndt, W. D., Miller, B. L., Wheeler, T. J., Schreiber, F., Bateman, A. G., & Eddy, S. R. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv397 · Cited by 911

Protein Conformational Change Is Essential for Reductive Activation of Lytic Polysaccharide Monooxygenase by Cellobiose Dehydrogenase

Breslmayr, E., Laurent, C. V. F. P., Scheiblbrandner, S., Jerkovic, A., Heyes, D. J., Oostenbrink, C., Ludwig, R., Hedison, T. M., Scrutton, N. S., & Kracher, D. (2020) · ACS Catalysis · doi:10.1021/acscatal.0c00754 · Cited by 26

Patterns of Sequence and Expression Diversification Associate Members of the PADRE Gene Family With Response to Fungal Pathogens

Didelon, M., Khafif, M., Godiard, L., Barbacci, A., & Raffaele, S. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00491 · Cited by 26

Extensive structural variation in the Bowman-Birk inhibitor family in common wheat (Triticum aestivum L.)

Xie, Y., Ravet, K., & Pearce, S. P. (2021) · BMC Genomics · doi:10.1186/s12864-021-07475-8 · Cited by 26

Proteome-wide prediction of bacterial carbohydrate-binding proteins as a tool for understanding commensal and pathogen colonisation of the vaginal microbiome

Bonnardel, F., Haslam, S. M., Dell, A., Feizi, T., Liu, Y., Tajadura‐Ortega, V., Akune, Y., Sykes, L., Bennett, P. R., MacIntyre, D. A., et al. (2021) · npj Biofilms and Microbiomes · doi:10.1038/s41522-021-00220-9 · Cited by 25

Physiological and transcriptional evaluation of sweet sorghum seedlings in response to single and combined drought and salinity stress

Wang, Z., Wei, Y., Zhao, Y., Wang, Y., Zou, F., Huang, S., Yang, X., Xu, Z., & Hu, H. (2021) · South African Journal of Botany · doi:10.1016/j.sajb.2021.11.029 · Cited by 26

Mapping and CRISPR homology-directed repair of a recessive white eye mutation in Plodia moths

Heryanto, C., Hanly, J. J., Mazo‐Vargas, A., Tendolkar, A., & Martin, A. (2022) · iScience · doi:10.1016/j.isci.2022.103885 · Cited by 26

Diversity and Functional Evolution of Terpene Synthases in Rosaceae

Zhang, A., Xiong, Y., Fang, J., Jiang, X., Wang, T., Liu, K., Peng, H., & Zhang, X. (2022) · Plants · doi:10.3390/plants11060736 · Cited by 26

Overexpression of the microtubule-binding protein CLIP-170 induces a +TIP network superstructure consistent with a biomolecular condensate

Wu, Y.-F. O., Bryant, A. T., Nelson, N. T., Madey, A. G., Fernandes, G. F., & Goodson, H. V. (2021) · PLoS ONE · doi:10.1371/journal.pone.0260401 · Cited by 26

NLRexpress—A bundle of machine learning motif predictors—Reveals motif stability underlying plant Nod-like receptors diversity

Martin, E. C., Spiridon, L. N., Goverse, A., & Petrescu, A. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.975888 · Cited by 26

Novel Stenotrophomonas maltophilia Bacteriophage as Potential Therapeutic Agent

Pirlar, R. F., Wagemans, J., Kunisch, F., Lavigne, R., Trampuž, A., & Moreno, M. G. (2022) · Pharmaceutics · doi:10.3390/pharmaceutics14102216 · Cited by 26

Genome-wide identification of the rubber tree superoxide dismutase (SOD) gene family and analysis of its expression under abiotic stress

Yu, W., GuangHong, K., Chao, J., Yin, T., Hai, T., Ya, H., He, L., & Zhang, H. (2022) · PeerJ · doi:10.7717/peerj.14251 · Cited by 28

Diversity and prevalence of type VI secretion system effectors in clinical Pseudomonas aeruginosa isolates

Robinson, L. A., Collins, A. C. Z., Murphy, R. A., Davies, J. C., & Allsopp, L. P. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1042505 · Cited by 29

