Median-joining networks for inferring intraspecific phylogenies

Shortest Connection Networks And Some Generalizations

Prim, R. C. (1957) · Bell System Technical Journal · doi:10.1002/j.1538-7305.1957.tb01515.x · Cited by 4,659

Methods for Computing Wagner Trees

Farris, J. S. (1970) · Systematic Biology · doi:10.1093/sysbio/19.1.83 · Cited by 1,243

Mitochondrial portraits of human populations using median networks.

Bandelt, H. J., Forster, P., Sykes, B. C., & Richards, M. B. (1995) · Genetics · doi:10.1093/genetics/141.2.743 · Cited by 1,071

Methods for Computing Wagner Trees

Farris, J. S. (1970) · Systematic Zoology · doi:10.2307/2412028 · Cited by 937

Classification of European mtDNAs From an Analysis of Three European Populations

Torroni, A., Huoponen, K., Francalacci, P., Petrozzi, M., Morelli, L., Scozzari, R., Obinu, D. A., Savontaus, M., & Wallace, D. C. (1996) · Genetics · doi:10.1093/genetics/144.4.1835 · Cited by 838

Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony.

Excoffier, L., & Smouse, P. E. (1994) · Genetics · doi:10.1093/genetics/136.1.343 · Cited by 460

mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans.

Torroni, A., Sukernik, R. I., Schurr, T. G., Starikorskaya, Y. B., Cabell, M. F., Crawford, M. H., Comuzzie, A. G., & Wallace, D. C. (1993) · PubMed · Cited by 389

Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups.

Chen, Y. S., Torroni, A., Excoffier, L., Santachiara‐Benerecetti, A. S., & Wallace, D. C. (1995) · PubMed Central · Cited by 324

Nonneutral Mitochondrial DNA Variation in Humans and Chimpanzees

Nachman, M. W., Brown, W. M., Stoneking, M., & Aquadro, C. F. (1996) · Genetics · doi:10.1093/genetics/142.3.953 · Cited by 211

Phylogenetic Inference

Pardi, F. (2024) · doi:10.1002/9781394284252.ch6 · Cited by 121

More Cercospora Species Infect Soybeans across the Americas than Meets the Eye

Soares, A. P. G., Guillin, E. A., Borges, L. L., da Silva, A. C. T., Almeida, A. M. R., Grijalba, P. E., Gottlieb, A. M., Bluhm, B. H., & de Oliveira, L. O. (2015) · PLoS ONE · doi:10.1371/journal.pone.0133495 · Cited by 79

Bayesian inference of a historical bottleneck in a heavily exploited marine mammal

Hoffman, J. I., GRANT, S. M., Forcada, J., & Phillips, C. D. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05248.x · Cited by 79

The Oriental Fruit Fly, Bactrocera dorsalis, in China: Origin and Gradual Inland Range Expansion Associated with Population Growth

Wan, X., Nardi, F., Zhang, B., & Liu, Y. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025238 · Cited by 79

Mitochondrial phylogeography and genetic diversity of Tibetan gazelle (Procapra picticaudata): Implications for conservation

Zhang, F., & Jiang, Z. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2006.05.024 · Cited by 79

Phylogeny and phylogeography of medicinal leeches (genus Hirudo): Fast dispersal and shallow genetic structure

Trontelj, P., & Utevsky, S. (2012) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2012.01.022 · Cited by 79

Multiple SNP Markers Reveal Fine-Scale Population and Deep Phylogeographic Structure in European Anchovy (Engraulis encrasicolus L.)

Zarraonaindia, I., Iriondo, M., Albaina, A., Pardo, M. Á., Manzano, C., Grant, W. S., Irigoien, X., & Estonba, A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042201 · Cited by 77

Molecular tracing of the transmission routes of bois noir in Mediterranean vineyards of Montenegro and experimental evidence for the epidemiological role of Vitex agnus‐castus (Lamiaceae) and associated Hyalesthes obsoletus (Cixiidae)

Kosovac, A., Radonjić, S., Hrnčić, S., Krstić, O., Toševski, I., & Jović, J. (2015) · Plant Pathology · doi:10.1111/ppa.12409 · Cited by 79

Phylogeography of Two Closely Related Indo-Pacific Butterflyfishes Reveals Divergent Evolutionary Histories and Discordant Results from mtDNA and Microsatellites

