Cited by 11,742Genomics and Phylogenetic StudiesGenetic diversity and population structureForensic and Genetic Research

The DOI matches its Crossref record; 14 of the 14 references it cites were found in a registry or an index.

Median-joining networks for inferring intraspecific phylogenies

Open access

Bandelt, H. J., Forster, P., Rohl, A.·1999·Molecular Biology and Evolution

DOI 10.1093/oxfordjournals.molbev.a026036

Open this paper in CoChat — free account Open PDF

Abstract

Reconstructing phylogenies from intraspecific data (such as human mitochondrial DNA variation) is often a challenging task because of large sample sizes and small genetic distances between individuals. The resulting multitude of plausible trees is best expressed by a network which displays alternative potential evolutionary paths in the form of cycles. We present a method ("median joining" [MJ]) for constructing networks from recombination-free population data that combines features of Kruskal's algorithm for finding minimum spanning trees by favoring short connections, and Farris's maximum-parsimony (MP) heuristic algorithm, which sequentially adds new vertices called "median vectors", except that our MJ method does not resolve ties. The MJ method is hence closely related to the earlier approach of Foulds, Hendy, and Penny for estimating MP trees but can be adjusted to the level of homoplasy by setting a parameter epsilon. Unlike our earlier reduced median (RM) network method, MJ is applicable to multistate characters (e.g., amino acid sequences). An additional feature is the speed of the implemented algorithm: a sample of 800 worldwide mtDNA hypervariable segment I sequences requires less than 3 h on a Pentium 120 PC. The MJ method is demonstrated on a Tibetan mitochondrial DNA RFLP data set.

Integrity signals

Registry

Crossref · 10.1093/oxfordjournals.molbev.a026036

Cites

14 of 14 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Shortest Connection Networks And Some Generalizations
Prim, R. C. (1957) · Bell System Technical Journal · doi:10.1002/j.1538-7305.1957.tb01515.x · Cited by 4,659
Methods for Computing Wagner Trees
Farris, J. S. (1970) · Systematic Biology · doi:10.1093/sysbio/19.1.83 · Cited by 1,243
Mitochondrial portraits of human populations using median networks.
Bandelt, H. J., Forster, P., Sykes, B. C., & Richards, M. B. (1995) · Genetics · doi:10.1093/genetics/141.2.743 · Cited by 1,071
Self-citation
Methods for Computing Wagner Trees
Farris, J. S. (1970) · Systematic Zoology · doi:10.2307/2412028 · Cited by 937
Classification of European mtDNAs From an Analysis of Three European Populations
Torroni, A., Huoponen, K., Francalacci, P., Petrozzi, M., Morelli, L., Scozzari, R., Obinu, D. A., Savontaus, M., & Wallace, D. C. (1996) · Genetics · doi:10.1093/genetics/144.4.1835 · Cited by 838
Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony.
Excoffier, L., & Smouse, P. E. (1994) · Genetics · doi:10.1093/genetics/136.1.343 · Cited by 460
mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans.
Torroni, A., Sukernik, R. I., Schurr, T. G., Starikorskaya, Y. B., Cabell, M. F., Crawford, M. H., Comuzzie, A. G., & Wallace, D. C. (1993) · PubMed · Cited by 389
Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups.
Chen, Y. S., Torroni, A., Excoffier, L., Santachiara‐Benerecetti, A. S., & Wallace, D. C. (1995) · PubMed Central · Cited by 324
Nonneutral Mitochondrial DNA Variation in Humans and Chimpanzees
Nachman, M. W., Brown, W. M., Stoneking, M., & Aquadro, C. F. (1996) · Genetics · doi:10.1093/genetics/142.3.953 · Cited by 211
Phylogenetic Inference
Pardi, F. (2024) · doi:10.1002/9781394284252.ch6 · Cited by 121