Bioinformatics approaches for unveiling virus-host interactions

Iuchi, H., Kawasaki, J., Kubo, K., Fukunaga, T., Hokao, K., Yokoyama, G., Ichinose, A., Suga, K., & Hamada, M. (2023) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2023.02.044 · Cited by 25

Identification of further variation at the lipooligosaccharide outer core locus in Acinetobacter baumannii genomes and extension of the OCL reference sequence database for Kaptive

Sorbello, B. M., Cahill, S. M., & Kenyon, J. J. (2023) · Microbial Genomics · doi:10.1099/mgen.0.001042 · Cited by 26

Commensal bacteria signal through TLR5 and AhR to improve barrier integrity and prevent allergic responses to food

Kemter, A. M., Patry, R. T., Arnold, J. H., Hesser, L. A., Campbell, E., Ionescu, E., Mimee, M., Wang, S., & Nagler‐Anderson, C. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.113153 · Cited by 26

Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing

Bhattacharya, S., Wang, S., Reddy, D., Shen, S.-Y., Zhang, Y., Zhang, N., Li, H., Washburn, M., Florens, L., Shi, Y.-Y., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-26799-3 · Cited by 24

Asgard archaea reveal the conserved principles of ESCRT-III membrane remodeling

Souza, D. P., Espadas, J., Chaaban, S., Moody, E. R. R., Hatano, T., Balasubramanian, M., Williams, T. A., Roux, A., & Baum, B. (2025) · Science Advances · doi:10.1126/sciadv.ads5255 · Cited by 30

Use Chou’s 5-Steps Rule to Predict Remote Homology Proteins by Merging Grey Incidence Analysis and Domain Similarity Analysis

Lin, W., Xiao, X., Qiu, W., & Chou, K. (2020) · Natural Science · doi:10.4236/ns.2020.123016 · Cited by 25

Altered Metabolic Strategies: Elaborate Mechanisms Adopted by Oenococcus oeni in Response to Acid Stress

Qi, Y., Wang, H., Chen, X., Wei, G., Tao, S., & Fan, M. (2021) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.0c07599 · Cited by 26

rBPDL:Predicting RNA-Binding Proteins Using Deep Learning

Niu, M., Wu, J., Zou, Q., Liu, Z., & Xu, L. (2021) · IEEE Journal of Biomedical and Health Informatics · doi:10.1109/jbhi.2021.3069259 · Cited by 25

Functional and Comparative Analysis of Centromeres Reveals Clade-Specific Genome Rearrangements in Candida auris and a Chromosome Number Change in Related Species

Narayanan, A., Vadnala, R. N., Ganguly, P., Selvakumar, P., Rudramurthy, S. M., Prasad, R., Chakrabarti, A., Siddharthan, R., & Sanyal, K. (2021) · mBio · doi:10.1128/mbio.00905-21 · Cited by 25

Delineating the Role of Aedes aegypti ABC Transporter Gene Family during Mosquito Development and Arboviral Infection via Transcriptome Analyses

Kumar, V., Garg, S., Gupta, L., Gupta, K., Diagne, C. T., Missé, D., Pompon, J., Kumar, S., & Saxena, V. (2021) · Pathogens · doi:10.3390/pathogens10091127 · Cited by 25

Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria

Cummings, T., Gori, K. C., Sánchez‐Pulido, L., Gavriilidis, G., Moi, D., Wilson, A., Murchison, E. P., Dessimoz, C., Ponting, C. P., & Christophorou, M. A. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab317 · Cited by 25

Toward the Heterologous Biosynthesis of Plant Natural Products: Gene Discovery and Characterization

Wang, H., Guo, H., Wang, N., & Huo, Y. (2021) · ACS Synthetic Biology · doi:10.1021/acssynbio.1c00315 · Cited by 25

Recurrent Loss of Macrodomain Activity in Host Immunity and Viral Proteins

Delgado-Rodriguez, S. E., Ryan, A. P., & Daugherty, M. D. (2023) · Pathogens · doi:10.3390/pathogens12050674 · Cited by 26

Iron or sulfur respiration—an adaptive choice determining the fitness of a natronophilic bacterium Dethiobacter alkaliphilus in geochemically contrasting environments