DiBattista, J. D., Rocha, L. A., Craig, M. T., Feldheim, K. A., & Bowen, B. W. (2012) · Journal of Heredity · doi:10.1093/jhered/ess056 · Cited by 79

Molecular biogeography of red deer Cervus elaphus from eastern Europe: insights from mitochondrial DNA sequences

Niedziałkowska, M., Jędrzejewska, B., Honnen, A., Otto, T., Sidorovich, V. E., Perzanowski, K., Skog, A., Hartl, G. B., Borowik, T., Bunevich, A. N., et al. (2010) · ACTA THERIOLOGICA · doi:10.1007/s13364-010-0002-0 · Cited by 79

Evolutionary history of the Paradoxurus palm civets – a new model for Asian biogeography

Patou, M., Wilting, A., Gaubert, P., Esselstyn, J. A., Cruaud, C., Jennings, A. P., Fickel, J., & Veron, G. (2010) · Journal of Biogeography · doi:10.1111/j.1365-2699.2010.02364.x · Cited by 81

Mitochondrial DNA haplogroup H structure in North Africa

Ennafaa, H., Cabrera, V. M., Abu‐Amero, K. K., González, A. M., Amor, M. B., Bouhaha, R., Dzimiri, N., Elgaaïed, A. B., & Larruga, J. M. (2009) · BMC Genetics · doi:10.1186/1471-2156-10-8 · Cited by 79

The marine ‘great wall’ of China: local‐ and broad‐scale ecological impacts of coastal infrastructure on intertidal macrobenthic communities

Dong, Y., Huang, X., Wei, W., Li, Y., & Wang, J. (2016) · Diversity and Distributions · doi:10.1111/ddi.12443 · Cited by 79

Head Lice of Pygmies Reveal the Presence of Relapsing Fever Borreliae in the Republic of Congo

Amanzougaghene, N., Akiana, J., Ndombe, G. M., Davoust, B., Nsana, N. S., Parra, H., Fenollar, F., Raoult, D., & Mediannikov, O. (2016) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0005142 · Cited by 79

Phylogeography of olive ridley turtles (Lepidochelys olivacea) on the east coast of India: implications for conservation theory

Shanker, K., Ramadevi, J., Choudhury, B. C., Singh, L., & Aggarwal, R. K. (2004) · Molecular Ecology · doi:10.1111/j.1365-294x.2004.02195.x · Cited by 79

Phylogeography of a nematode (Heligmosomoides polygyrus) in the western Palearctic region: persistence of northern cryptic populations during ice ages?

Nieberding, C. M., Libois, R., Douady, C. J., Morand, S., & MICHAUX, J. R. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02440.x · Cited by 79

Phylogeography of the human mitochondrial haplogroup L3e: a snapshot of African prehistory and Atlantic slave trade.

Bandelt, H.-J., Alves‐Silva, J., Guimarães, P. E. M., Santos, M., Brehm, A., Pereira, L., Coppa, A., Larruga, J. M., Rengo, C., Scozzari, R., et al. (2001) · PubMed · doi:10.1017/s0003480001008892 · Cited by 79

Elucidating the spread of the emerging canid nematode Angiostrongylus vasorum between Palaearctic and Nearctic ecozones

Jefferies, R., Shaw, S. E., Willesen, J., Viney, M. E., & Morgan, E. R. (2010) · Infection, Genetics and Evolution · doi:10.1016/j.meegid.2010.01.013 · Cited by 78

Global mitochondrial DNA phylogeography and population structure of the silky shark, Carcharhinus falciformis

Clarke, C. R., Karl, S. A., Horn, R. L., Bernard, A. M., Lea, J. S. E., Hazin, F. H. V., Prodöhl, P. A., & Shivji, M. S. (2015) · Marine Biology · doi:10.1007/s00227-015-2636-6 · Cited by 82

Isolation, contact and social behavior shaped genetic diversity in West Timor

Tumonggor, M. K., Karafet, T. M., Downey, S. S., Lansing, J. S., Norquest, P. K., Sudoyo, H., Hammer, M. F., & Cox, M. P. (2014) · Journal of Human Genetics · doi:10.1038/jhg.2014.62 · Cited by 80

Revealing the maternal demographic history of Panthera leo using ancient DNA and a spatially explicit genealogical analysis

Barnett, R., Yamaguchi, N., Shapiro, B., Ho, S. Y. W., Barnes, I., Sabin, R., Werdelin, L., Cuisin, J., & Larson, G. (2014) · BMC Evolutionary Biology · doi:10.1186/1471-2148-14-70 · Cited by 79

