HMMER web server: 2018 update

UniProt: the Universal Protein knowledgebase

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Accelerated Profile HMM Searches

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The Pfam protein families database: towards a more sustainable future

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HMMER web server: interactive sequence similarity searching

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Profile hidden Markov models

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Ensembl 2018

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UniProt: the universal protein knowledgebase

The UniProt Consortium (2018) · Nucleic Acids Research · doi:10.1093/nar/gky092 · Cited by 2,043

The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database

Rawlings, N. D., Barrett, A. J., Thomas, P. D., Huang, X., Bateman, A., & Finn, R. D. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1134 · Cited by 1,749

InterPro in 2017—beyond protein family and domain annotations

Finn, R. D., Attwood, T. K., Babbitt, P. C., Bateman, A. G., Peer Bork, B., Bridge, A. J., Chang, H.-Y., Dosztányi, Z., El-Gebali, S., Fraser, M., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw1107 · Cited by 1,455

HMMER web server: 2015 update

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Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases

Zhang, Z., Dong, M., Zallot, R., Blackburn, G. M., Wang, N., Wang, C., Chen, L., Baumann, P., Wu, Z., Wang, Z., et al. (2022) · ACS Catalysis · doi:10.1021/acscatal.2c05405 · Cited by 16

CIPDB: A biological structure databank for studying cation and π interactions

Yang, J., Wang, F., Wang, M., Wang, D., Zhou, Z., Hao, G., Li, Q. X., & Yang, G. (2023) · Drug Discovery Today · doi:10.1016/j.drudis.2023.103546 · Cited by 18

A unique mRNA decapping complex in trypanosomes

Krämer, S., Karolak, N. K., Odenwald, J., Gabiatti, B., Londoño, P. A. C., Zavřelová, A., Freire, E. R., Almeida, K. S., Braune, S., Moreira, C. M. D. N., et al. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad497 · Cited by 17

Improving protein structure prediction with extended sequence similarity searches and deep‐learning‐based refinement in CASP15

Oda, T. (2023) · Proteins: Structure, Function, and Bioinformatics · doi:10.1002/prot.26551 · Cited by 17

Novel BRICHOS-Related Antimicrobial Peptides from the Marine Worm Heteromastus filiformis: Transcriptome Mining, Synthesis, Biological Activities, and Therapeutic Potential

Panteleev, P. V., Safronova, V. N., Duan, S., Komlev, A. S., Bolosov, I. A., Kruglikov, R. N., Kombarova, T. I., Korobova, O. V., Pereskokova, E. S., Borzilov, A. I., et al. (2023) · Marine Drugs · doi:10.3390/md21120639 · Cited by 19

The mitochondrial respiratory chain from Rhodotorula mucilaginosa, an extremophile yeast

Castañeda-Támez, P., Chiquete‐Félix, N., Uribe‐Carvajal, S., & Cabrera‐Orefice, A. (2024) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2024.149035 · Cited by 17

Genome-wide identification of the N6-methyladenosine regulatory genes reveals NtFIP37B increases drought resistance of tobacco (Nicotiana tabacum L.)

Su, H., Meng, L., Qu, Z., Zhang, W., Liu, N., Cao, P., & Jin, J. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-04813-2 · Cited by 15

Genome-wide identification of bHLH gene family and screening of candidate gene in response to salt stress in kiwifruit

Ye, D., Liu, J., Tian, X., Wen, X., Zhang, Y., Zhang, X., Sun, G., Xia, H., & Liang, D. (2024) · Environmental and Experimental Botany · doi:10.1016/j.envexpbot.2024.105774 · Cited by 17

Inside the Host: Understanding the Evolutionary Trajectories of Intracellular Parasitism

Bartošová‐Sojková, P., Butenko, A., Richtová, J., Fiala, I., Obornı́k, M., & Lukeš, J. (2024) · Annual Review of Microbiology · doi:10.1146/annurev-micro-041222-025305 · Cited by 16

Whole‐Genome Identification of the Flax Fatty Acid Desaturase Gene Family and Functional Analysis of the LuFAD2.1 Gene Under Cold Stress Conditions

Lu, J., Xiaoyang, C., Li, J., Wu, H., Wang, Y., Di, P., Deyholos, M. K., & Zhang, J. (2024) · Plant Cell & Environment · doi:10.1111/pce.15284 · Cited by 18