Zavarzina, D. G., Merkel, A. Y., Klyukina, A. A., Elizarov, I. M., Pikhtereva, V. A., Rusakov, V. S., Chistyakova, N. I., Ziganshin, R., Maslov, А. А., & Gavrilov, S. N. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1108245 · Cited by 24

Complete Chloroplast Genomes and Phylogenetic Relationships of Bougainvillea spectabilis and Bougainvillea glabra (Nyctaginaceae)

Zhang, H., Huang, T., Zhou, Q., Sheng, Q., & Zhu, Z. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241713044 · Cited by 25

ECF-type ABC transporters for uptake of vitamins and transition metal ions into prokaryotic cells

Finkenwirth, F., & Eitinger, T. (2019) · Research in Microbiology · doi:10.1016/j.resmic.2019.06.007 · Cited by 25

Origins and Molecular Evolution of the NusG Paralog RfaH

Wang, B., Gumerov, V. M., Andrianova, E. P., Zhulin, I. B., & Artsimovitch, I. (2020) · mBio · doi:10.1128/mbio.02717-20 · Cited by 25

Comparative transcriptome analysis reveals an ABA-responsive regulation network associated with cell wall organization and oxidation reduction in sugar beet

Wang, X., Pi, Z., Liu, J., Li, X., Zou, Y., Wang, M., Liu, D., Wang, Q., & Wu, Z. (2020) · Plant Growth Regulation · doi:10.1007/s10725-020-00592-6 · Cited by 24

Genome-Wide Analysis of the Lateral Organ Boundaries Domain Gene Family in Brassica Napus

Xie, T., Zeng, L., Chen, X., Rong, H., Wu, J., Batley, J., Jiang, J., & Wang, Y. (2020) · Genes · doi:10.3390/genes11030280 · Cited by 24

Comprehensive In Silico Characterization and Expression Profiling of Nine Gene Families Associated with Calcium Transport in Soybean

Zeng, H., Zhao, B., Wu, H., Zhu, Y., & Chen, H. (2020) · Agronomy · doi:10.3390/agronomy10101539 · Cited by 25

Silicon flow from root to shoot in pepper: a comprehensive in silico analysis reveals a potential linkage between gene expression and hormone signaling that stimulates plant growth and metabolism

Gómez‐Merino, F. C., Trejo‐Téllez, L. I., García-Jiménez, A., Escobar-Sepúlveda, H. F., & Ramírez-Olvera, S. M. (2020) · PeerJ · doi:10.7717/peerj.10053 · Cited by 24

Grape Transcriptome Response to Powdery Mildew Infection: Comparative Transcriptome Profiling of Chinese Wild Grapes Provides Insights Into Powdery Mildew Resistance

Jiao, C., Sun, X., Yan, X., Xu, X., Yan, Q., Gao, M., Fei, Z., & Wang, X. (2021) · Phytopathology · doi:10.1094/phyto-01-21-0006-r · Cited by 24

Genome-wide identification, evolutionary relationship and expression analysis of AGO, DCL and RDR family genes in tea

Krishnatreya, D. B., Baruah, P. M., Dowarah, B., Chowrasia, S., Mondal, T. K., & Agarwala, N. (2021) · Scientific Reports · doi:10.1038/s41598-021-87991-5 · Cited by 24

Secretome Analysis of Arabidopsis–Trichoderma atroviride Interaction Unveils New Roles for the Plant Glutamate:Glyoxylate Aminotransferase GGAT1 in Plant Growth Induced by the Fungus and Resistance against Botrytis cinerea

González-López, M. D. C., Jijón-Moreno, S., Dautt‐Castro, M., Ovando‐Vázquez, C., Ziv, T., Horwitz, B. A., & Casas‐Flores, S. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22136804 · Cited by 24

Evolution of polarity protein BASL and the capacity for stomatal lineage asymmetric divisions

Nir, I., Amador, G. O., Gong, Y., Smoot, N. K., Cai, L., Shohat, H., & Bergmann, D. C. (2021) · Current Biology · doi:10.1016/j.cub.2021.11.013 · Cited by 24