The signature of long-standing balancing selection at the human defensin β-1 promoter

Cagliani, R., Fumagalli, M., Riva, S., Pozzoli, U., Comi, G. P., Menozzi, G., Bresolin, N., & Sironi, M. (2008) · Genome biology · doi:10.1186/gb-2008-9-9-r143 · Cited by 81

Genetic Diversity and Phylogeny of Aedes aegypti, the Main Arbovirus Vector in the Pacific

Calvez, E., Guillaumot, L., Millet, L., Marie, J., Bossin, H., Rama, V., Faamoe, A., Kilama, S., Teurlai, M., Mathieu-Daudé, F., et al. (2016) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0004374 · Cited by 78

Phylogeny and species delimitation of Flammulina: taxonomic status of winter mushroom in East Asia and a new European species identified using an integrated approach

Wang, P. M., Liu, X. B., Dai, Y., Horak, E., Steffen, K. T., & Yang, Z. L. (2018) · Mycological Progress · doi:10.1007/s11557-018-1409-2 · Cited by 78

Nursing homes and the elderly regarding the COVID-19 pandemic: situation report from Hungary

Kemenesi, G., Kornya, L., Tóth, G. E., Kurucz, K., Zeghbib, S., Somogyi, B. A., Zöldi, V., Urban, P. P., Herczeg, R., & Jakab, F. (2020) · GeroScience · doi:10.1007/s11357-020-00195-z · Cited by 78

Whole-genome sequencing of Mycobacterium tuberculosis directly from clinical samples for high-resolution genomic epidemiology and drug resistance surveillance: an observational study

Goig, G. A., Cancino‐Muñoz, I., Torres‐Puente, M., Villamayor, L. M., Navarro, D., Borrás, R., & Comas, I. (2020) · The Lancet Microbe · doi:10.1016/s2666-5247(20)30060-4 · Cited by 78

Temporal and spatial analyses disclose consequences of habitat fragmentation on the genetic diversity in capercaillie (Tetrao urogallus)

Segelbacher, G., Manel, S., & Tomiuk, J. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2008.03767.x · Cited by 78

Multiple autopolyploidizations and range expansion ofAllium przewalskianumRegel. (Alliaceae) in the Qinghai-Tibetan Plateau

WU, L.-L., CUI, X.-K., MILNE, R. I., Sun, Y., & Liu, J. (2010) · Molecular Ecology · doi:10.1111/j.1365-294x.2010.04613.x · Cited by 78

Phylogeny and evolutionary history of Leymus(Triticeae; Poaceae) based on a single-copy nuclear gene encoding plastid acetyl-CoA carboxylase

Fan, X., Sha, L., Yang, R., Zhang, H., Kang, H., Ding, C.-B., Zhang, L., Zheng, Y., & Zhou, Y. (2009) · BMC Evolutionary Biology · doi:10.1186/1471-2148-9-247 · Cited by 78

Concomitant Replacement of Language and mtDNA in South Caspian Populations of Iran

Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2006) · Current Biology · doi:10.1016/j.cub.2006.02.021 · Cited by 81

Two Distinct Triatoma dimidiata (Latreille, 1811) Taxa Are Found in Sympatry in Guatemala and Mexico

Dorn, P. L., Calderón, C. I., Melgar, S., Moguel, B., Solórzano, E., Dumonteil, E., Rodas, A. G., de la Rua, N., Garnica, R. D. Y., & Monroy, C. (2009) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0000393 · Cited by 78

Genetic characterization of Indian peste des petits ruminants virus (PPRV) by sequencing and phylogenetic analysis of fusion protein and nucleoprotein gene segments

Kerur, N., Jhala, M. K., & Joshi, C. G. (2007) · Research in Veterinary Science · doi:10.1016/j.rvsc.2007.07.007 · Cited by 78

Cryptic lineages and Pleistocene population expansion in a Brazilian Cerrado frog

Prado, C. P. A., Haddad, C. F. B., & Zamudio, K. R. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05409.x · Cited by 78

Genetic consequences of intensive management in game birds

Barbanera, F., Pergams, O. R. W., Guerrini, M., Forcina, G., Panayides, P., & Dini, F. (2010) · Biological Conservation · doi:10.1016/j.biocon.2010.02.035 · Cited by 78

Recent Spread of a Y-Chromosomal Lineage in Northern China and Mongolia

Xue, Y., Zerjal, T., Bao, W., Suling, Z., Lim, S., Shu, Q., Xu, J., Du, R., Fu, S., Li, P., et al. (2005) · The American Journal of Human Genetics · doi:10.1086/498583 · Cited by 80

Mitochondrial phylogeography of the Eurasian beaverCastor fiberL.