Evolutionary history of magnoliid genomes and benzylisoquinoline alkaloid biosynthesis

Hu, Y., Wang, J., Liu, L., Yi, X., Wang, X., Wang, J., Hao, Y., Qin, L., Li, K., Feng, Y., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-59343-8 · Cited by 17

Genome-Wide Identification and Expression Profiles of Myosin Genes in the Pacific White Shrimp, Litopenaeus vannamei

Zhang, X., Yuan, J., Zhang, X., Liu, C., Li, F., & Xiang, J. (2019) · Frontiers in Physiology · doi:10.3389/fphys.2019.00610 · Cited by 17

Horizontally Acquired Quorum-Sensing Regulators Recruited by the PhoP Regulatory Network Expand the Host Adaptation Repertoire in the Phytopathogen Pectobacterium brasiliense

Rabelo, D. B., Nkomo, N. P., Shyntum, D. Y., & Moleleki, L. (2020) · mSystems · doi:10.1128/msystems.00650-19 · Cited by 17

A cytoskeletal protein complex is essential for division of intracellular amastigotes of Leishmania mexicana

Kelly, F. D., Tran, K. D., Hatfield, J., Schmidt, K., Sánchez, M. A., & Landfear, S. M. (2020) · Journal of Biological Chemistry · doi:10.1074/jbc.ra120.014065 · Cited by 16

Transcription Factors in the Fungus Aspergillus nidulans: Markers of Genetic Innovation, Network Rewiring and Conflict between Genomics and Transcriptomics

Etxebeste, O. (2021) · Journal of Fungi · doi:10.3390/jof7080600 · Cited by 17

A new carbohydrate-active oligosaccharide dehydratase is involved in the degradation of ulvan

Bäumgen, M., Dutschei, T., Bartosik, D., Suster, C., Reisky, L., Gerlach, N., Stanetty, C., Mihovilovič, M. D., Schweder, T., Hehemann, J., et al. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.101210 · Cited by 19

Three Novel Bacteriophages, J5a, F16Ba, and z1a, Specific for Bacillus anthracis, Define a New Clade of Historical Wbeta Phage Relatives

Nakonieczna, A., Rutyna, P., Fedorowicz, M., Kwiatek, M., Mizak, L., & Łobocka, M. B. (2022) · Viruses · doi:10.3390/v14020213 · Cited by 17

Characterization of pectin methylesterase gene family and its possible role in juice sac granulation in navel orange (Citrus sinensis Osbeck)

Li, Z., Wu, L., Wang, C., Wang, Y., He, L., Wang, Z., Ma, X., Bai, F., Feng, G., Liu, J., et al. (2022) · BMC Genomics · doi:10.1186/s12864-022-08411-0 · Cited by 17

Antibiotic hyper-resistance in a class I aminoacyl-tRNA synthetase with altered active site signature motif

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Marsavelski, A., Ban, N., & Gruic-Sovulj, I. (2023) · Nature Communications · doi:10.1038/s41467-023-41244-3 · Cited by 15

Comparative pangenomic analysis of predominant human vaginal lactobacilli strains towards population-specific adaptation: understanding the role in sustaining a balanced and healthy vaginal microenvironment

Bhattacharya, A., Das, S., Bhattacharjee, M. J., Mukherjee, A. K., & Khan, M. R. (2023) · BMC Genomics · doi:10.1186/s12864-023-09665-y · Cited by 16

ProtMamba: a homology-aware but alignment-free protein state space model

Sgarbossa, D., Malbranke, C., & Bitbol, A.-F. (2025) · Bioinformatics · doi:10.1093/bioinformatics/btaf348 · Cited by 27

Comparative genomics reveals the high diversity and adaptation strategies of Polaromonas from polar environments

Du, Y., He, C., Lloyd, K. G., Vishnivetskaya, T. A., Cui, H., Li, B., Gong, D., Fan, X., Zhang, D., Jiang, H., et al. (2025) · BMC Genomics · doi:10.1186/s12864-025-11410-6 · Cited by 16