Bacterial Outer Membrane Polysaccharide Export (OPX) Proteins Occupy Three Structural Classes with Selective β-Barrel Porin Requirements for Polymer Secretion

Saïdi, F., Mahanta, U., Panda, A., Kezzo, A. A., Jolivet, N. Y., Bitazar, R., John, G., Martinez, M. P., Mellouk, A., Calmettes, C., et al. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.01290-22 · Cited by 23

Genome-wide analyzation and functional characterization on the TPS family provide insight into the biosynthesis of mono-terpenes in the camphor tree

Yang, Z., Zhan, T., Xie, C., Huang, S. M., & Zheng, X. (2023) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2023.01.039 · Cited by 24

CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing

Zhou, F., Yu, X., Gan, R., Ren, K., Chen, C., Ren, C., Cui, M., Liu, Y., Gao, Y., Wang, S., et al. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad425 · Cited by 25

Syntrichia ruralis : emerging model moss genome reveals a conserved and previously unknown regulator of desiccation in flowering plants

Zhang, X., Ekwealor, J. T. B., Silva, A. T., Yu, L., Jones, A. K., Mishler, B. D., Nelson, A. D. L., & Oliver, M. J. (2024) · New Phytologist · doi:10.1111/nph.19620 · Cited by 24

A high‐throughput predictive method for sequence‐similar fold switchers

Kim, A. K., Looger, L. L., & Porter, L. L. (2021) · Biopolymers · doi:10.1002/bip.23416 · Cited by 24

Genome-wide identification, characterization and expression profiles of the CCD gene family in Gossypium species

Zhang, S., Guo, Y., Zhang, Y., Guo, J., Li, K., Fu, W., Jia, Z., Li, W., Tran, L. P., Jia, K., et al. (2021) · 3 Biotech · doi:10.1007/s13205-021-02805-9 · Cited by 25

Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services

Madeira, F., Madhusoodanan, N., Lee, J., Eusebi, A., Niewielska, A., Tivey, A. R., Meacham, S., López, R., & Butcher, S. (2024) · Current Protocols · doi:10.1002/cpz1.1065 · Cited by 23

The Historical Evolution and Significance of Multiple Sequence Alignment in Molecular Structure and Function Prediction

Zhang, C., Wang, Q., Li, Y., Teng, A., Hu, G., Wuyun, Q., & Zheng, W. H. (2024) · Biomolecules · doi:10.3390/biom14121531 · Cited by 29

Ecogenomic insights into the resilience of keystone Blastococcus Species in extreme environments: a comprehensive analysis

Sbissi, I., Chouikhi, F., Ghodhbane‐Gtari, F., & Gtari, M. (2025) · BMC Genomics · doi:10.1186/s12864-025-11228-2 · Cited by 23

The haplotype-resolved telomere-to-telomere genome and OMICS analyses reveal genetic responses to tapping in rubber tree

Cheng, H., Li, C., Yuan, Y., Wang, Z., Nie, Z., Wu, T., Qiao, J., Zhi, D., Wang, X., Wang, X., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-61527-1 · Cited by 25

Super-pangenome analyses across 35 accessions of 23 Avena species highlight their complex evolutionary history and extensive genomic diversity

Zhang, H., Liu, N., Wang, Y., Zheng, X., Li, W., Liu, Z., Liu, J., Wang, Y., Xing, L., Li, T., et al. (2025) · Nature Genetics · doi:10.1038/s41588-025-02294-z · Cited by 25

A Sister Lineage of Sampled Retroviruses Corroborates the Complex Evolution of Retroviruses

Wang, J., & Han, G. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa272 · Cited by 23

Bridgin connects the outer kinetochore to centromeric chromatin

Sridhar, S., Hori, T., Nakagawa, R., Fukagawa, T., & Sanyal, K. (2021) · Nature Communications · doi:10.1038/s41467-020-20161-9 · Cited by 22

The functional analysis of ABCG transporters in the adaptation of pigeon pea ( Cajanus cajan ) to abiotic stresses

Niu, L., Li, H., Song, Z., Dong, B., Cao, H., Liu, T., Du, T., Yang, W., Amin, R., Wang, L., et al. (2021) · PeerJ · doi:10.7717/peerj.10688 · Cited by 24