Durka, W., Babik, W., Ducroz, J.-F., Heidecke, D., Rosell, F., Samjaa, R., Saveljev, A. P., Stubbe, A., Ulevičius, A., & Stubbe, M. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02704.x · Cited by 78

Genetic Diversity and Phylogenetic Evolution of Tibetan Sheep Based on mtDNA D-Loop Sequences

Liu, J., Ding, X., Zeng, Y., Yue, Y., Guo, X., Guo, T., Chu, M., Wang, F., Han, J., Feng, R., et al. (2016) · PLoS ONE · doi:10.1371/journal.pone.0159308 · Cited by 78

Genomic Analysis Reveals Hypoxia Adaptation in the Tibetan Mastiff by Introgression of the Grey Wolf from the Tibetan Plateau

Miao, B., Wang, Z., & Li, Y. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw274 · Cited by 83

Ancient DNA reveals differences in behaviour and sociality between brown bears and extinct cave bears

Fortes, G. G., Grandal‐d'Anglade, A., Kolbe, B., Fernandes, D., Meleg, I. N., García‐Vázquez, A., Pinto‐Llona, A. C., Constantin, S., de Torres, T. J., Ortiz, J. E., et al. (2016) · Molecular Ecology · doi:10.1111/mec.13800 · Cited by 76

The Carpathians as a Major Diversity Hotspot in Europe

Bálint, M., Ujvárosi, L., Theißinger, K., Lehrian, S., Mészáros, N., & Pauls, S. U. (2011) · Springer eBooks · doi:10.1007/978-3-642-20992-5_11 · Cited by 78

Comparative phylogeography of four Apodemus species (Mammalia: Rodentia) in the Asian Far East: evidence of Quaternary climatic changes in their genetic structure

Sakka, H., Quéré, J. P., Картавцева, И. В., Pavlenko, M. V., Chelomina, G. N., Матвеевич, А. Д., Богданов, А. С., & MICHAUX, J. R. (2010) · Biological Journal of the Linnean Society · doi:10.1111/j.1095-8312.2010.01477.x · Cited by 77

Differentiated demographic histories and local adaptations between Sherpas and Tibetans

Zhang, C., Lü, Y., Feng, Q., Wang, X., Lou, H., Liu, J., Ning, Z., Yuan, K., Wang, Y., Zhou, Y., et al. (2017) · Genome biology · doi:10.1186/s13059-017-1242-y · Cited by 80

Two markers and one history: phylogeography of the edible common sea urchin Paracentrotus lividus in the Lusitanian region

Calderón, I., Giribet, G., & Turón, X. (2008) · Marine Biology · doi:10.1007/s00227-008-0908-0 · Cited by 75

Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle

Seabury, C. M., Seabury, P. M., Decker, J. E., Schnabel, R. D., Taylor, J. F., & Womack, J. E. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0913006107 · Cited by 80

Global Population Structure of the Genes Encoding the Malaria Vaccine Candidate, Plasmodium vivax Apical Membrane Antigen 1 (PvAMA1)

Arnott, A., Müeller, I., Ramsland, P. A., Siba, P. M., Reeder, J. C., & Barry, A. E. (2013) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0002506 · Cited by 77

Asymmetric Male and Female Genetic Histories among Native Americans from Eastern North America

Bolnick, D. A. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl088 · Cited by 77

Conflicting patterns of nucleotide diversity between mtDNA and nDNA in the Moorish gecko, Tarentola mauritanica

Rato, C., Carranza, S., Perera, A., Carretero, M. Á., & Harris, D. J. (2010) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2010.04.033 · Cited by 77

Phylogeography of the mountain chickadee (Poecile gambeli): diversification, introgression, and expansion in response to Quaternary climate change

Spellman, G. M., Riddle, B. R., & Klicka, J. (2007) · Molecular Ecology · doi:10.1111/j.1365-294x.2007.03199.x · Cited by 77

DNA Variation in a Conifer, Cryptomeria japonica (Cupressaceae sensu lato)