The hidden Markov model and its applications in bioinformatics analysis

Ma, Y., Chen, H., Kang, J., Guo, X., Sun, C., Xu, J., Tao, J., Wei, S., Dong, Y., Tian, H., et al. (2025) · Genes & Diseases · doi:10.1016/j.gendis.2025.101729 · Cited by 20

Molecular Properties and New Potentials of Plant Nepenthesins

Bekalu, Z. E., Dionisio, G., & Brinch‐Pedersen, H. (2020) · Plants · doi:10.3390/plants9050570 · Cited by 16

Music of metagenomics—a review of its applications, analysis pipeline, and associated tools

Wajid, B., Anwar, F., Wajid, I., Nisar, H., Meraj, S., Zafar, A., AlShawaqfeh, M. K., Ekti, A. R., Khatoon, A., & Suchodolski, J. S. (2021) · Functional & Integrative Genomics · doi:10.1007/s10142-021-00810-y · Cited by 16

Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family

Jia, B., Wang, Y., Zhang, D., Li, W., Cui, H., Jin, J., Cai, X., Shen, Y., Wu, S., Guo, Y., et al. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222212192 · Cited by 16

Oxidation of 5‐hydroxymethylfurfural with a novel aryl alcohol oxidase from Mycobacterium sp. MS1601

Sayed, M., Gaber, Y., Junghus, F. V., Martín, E. V., Pyo, S., & Hatti‐Kaul, R. (2022) · Microbial Biotechnology · doi:10.1111/1751-7915.14052 · Cited by 15

The Evolutionary Kaleidoscope of Rhodopsins

Bulzu, P., Kavagutti, V., Andrei, A., & Ghai, R. (2022) · mSystems · doi:10.1128/msystems.00405-22 · Cited by 18

Genome-Wide Analysis of Snf2 Gene Family Reveals Potential Role in Regulation of Spike Development in Barley

Chen, G., Mishina, K., Zhu, H., Kikuchi, S., Sassa, H., Oono, Y., & Komatsuda, T. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms24010457 · Cited by 16

Plastid phylogenomics and molecular evolution of Thismiaceae (Dioscoreales)

Garrett, L. N., Viruel, J., Klimpert, N. J., Gomez, M. S., Lam, V. K. Y., Merckx, V. S. F. T., & Graham, S. W. (2023) · American Journal of Botany · doi:10.1002/ajb2.16141 · Cited by 16

Catalase Gene Family in Durum Wheat: Genome-Wide Analysis and Expression Profiling in Response to Multiple Abiotic Stress Conditions

Ghorbel, M., Zribi, I., Hlila, M. B., Bouali, N., & Brini, F. (2023) · Plants · doi:10.3390/plants12142720 · Cited by 16

Genome-Wide Identification, Evolution, and Expression Analysis of the WD40 Subfamily in Oryza Genus

Ke, S., Jiang, Y., Zhou, M., & Li, Y. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms242115776 · Cited by 16

Evolutionary flexibility and rigidity in the bacterial methylerythritol phosphate (MEP) pathway

Marshall, B., Amritkar, K., Wolfe, M. B., Kaçar, B., & Landick, R. C. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1286626 · Cited by 16

A Genome-Wide Identification and Expression Analysis of the Casparian Strip Membrane Domain Protein-like Gene Family in Pogostemon cablin in Response to p-HBA-Induced Continuous Cropping Obstacles

Su, Y., Haq, M. Z. U., Liu, X., Li, Y., Yu, J. H., Yang, D., Wu, Y., & Liu, Y. (2023) · Plants · doi:10.3390/plants12223901 · Cited by 16

Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea (Cicer arietinum L.) under salinity stress

Parveen, K., Saddique, M. A. B., Ali, Z., Rehman, S. U., Zaibunnisa, Z., Khan, Z., Waqas, M. S., Munir, M. Z., Hussain, N., & Muneer, M. A. (2023) · Gene · doi:10.1016/j.gene.2023.148088 · Cited by 16

Genome-Wide Analysis of the Oat (Avena sativa) HSP90 Gene Family Reveals Its Identification, Evolution, and Response to Abiotic Stress

Peng, J., Liu, S., Wu, J., Liu, T., Liu, B., Xiong, Y., Zhao, J., You, M., Lei, X., & Ma, X. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25042305 · Cited by 16

ESKtides: a comprehensive database and mining method for ESKAPE phage-derived antimicrobial peptides

Wu, H., Chen, R., Li, X., Zhang, Y., Zhang, J., Yang, Y., Wan, J., Zhou, Y., Chen, H., Li, J., et al. (2024) · Database · doi:10.1093/database/baae022 · Cited by 16

Identification and expression analysis of the Xyloglucan transglycosylase/hydrolase (XTH) gene family under abiotic stress in oilseed (Brassica napus L.)