OsGERLP: A novel aluminum tolerance rice gene isolated from a local cultivar in Indonesia

Miftahudin, M., Roslim, D. I., Fendiyanto, M. H., Satrio, R. D., Zulkifli, A. S., Umaiyah, E. I., Chikmawati, T., Sulıstyanıngsıh, Y. C., Suharsono, S., Hartana, A., et al. (2021) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2021.02.019 · Cited by 23

Reduced free asparagine in wheat grain resulting from a natural deletion of TaASN-B2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality

Oddy, J., Alarcón‐Reverte, R., Wilkinson, M., Ravet, K., Raffan, S., Minter, A., Mead, A., Elmore, J. S., de Almeida, I. M., Cryer, N. C., et al. (2021) · BMC Plant Biology · doi:10.1186/s12870-021-03058-7 · Cited by 23

Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase

Teixeira, R. D., Holzschuh, F., & Schirmer, T. (2021) · Nature Communications · doi:10.1038/s41467-021-22492-7 · Cited by 23

Mining of Gram-Negative Surface-Active Enzybiotic Candidates by Sequence-Based Calculation of Physicochemical Properties

Vázquez, R., Blanco-Gañán, S., Ruiz, S., & Garcı́a, P. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.660403 · Cited by 23

Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System

Santana‐Molina, C., Gutierrez, F., & Devos, D. P. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evab125 · Cited by 23

Multiple Losses of MSH1, Gain of mtMutS, and Other Changes in the MutS Family of DNA Repair Proteins in Animals

Muthye, V., & Lavrov, D. V. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evab191 · Cited by 28

The Streptochaeta Genome and the Evolution of the Grasses

Seetharam, A. S., Yu, Y., Bélanger, S., Clark, L. G., Meyers, B. C., Kellogg, E. A., & Hufford, M. B. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.710383 · Cited by 23

Disentangling the Evolutionary History of Feo, the Major Ferrous Iron Transport System in Bacteria

Gómez-Garzón, C., Barrick, J. E., & Payne, S. M. (2022) · mBio · doi:10.1128/mbio.03512-21 · Cited by 23

Genomic and proteomic analysis of Tausonia pullulans reveals a key role for a GH15 glucoamylase in starch hydrolysis

Trochine, A., Bellora, N., Nizovoy, P., Durán, R., Greif, G., de García, V., Batthyány, C., Robello, C., & Libkind, D. (2022) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-022-12025-7 · Cited by 23

Genome-resolved insight into the reservoir of antibiotic resistance genes in aquatic microbial community

Goodarzi, Z., Asad, S., & Mehrshad, M. (2022) · Scientific Reports · doi:10.1038/s41598-022-25026-3 · Cited by 23

Substrate specificity and transglycosylation capacity of α-L-fucosidases across GH29 assessed by bioinformatics-assisted selection of functional diversity

Perna, V. N., Barrett, K., Meyer, A. S., & Zeuner, B. (2023) · Glycobiology · doi:10.1093/glycob/cwad029 · Cited by 24

FunARTS, the Fungal bioActive compound Resistant Target Seeker, an exploration engine for target-directed genome mining in fungi

Yılmaz, T. M., Mungan, M. D., Berasategui, A., & Ziemert, N. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad386 · Cited by 23

Evolution and diversification of CaM/CML gene family in green plants

Li, Q., Gao, L., Yu, F., Lü, S., & Yang, P. (2023) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2023.107922 · Cited by 23

Resistance against two lytic phage variants attenuates virulence and antibiotic resistance in Pseudomonas aeruginosa

García, J. C., Rebollar-Juaréz, X., Limones-Martínez, A., Santos-López, C. S., Toya, S., Maeda, T., Ceapă, C. D., Blasco, L., Tomás, M., Díaz-Velásquez, C. E., et al. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1280265 · Cited by 23

Characterization of cellulases from softening fruit for enzymatic depolymerization of cellulose

Edema, H., Ashraf, M. F., Samkumar, A., Jaakola, L., & Karppinen, K. (2024) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2024.122493 · Cited by 23