Kado, T., Yoshimaru, H., Tsumura, Y., & Tachida, H. (2003) · Genetics · doi:10.1093/genetics/164.4.1547 · Cited by 77

Mitochondrial DNA analysis of Iranian brown bears (Ursus arctos) reveals new phylogeographic lineage

Ashrafzadeh, M. R., Kaboli, M., & Naghavi, M. R. (2015) · Mammalian Biology · doi:10.1016/j.mambio.2015.09.001 · Cited by 75

Multiple Glacial Refugia of the Low-Dispersal Ground Beetle Carabus irregularis: Molecular Data Support Predictions of Species Distribution Models

Homburg, K., Drees, C., Goßner, M. M., Rákosy, L., Vrezec, A., & Aßmann, T. (2013) · PLoS ONE · doi:10.1371/journal.pone.0061185 · Cited by 76

DNA Genotyping Suggests that Recent Brucellosis Outbreaks in the Greater Yellowstone Area Originated from Elk

Beja‐Pereira, A., Bricker, B. J., Chen, S., Almendra, C., White, P. J. C., & Luikart, G. (2009) · Journal of Wildlife Diseases · doi:10.7589/0090-3558-45.4.1174 · Cited by 76

Molecular phylogenetics and phylogeography of all the Saimiri taxa (Cebidae, Primates) inferred from mt COI and COII gene sequences

Ruiz‐García, M., Luengas-Villamil, K., Leguizamón, N., de Thoisy, B., & Gálvez, H. (2014) · Primates · doi:10.1007/s10329-014-0452-0 · Cited by 76

Forensic characteristics and genetic analysis of both 27 Y-STRs and 143 Y-SNPs in Eastern Han Chinese population

Lang, M., Liu, H., Song, F., Qiao, X., Ye, Y., Ren, H., Li, J., Huang, J., Xie, M., Chen, S., et al. (2019) · Forensic Science International Genetics · doi:10.1016/j.fsigen.2019.07.011 · Cited by 75

Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

Chen, H., Lu, Y., Lu, D., & Xu, S. (2021) · BMC Bioinformatics · doi:10.1186/s12859-021-04057-z · Cited by 76

Worldwide mitochondrial DNA diversity and phylogeography of pilot whales (Globicephala spp.)

Oremus, M., Gales, R., Dalebout, M. L., Funahashi, N., Endo, T., KAGE, T., Steel, D. J., & Baker, S. (2009) · Biological Journal of the Linnean Society · doi:10.1111/j.1095-8312.2009.01325.x · Cited by 76

Did vicariance and adaptation drive cryptic speciation and evolution of brooding in Ophioderma longicauda (Echinodermata: Ophiuroidea), a common Atlanto-Mediterranean ophiuroid?

Boissin, É., Stöhr, S., & Chenuil, A. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05309.x · Cited by 76

Mitochondrial diversity and the origin of Iberian sheep

Pedrosa, S., Arranz, J.-J., Brito, N. V., Molina, A., Primitivo, F. S., & Bayón, Y. (2007) · Genetics Selection Evolution · doi:10.1186/1297-9686-39-1-91 · Cited by 76

Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

Cortés, A. J., Chavarro, C. M., Madriñán, S., This, D., & Blair, M. W. (2012) · BMC Genetics · doi:10.1186/1471-2156-13-58 · Cited by 76

South American Plasmodium falciparum after the Malaria Eradication Era: Clonal Population Expansion and Survival of the Fittest Hybrids

Griffing, S. M., Mixson-Hayden, T. R., Sridaran, S., Alam, M. T., McCollum, A. M., Cabezas, C., Marquiño, W., Barnwell, J. W., de Oliveira, A. M., Lucas, C. M., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0023486 · Cited by 76

Cryptic biodiversity and phylogeographical patterns in a snapping shrimp species complex

Mathews, L. M. (2006) · Molecular Ecology · doi:10.1111/j.1365-294x.2006.03077.x · Cited by 76

Evolutionary history of almond tree domestication in the M editerranean basin

Delplancke, M., Álvarez, N., Benoit, L., Espíndola, A., Joly, H. I., Neuenschwander, S., & Arrigo, N. (2012) · Molecular Ecology · doi:10.1111/mec.12129 · Cited by 76

Iberian Origins of New World Horse Breeds

Luı́s, C., Bastos‐Silveira, C., Cothran, E. G., & Oom, M. D. M. (2006) · Journal of Heredity · doi:10.1093/jhered/esj020 · Cited by 76