Chen, J., Wan, H., Zhao, H., Dai, X., Wu, W., Liu, J., Xu, J., Yang, R., Xu, B., Zeng, C., et al. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-05121-5 · Cited by 16

Genome-wide identification, expression analysis of WRKY transcription factors in Citrus ichangensis and functional validation of CiWRKY31 in response to cold stress

Qu, J., Xiao, P., Zhao, Z., Wang, Y., Zeng, Y.-K., Zeng, X., & Liu, J. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-05320-0 · Cited by 16

Metabolic redundancy and specialisation of novel sulfide-oxidizing Sulfurimonas and Sulfurovum along the brine-seawater interface of the Kebrit Deep

Alamoudi, R., Barozzi, A., Michoud, G., Goethem, M. W. V., Odobel, C., Chen, Y., Marasco, R., & Daffonchio, D. G. (2025) · Environmental Microbiome · doi:10.1186/s40793-025-00669-7 · Cited by 16

Nematode extracellular protein interactome expands connections between signaling pathways

Nawrocka, W. I., Cheng, S., Hao, B., Rosen, M. C., Cortés, E., Baltrusaitis, E. E., Aziz, Z., Tang, L. T. H., Kovács, I. A., & Özkan, E. (2026) · Cell Genomics · doi:10.1016/j.xgen.2026.101161 · Cited by 14

NAC Family Transcription Factors in Carrot: Genomic and Transcriptomic Analysis and Responses to Abiotic Stresses

Hao, J.-N., Wang, Y., Duan, A., Liu, J.-X., Feng, K., & Xiong, A. (2020) · DNA and Cell Biology · doi:10.1089/dna.2019.5208 · Cited by 15

Comprehensive Network Analysis Reveals Alternative Splicing-Related lncRNAs in Hepatocellular Carcinoma

Wang, J., Wang, X., Bhat, A., Chen, Y., Xu, K., Mo, Y., Yi, S., & Zhou, Y. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00659 · Cited by 16

Putative LysM Effectors Contribute to Fungal Lifestyle

Suarez-Fernandez, M., Aragon-Perez, A., Lopez-Llorca, L., & López-Moya, F. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22063147 · Cited by 15

BBLN-1 is essential for intermediate filament organization and apical membrane morphology

Remmelzwaal, S., Geisler, F., Stucchi, R., van der Horst, S. E. M., Pasolli, M., Kroll, J. R., Jarosińska, O. D., Akhmanova, A. S., Richardson, C. A., Altelaar, M. A. F., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.03.069 · Cited by 16

Structural characterization of KKT4, an unconventional microtubule-binding kinetochore protein

Ludzia, P., Lowe, E. D., Marcianò, G., Mohammed, S., Redfield, C., & Akiyoshi, B. (2021) · Structure · doi:10.1016/j.str.2021.04.004 · Cited by 15

The 3D architecture and molecular foundations of de novo centriole assembly via bicentrioles

Pereira, S. G., Sousa, A. L., Nabais, C., Paixão, T., Holmes, A. J., Schorb, M., Goshima, G., Tranfield, E. M., Becker, J. D., & Bettencourt‐Dias, M. (2021) · Current Biology · doi:10.1016/j.cub.2021.07.063 · Cited by 16

Anaerobic peroxisomes in Entamoeba histolytica metabolize myo-inositol

Verner, Z., Žárský, V., Le, T. C., Narayanasamy, R. K., Rada, P., Rozbeský, D., Makki, A., Belišová, D., Hrdý, I., Vancová, M., et al. (2021) · PLoS Pathogens · doi:10.1371/journal.ppat.1010041 · Cited by 16

Molecular evolution and functional characterization of chitinase gene family in Populus trichocarpa