Genomic and transcriptional analysis of genes containing fibrinogen and IgSF domains in the schistosome vector Biomphalaria glabrata, with emphasis on the differential responses of snails susceptible or resistant to Schistosoma mansoni

Lu, L., Loker, E. S., Adema, C. M., Zhang, S.-M., & Bu, L. (2020) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0008780 · Cited by 23

Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota

Lavrinienko, A., Tukalenko, E., Mousseau, T. A., Thompson, L., Knight, R. D., Mappes, T., & Watts, P. C. (2020) · Scientific Data · doi:10.1038/s41597-020-00656-2 · Cited by 23

Protein language model-embedded geometric graphs power inter-protein contact prediction

Si, Y., & Yan, C. (2024) · eLife · doi:10.7554/elife.92184.3

Protein functional site annotation using local structure embeddings

Derry, A., Tartici, A., & Altman, R. B. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2513219122 · Cited by 21

Identification of HMG-box family establishes the significance of SOX6 in the malignant progression of glioblastoma

Jiang, L., Yang, H., Chen, T., Zhu, X., Ye, J., & Lv, K. (2020) · Aging · doi:10.18632/aging.103127 · Cited by 22

Synthesis and Antibacterial Evaluation of New Pyrazolo[3,4-d]pyrimidines Kinase Inhibitors

Greco, C., Catania, R., Balacco, D. L., Taresco, V., Musumeci, F., Alexander, C., Huett, A. S., & Schenone, S. (2020) · Molecules · doi:10.3390/molecules25225354 · Cited by 22

Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes

Lyall, R., Nikoloski, Z., & Gechev, T. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21239131 · Cited by 22

Phylogeny Reveals Novel HipA-Homologous Kinase Families and Toxin-Antitoxin Gene Organizations

Gerdes, K., Bærentsen, R. L., & Brodersen, D. E. (2021) · mBio · doi:10.1128/mbio.01058-21 · Cited by 23

LPA2 protein is involved in photosystem II assembly in Chlamydomonas reinhardtii

Cecchin, M., Jeong, J., Son, W., Kim, M., Park, S., Zuliani, L., Cazzaniga, S., Pompa, A., Kang, C. Y., Bae, S., et al. (2021) · The Plant Journal · doi:10.1111/tpj.15405 · Cited by 22

The CaCA superfamily genes in Saccharum: comparative analysis and their functional implications in response to biotic and abiotic stress

Su, W., Zhang, C., Wang, D., Ren, Y., Sun, T., Feng, J., Su, Y., Xu, L., Shi, M., & Que, Y. (2021) · BMC Genomics · doi:10.1186/s12864-021-07828-3 · Cited by 22

Mungbean DIRIGENT Gene Subfamilies and Their Expression Profiles Under Salt and Drought Stresses

Xu, W., Liu, T., Zhang, H., & Zhu, H. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.658148 · Cited by 22

Silencing of Opisthorchis viverrini Tetraspanin Gene Expression Results in Reduced Secretion of Extracellular Vesicles

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Genetic variation in a tandemly duplicated TPS gene cluster contributes to the diversity of aroma in lychee fruit

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Genome-Wide Characterization of Cucumber (Cucumis sativus L.) GRAS Genes and Their Response to Various Abiotic Stresses

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PSSP-MVIRT: peptide secondary structure prediction based on a multi-view deep learning architecture

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Bioinformatic Analysis of the Campylobacter jejuni Type VI Secretion System and Effector Prediction

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Fine Mapping of a Vigor QTL in Chickpea (Cicer arietinum L.) Reveals a Potential Role for Ca4_TIFY4B in Regulating Leaf and Seed Size

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Pathogenic Leptospira Evolved a Unique Gene Family Comprised of Ricin B-Like Lectin Domain-Containing Cytotoxins

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Acetylated Xylan Degradation by Glycoside Hydrolase Family 10 and 11 Xylanases from the White-rot Fungus Phanerochaete chrysosporium

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Involvement of a Phage-Encoded Wzy Protein in the Polymerization of K127 Units To Form the Capsular Polysaccharide of Acinetobacter baumannii Isolate 36-1454

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