Nuclear and Mitochondrial Patterns of Population Structure in North Pacific False Killer Whales (Pseudorca crassidens)

Martien, K. K., Chivers, S. J., Baird, R. W., Archer, F. I., Gorgone, A. M., Hancock‐Hanser, B. L., Mattila, D. K., McSweeney, D. J., Oleson, E. M., Palmer, C., et al. (2014) · Journal of Heredity · doi:10.1093/jhered/esu029 · Cited by 79

Twisted sister species of pygmy angelfishes: discordance between taxonomy, coloration, and phylogenetics

DiBattista, J. D., Waldrop, E., Bowen, B. W., Schultz, J. K., Gaither, M. R., Pyle, R. L., & Rocha, L. A. (2012) · Coral Reefs · doi:10.1007/s00338-012-0907-y · Cited by 75

Phylogeography, genetic structure, and diversity in the dhole (Cuon alpinus)

Iyengar, A., BABU, V. N., Hedges, S., VENKATARAMAN, A. B., Maclean, N., & Morin, P. A. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02582.x · Cited by 76

Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European Phoxinus (Cyprinidae)

Palandačić, A., Naseka, A. M., Ramler, D., & Ahnelt, H. (2017) · BMC Evolutionary Biology · doi:10.1186/s12862-017-1032-x · Cited by 76

Mitochondrial DNA variability in the Titicaca basin: Matches and mismatches with linguistics and ethnohistory

Barbieri, C., Heggarty, P., Castrì, L., Luiselli, D., & Pettener, D. (2010) · American Journal of Human Biology · doi:10.1002/ajhb.21107 · Cited by 75

Mitochondrial DNA diversity of the Amerindian populations living in the Andean Piedmont of Bolivia: Chimane, Moseten, Aymara and Quechua

Corella, A., Bert, F., Pérez‐Pérez, A., Gené, M., & Turbón, D. (2007) · Annals of Human Biology · doi:10.1080/03014460601075819 · Cited by 75

Whole Y-chromosome sequences reveal an extremely recent origin of the most common North African paternal lineage E-M183 (M81)

Solé‐Morata, N., García-Fernández, C., Urasin, V., Bekada, A., Fadhlaoui‐Zid, K., Zalloua, P., Comas, D., & Calafell, F. (2017) · Scientific Reports · doi:10.1038/s41598-017-16271-y · Cited by 75

Genomic Analysis Revealed a Convergent Evolution of LINE-1 in Coat Color: A Case Study in Water Buffaloes (Bubalus bubalis)

Liang, D., Zhao, P., Si, J., Fang, L., Pairo‐Castineira, E., Hu, X., Xu, Q., Hou, Y., Gong, Y., Liang, Z., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa279 · Cited by 74

Cryptosporidium parvum IId family: clonal population and dispersal from Western Asia to other geographical regions

Wang, R., Zhang, L., Axén, C., Björkman, C., Jian, F., Amer, S., Liu, A., Feng, Y., Li, G., Lv, C., et al. (2014) · Scientific Reports · doi:10.1038/srep04208 · Cited by 75

Influence of forest fragmentation on an endangered large-bodied lemur in northwestern Madagascar

Craul, M., Chikhi, L., Sousa, V. C., Olivieri, G. L., RABESANDRATANA, A. Z., Zimmermann, E., & Radespiel, U. (2009) · Biological Conservation · doi:10.1016/j.biocon.2009.05.026 · Cited by 75

A Genome-wide Survey of the Prevalence and Evolutionary Forces Acting on Human Nonsense SNPs

Yngvadóttir, B., Xue, Y., Searle, S. M. J., Hunt, S. E., Delgado, M., Morrison, J., Whittaker, P., Deloukas, P., & Tyler‐Smith, C. (2009) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2009.01.008 · Cited by 75

A mitogenic view on the evolutionary history of the Holarctic freshwater gadoid, burbot (Lota lota)

Houdt, J. K. J. V., CLEYN, L. D., Perretti, A. R., & VOLCKAERT, F. A. M. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02590.x · Cited by 75

Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in E urasia

Paupério, J., Herman, J. S., Melo‐Ferreira, J., Jaarola, M., Alves, P. C., & Searle, J. B. (2012) · Molecular Ecology · doi:10.1111/mec.12024 · Cited by 75

Y Chromosome Haplotype Analysis in Portuguese Cattle Breeds Using SNPs and STRs

Ginja, C., Gama, L. T., & Penedo, M. C. T. (2008) · Journal of Heredity · doi:10.1093/jhered/esn080 · Cited by 75

Genetic Diversity and Population History of the Red Panda (Ailurus fulgens) as Inferred from Mitochondrial DNA Sequence Variations

Su, B., Fu, Y., Wang, Y., Li, J., & Chakraborty, R. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003878 · Cited by 75

Absence of geographical structure of chloroplast DNA variation in sallow, Salix caprea L.