Zhang, Y., Ren, L.-L., Lin, X.-Y., Han, X., Wang, W., & Yang, Z. (2022) · Gene · doi:10.1016/j.gene.2022.146329 · Cited by 16

Chimeric origins and dynamic evolution of central carbon metabolism in eukaryotes

Santana‐Molina, C., Williams, T. A., Snel, B., & Spang, A. (2025) · Nature Ecology & Evolution · doi:10.1038/s41559-025-02648-0 · Cited by 18

Genome analyses provide insights into Engelhardia’s adaptation to East Asia summer monsoon

Li, M., Wu, J.-J., Su, R.-P., Fang, O.-Y., Cai, X., Huang, P., Gao, X.-Y., Fu, X.-X., Ma, X.-H., He, L.-Y., et al. (2025) · Plant Diversity · doi:10.1016/j.pld.2025.07.003 · Cited by 14

High-resolution in situ structures of hantavirus glycoprotein tetramers

Guo, L., McFadden, E., Slough, M. M., Stone, E. T., Berrigan, J. L., Mittler, E., Hatzakis, K., Hinkley, T. C., Kain, H. S., Ke, Z., et al. (2026) · Cell · doi:10.1016/j.cell.2026.01.030 · Cited by 19

Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer

Li, K.-L., Nakashima, K., Inoue, J. G., & Satoh, N. (2020) · Genes · doi:10.3390/genes11080937 · Cited by 15

High-Throughput Sequencing-Based Identification of miRNAs and Their Target mRNAs in Wheat Variety Qing Mai 6 Under Salt Stress Condition

He, X., Han, Z. H., Yin, H., Chen, F., Dong, Y., Zhang, L., Lu, X., Zeng, J., Ma, W., & Mu, P. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.724527 · Cited by 15

Genome Identification and Expression Profiles in Response to Nitrogen Treatment Analysis of the Class I CCoAOMT Gene Family in Populus

Zhao, H., Qu, C., Zuo, Z., Cao, L., Zhang, S., Xu, X., Xu, Z., & Liu, G. (2021) · Biochemical Genetics · doi:10.1007/s10528-021-10112-4 · Cited by 15

Genome-wide identification and gene-editing of pigment transporter genes in the swallowtail butterfly Papilio xuthus

Liu, G., Liu, W., Zhao, R., He, J., Dong, Z., Chen, L., Wan, W., Chang, Z., Wang, W., & Li, X. (2021) · BMC Genomics · doi:10.1186/s12864-021-07400-z · Cited by 15

Genome-wide identification, bioinformatics characterization and functional analysis of pectin methylesterase inhibitors related to low temperature-induced juice sac granulation in navel orange (Citrus sinensis Osbeck)

Li, Z., Wang, C., Long, D., Jiang, Y., He, L., Wang, Z., Ma, X., Bai, F., Liu, J., Wu, L., et al. (2022) · Scientia Horticulturae · doi:10.1016/j.scienta.2022.110983 · Cited by 15

NtDREB-1BL1 Enhances Carotenoid Biosynthesis by Regulating Phytoene Synthase in Nicotiana tabacum

Dong, C., Wang, Q., Wang, Y., Qin, L., Shi, Y., Wang, X., & Wang, R. (2022) · Genes · doi:10.3390/genes13071134 · Cited by 16

Genome-Wide Identification and Salt Stress Response Analysis of the bZIP Transcription Factor Family in Sugar Beet

Gong, Y., Liu, X., Chen, S., Li, H., & Duanmu, H. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms231911573 · Cited by 15

Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses

Zheng, W., Xu, X., Zechen, E., Liu, Y., & Chen, S. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.1005401 · Cited by 15

Genome-wide quantification of contributions to sexual fitness identifies genes required for spore viability and health in fission yeast

Billmyre, R. B., Eickbush, M. T., Craig, C. J., Lange, J. J., Wood, C. J., Helston, R. M., & Zanders, S. E. (2022) · PLoS Genetics · doi:10.1371/journal.pgen.1010462 · Cited by 15

Diversity and Potential Multifunctionality of Archaeal CetZ Tubulin-like Cytoskeletal Proteins

Brown, H. J., & Duggin, I. G. (2023) · Biomolecules · doi:10.3390/biom13010134 · Cited by 15