Palmé, A. E., Semerikov, V. L., & Lascoux, M. (2003) · Heredity · doi:10.1038/sj.hdy.6800307 · Cited by 75

Something for everyone

Kurland, C. G. (2000) · EMBO Reports · doi:10.1093/embo-reports/kvd042 · Cited by 75

Reconstructing phylogenetic networks using maximum parsimony

Nakhleh, L. K., Jin, G., Zhao, F., & Mellor‐Crummey, J. (2005) · IEEE Computational Systems Bioinformatics Conference (CSB) · doi:10.1109/csb.2005.47 · Cited by 75

Geographical, Linguistic, and Cultural Influences on Genetic Diversity: Y-Chromosomal Distribution in Northern European Populations

Zerjal, T., Beckman, L. E., Beckman, G., Mikelsaar, A., Krūmiņa, A., Kučinskas, V., Hurles, M. E., & Tyler‐Smith, C. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003879 · Cited by 75

Evolutionary geographic relationships among orthocladine chironomid midges from maritime Antarctic and sub-Antarctic islands

Allegrucci, G., Carchini, G., Convey, P., & Sbordoni, V. (2012) · Biological Journal of the Linnean Society · doi:10.1111/j.1095-8312.2012.01864.x · Cited by 74

Reconstruction of the colonization of southern Madagascar by introduced Rattus rattus

Hingston, M., Goodman, S. M., Ganzhorn, J. U., & Sommer, S. (2005) · Journal of Biogeography · doi:10.1111/j.1365-2699.2005.01311.x · Cited by 38

Integrating multiple lines of evidence to better understand the evolutionary divergence of humpback dolphins along their entire distribution range: a new dolphin species in Australian waters?

Mendez, M., Jefferson, T. A., Kolokotronis, S., Krützen, M., Parra, G. J., Collins, T., Giana, M., Baldwin, R., Berggren, P., Särnblad, A., et al. (2013) · Molecular Ecology · doi:10.1111/mec.12535 · Cited by 74

Climate change drives speciation in the southern rock agama (Agama atra) in the Cape Floristic Region, South Africa

Swart, B. L., Tolley, K. A., & Matthee, C. A. (2008) · Journal of Biogeography · doi:10.1111/j.1365-2699.2008.01988.x · Cited by 74

The global dissemination of hospital clones of Enterococcus faecium

Enterococcal Group, van Hal, S. J., Willems, R. J. L., Gouliouris, T., Ballard, S. A., Coque, T. M., Hammerum, A. M., Hegstad, K., Westh, H. T., Howden, B. P., et al. (2021) · Genome Medicine · doi:10.1186/s13073-021-00868-0 · Cited by 73

Contrasting patterns of Y-chromosome variation in South Siberian populations from Baikal and Altai-Sayan regions

Derenko, M. V., Malyarchuk, B. А., Denisova, G. A., Woźniak, M., Dambueva, I. K., Михайловна, Д. Ч., Лузина, Ф. А., Miścicka‐Śliwka, D., & ZAKHAROV, I. A. (2005) · Human Genetics · doi:10.1007/s00439-005-0076-y · Cited by 74

Phylogeographic patterns of decapod crustaceans at the Atlantic–Mediterranean transition

García‐Merchán, V. H., Robainas-Barcia, A., Abelló, P., Macpherson, E., Palero, F., García‐Rodriguez, M., de Sola, L. G., & Pascual, M. (2011) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2011.11.009 · Cited by 74

Phylogeography and cryptic variation within the Lacerta viridis complex (Lacertidae, Reptilia)

Böhme, M. U., Fritz, U., Kotenko, T., Džukić, G., Ljubisavljević, K., Tzankov, N., & Berendonk, T. U. (2006) · Zoologica Scripta · doi:10.1111/j.1463-6409.2006.00262.x · Cited by 74

Strong population genetic structure and contrasting demographic histories for the small-spotted catshark (Scyliorhinus canicula) in the Mediterranean Sea