Passer, a highly active transposon from a fish genome, as a potential new robust genetic manipulation tool

Wang, S., Gao, B., Miskey, C., Guan, Z., Sang, Y., Chen, C., Wang, X., Ivics, Z., & Song, C. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad005 · Cited by 15

Human-associated bacteria adopt an unusual route for synthesizing 3-acetylated tetramates for environmental adaptation

Zhang, Y., Liao, G., Wang, M., Zhang, Z., Liu, L., Song, Y., Wang, D., Hao, T., Feng, J., Xia, B., et al. (2023) · Microbiome · doi:10.1186/s40168-023-01548-4 · Cited by 15

Pictolysin-III, a Hemorrhagic Type-III Metalloproteinase Isolated from Bothrops pictus (Serpentes: Viperidae) Venom, Reduces Mitochondrial Respiration and Induces Cytokine Secretion in Epithelial and Stromal Cell Lines

Vivas-Ruiz, D. E., Rosas, P., Proleón, Á., Torrejón, D., Lazo, F., Tenorio-Ricca, A. B., Guajardo, F., Almarza, C., Andrades, V., Astorga, J., et al. (2023) · Pharmaceutics · doi:10.3390/pharmaceutics15051533 · Cited by 15

Bacterial TANGO2 homologs are heme-trafficking proteins that facilitate biosynthesis of cytochromes c

Han, S., Guo, K., Wang, W., Tao, Y. J., & Gao, H. (2023) · mBio · doi:10.1128/mbio.01320-23 · Cited by 16

Predicting Blomia tropicalis allergens using a multiomics approach

Hubert, J., Vrtala, S., Sopko, B., Dowd, S. E., He, Q., Klimov, P. B., Harant, K., Talacko, P., & Erban, T. (2023) · Clinical and Translational Allergy · doi:10.1002/clt2.12302 · Cited by 16

Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K

Parker, M. T., Fica, S. M., Barton, G. J., & Simpson, G. G. (2023) · eLife · doi:10.7554/elife.91997 · Cited by 15

The Acinetobacter baumannii K70 and K9 capsular polysaccharides consist of related K-units linked by the same Wzy polymerase and cleaved by the same phage depolymerases

Kasimova, A. A., Sharar, N. S., Ambrose, S. J., Knirel, Y. A., Shneider, M. M., Timoshina, O. Y., Popova, A. V., Perepelov, A. V., Dmitrenok, A. S., Hsu, L. Y., et al. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.03025-23 · Cited by 15

Engineering of glycoside hydrolase family 7 cellobiohydrolases directed by natural diversity screening

Brunecky, R., Knott, B. C., Subramanian, V., Linger, J. G., Beckham, G. T., Amore, A., Taylor, L. E., Wall, T. V., Lunin, V. V., Zheng, F., et al. (2024) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2024.105749 · Cited by 15

MFTrans: A multi-feature transformer network for protein secondary structure prediction

Chen, Y., Chen, G., & Chen, C. Y. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.131311 · Cited by 15

Genome-wide identification of Aux/IAA gene family in white clover (Trifolium repens L.) and functional verification of TrIAA18 under different abiotic stress

Qi, T., Yang, W., Hassan, M. J., Liu, J., Yang, Y., Zhou, Q., Li, H., & Peng, Y. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-05034-3 · Cited by 15

Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFold Models

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Genome-Wide Identification of NAC Gene Family Members of Tree Peony (Paeonia suffruticosa Andrews) and Their Expression under Heat and Waterlogging Stress

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Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1E

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First Comparative Analysis of Clostridium septicum Genomes Provides Insights Into the Taxonomy, Species Genetic Diversity, and Virulence Related to Gas Gangrene

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Paenibacillus albicereus sp. nov. and Niallia alba sp. nov., isolated from digestive syrup

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Identification of putative producers of rhamnolipids/glycolipids and their transporters using genome mining

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GURFAP: A Platform for Gene Function Analysis in Glycyrrhiza Uralensis

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Leveraging lncRNA-miRNA-mRNA network to reveal anti-Spiroplasma eriocheiris infection mechanisms in Macrobrachium nipponense

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Host gut resistome in Gulf War chronic multisymptom illness correlates with persistent inflammation

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HMMER web server: 2026 update

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