Kousteni, V., Kasapidis, P., Kotoulas, G., & Megalofonou, P. (2014) · Heredity · doi:10.1038/hdy.2014.107 · Cited by 74

Complete Mitochondrial DNA Analysis of Eastern Eurasian Haplogroups Rarely Found in Populations of Northern Asia and Eastern Europe

Derenko, M. V., Malyarchuk, B. А., Denisova, G. A., Perkova, M. A., Rogalla, U., Grzybowski, T., Хуснутдинова, Э. К., Dambueva, I. K., & ZAKHAROV, I. A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032179 · Cited by 74

Rapid formation of distinct hybrid lineages after secondary contact of two fish species (Cottus sp.)

STEMSHORN, K. C., Reed, F. A., Nolte, A. W., & Tautz, D. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2010.04997.x · Cited by 73

Testing the role of genetic factors across multiple independent invasions of the shrub Scotch broom (Cytisus scoparius)

Kang, M., Buckley, Y. M., & Lowe, A. J. (2007) · Molecular Ecology · doi:10.1111/j.1365-294x.2007.03536.x · Cited by 74

Diversification in the northern neotropics: mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species

Zarza, E., Reynoso, V. H., & Emerson, B. C. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2008.03826.x · Cited by 74

DomeTree: a canonical toolkit for mitochondrial DNA analyses in domesticated animals

Peng, M., Fan, L., Shi, N., Ning, T., Yao, Y., Murphy, R. W., Wang, W., & Zhang, Y. (2015) · Molecular Ecology Resources · doi:10.1111/1755-0998.12386 · Cited by 79

Phylogenetic Relationships Among Fragmented Asian Black Bear (Ursus Thibetanus) Populations in Western Japan

Ishibashi, Y., & Saitoh, T. (2004) · Conservation Genetics · doi:10.1023/b:coge.0000031147.14662.82 · Cited by 73

Hybridization between native and introduced species of deer in Eastern Europe

Biedrzycka, A., Solarz, W., & Okarma, H. (2012) · Journal of Mammalogy · doi:10.1644/11-mamm-a-022.1 · Cited by 73

Genetic Structure of the Asiatic Black Bear in Japan Using Mitochondrial DNA Analysis

Yasukochi, Y., Nishida, S., Han, S. H., Kurosaki, T., Yoneda, M., & Koike, H. (2008) · Journal of Heredity · doi:10.1093/jhered/esn097 · Cited by 73

Mitochondrial DNA diversity of present-day Aboriginal Australians and implications for human evolution in Oceania

Nagle, N., Ballantyne, K. N., van Oven, M., Tyler‐Smith, C., Xue, Y., Wilcox, S., Wilcox, L., Turkalov, R., van Oorschot, R. A. H., Pellekaan, S. V. H., et al. (2016) · Journal of Human Genetics · doi:10.1038/jhg.2016.147 · Cited by 75

Speciation Associated with Shifts in Migratory Behavior in an Avian Radiation

Gómez‐Bahamón, V., Márquez, R., Jahn, A. E., Miyaki, C. Y., Tuero, D. T., Laverde-R., O., Restrepo, S., & Cadena, C. D. (2020) · Current Biology · doi:10.1016/j.cub.2020.01.064 · Cited by 80

Median-Joining Networks

(2008) · Springer eBooks · doi:10.1007/978-1-4020-6754-9_10040

Median Networks: Speedy Construction and Greedy Reduction, One Simulation, and Two Case Studies from Human mtDNA

Bandelt, H., Macaulay, V. A., & Richards, M. B. (2000) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.2000.0792 · Cited by 214

On the Use of Median-Joining Networks: A Philosophical and Empirical Evaluation of Its Suitability in Evolutionary Biology

Kong, S. (2015) · TSpace (University of Toronto) · Cited by 1

Mitochondrial portraits of human populations using median networks.

Bandelt, H. J., Forster, P., Sykes, B. C., & Richards, M. B. (1995) · Genetics · doi:10.1093/genetics/141.2.743 · Cited by 1,071

Evaluating Intraspecific “Network” Construction Methods Using Simulated Sequence Data: Do Existing Algorithms Outperform the Global Maximum Parsimony Approach?

Cassens, I., Mardulyn, P., & Milinkovitch, M. C. (2005) · Systematic Biology · doi:10.1080/10635150590945377 · Cited by 147