Show all 14 references

Sorted by citations

Items 101–200 of 1,033

H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 2022
Youk, S., Torchetti, M. K., Lantz, K., Lenoch, J. B., Killian, M. L., Leyson, C. M., Bevins, S. N., Dilione, K. E., Ip, H. S., Stallknecht, D. E., et al. (2023) · Virology · doi:10.1016/j.virol.2023.109860 · Cited by 235
Habitat structure and the dispersal of male and female bottlenose dolphins ( Tursiops truncatus )
Natoli, A., Birkun, A. A., Aguilar, Á., López, A., & Hoelzel, A. R. (2005) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2005.3076 · Cited by 232
Virulence differences in Toxoplasma mediated by amplification of a family of polymorphic pseudokinases
Behnke, M. S., Khan, A., Wootton, J. C., Dubey, J. P., Tang, K., & Sibley, L. D. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1015338108 · Cited by 230
On the Diversity of Malaria Parasites in African Apes and the Origin of Plasmodium falciparum from Bonobos
Krief, S., Escalante, A. A., Pacheco, M. A., Mugisha, L., André, C., Halbwax, M., Fischer, A., Krief, J.-M., Kasenene, J. M., Crandfield, M., et al. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1000765 · Cited by 230
Unleashing floret fertility in wheat through the mutation of a homeobox gene
Sakuma, S., Golan, G., Guo, Z., Ogawa, T., Tagiri, A., Sugimoto, K., Bernhardt, N., Brassac, J., Mascher, M., Hensel, G., et al. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1815465116 · Cited by 219
Haplotype structure and association to Crohn's disease of CARD15 mutations in two ethnically divergent populations
Croucher, P. J. P., Mascheretti, S., Hampe, J., Huse, K., Frenzel, H., Stoll, M., Lu, T. T., Nikolaus, S., Yang, S., Krawczak, M., et al. (2003) · European Journal of Human Genetics · doi:10.1038/sj.ejhg.5200897 · Cited by 227
With eyes wide open: a revision of species within and closely related to the Pocillopora damicornis species complex (Scleractinia; Pocilloporidae) using morphology and genetics
Schmidt‐Roach, S., Miller, K. J., Lundgren, P. B., & Andreakis, N. (2014) · Zoological Journal of the Linnean Society · doi:10.1111/zoj.12092 · Cited by 242
Does life history predict past and current connectivity for rocky intertidal invertebrates across a marine biogeographic barrier?
Ayre, D. J., Minchinton, T. E., & Perrin, C. (2009) · Molecular Ecology · doi:10.1111/j.1365-294x.2009.04127.x · Cited by 226
Mitochondrial DNA sequences in ancient Australians: Implications for modern human origins
Adcock, G. J., Dennis, E. S., Easteal, S., Huttley, G. A., Jermiin, L. S., Peacock, W. J., & Thorne, A. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.98.2.537 · Cited by 227
A Predominantly Neolithic Origin for European Paternal Lineages
Balaresque, P. L., Bowden, G. R., Adams, S. M., Leung, H.-Y., King, T. E., Rosser, Z. H., Goodwin, J., Moisan, J., Richard, C., Millward, A., et al. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000285 · Cited by 225
Ancient genomic changes associated with domestication of the horse
Librado, P., Gamba, C., Gaunitz, C., Sarkissian, C. S. I. D., Pruvost, M., Albrechtsen, A., Fages, A., Khan, N., Schubert, M., Jagannathan, V., et al. (2017) · Science · doi:10.1126/science.aam5298 · Cited by 231
Genomic landscape of human diversity across Madagascar
Pierron, D., Heiske, M., Razafindrazaka, H., Rakoto, I., Rabetokotany, N., Ravololomanga, B., Rakotozafy, L., Rakotomalala, M., Razafiarivony, M., Rasoarifetra, B., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1704906114 · Cited by 226
Systematic review of severe fever with thrombocytopenia syndrome:virology, epidemiology, and clinical characteristics
Liu, S., Chai, C., Wang, C., Amer, S., Lv, H., He, H., Sun, J., & Lin, J. (2013) · Reviews in Medical Virology · doi:10.1002/rmv.1776 · Cited by 220
Phylogeography of theBothrops jararacacomplex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest
Grazziotin, F. G., MONZEL, M., Echeverrigaray, S., & Bonatto, S. L. (2006) · Molecular Ecology · doi:10.1111/j.1365-294x.2006.03057.x · Cited by 220
Phylogeographic Analysis of Mitochondrial DNA in Northern Asian Populations
Derenko, M. V., Malyarchuk, B. А., Grzybowski, T., Denisova, G. A., Dambueva, I. K., Perkova, M. A., Михайловна, Д. Ч., Лузина, Ф. А., Lee, H. K., Vaněček, T., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/522933 · Cited by 219
Median Networks: Speedy Construction and Greedy Reduction, One Simulation, and Two Case Studies from Human mtDNA
Bandelt, H., Macaulay, V. A., & Richards, M. B. (2000) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.2000.0792 · Cited by 214
Self-citation
Ancient hybridization and mitochondrial capture between two species of chipmunks
Good, J. M., Hird, S. M., Reid, N. M., Demboski, J. R., Steppan, S. J., MARTIN‐NIMS, T. R., & Sullivan, J. M. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2007.03640.x · Cited by 218
Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxiaPreprint
Gou, X., Wang, Z., Li, N., Qiu, F., Xu, Z., Yan, D., Yang, S., Jia, J., Kong, X., Wei, Z., et al. (2014) · Genome Research · doi:10.1101/gr.171876.113 · Cited by 216
Major East-West Division Underlies Y Chromosome Stratification across Indonesia
Karafet, T. M., Hallmark, B., Cox, M. P., Sudoyo, H., Downey, S. S., Lansing, J. S., & Hammer, M. F. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq063 · Cited by 215
Population structure and speciation in the genus Tursiops based on microsatellite and mitochondrial DNA analyses
Natoli, A., Peddemors, V. M., & Hoelzel, A. R. (2004) · Journal of Evolutionary Biology · doi:10.1046/j.1420-9101.2003.00672.x · Cited by 215
Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia
Wu, W., Zheng, X., Lu, G., Zhong, Z., Gao, H., Chen, L., Wu, C., Wang, H., Wang, Q., Zhou, K., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1213962110 · Cited by 215
The distribution of Quercus suber chloroplast haplotypes matches the palaeogeographical history of the western Mediterranean
Magri, D., Fineschi, S., Bellarosa, R., Buonamici, A., Sebastiani, F., Schirone, B., Simeone, M. C., & VENDRAMIN, G. G. (2007) · Molecular Ecology · doi:10.1111/j.1365-294x.2007.03587.x · Cited by 215
Early Holocene chicken domestication in northern China
Xiang, H., Gao, J., Yu, B., Zhou, H., Cai, D., Zhang, Y., Chen, X., Wang, X., Hofreiter, M., & Zhao, X. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1411882111 · Cited by 214
The Iberian contribution to cryptic diversity in European bats
Ibáñez, C., Mudarra, J. L. G., Rüedi, M., Stadelmann, B., & Javier Juste, B. (2006) · Acta Chiropterologica · doi:10.3161/1733-5329(2006)8[277:tictcd]2.0.co;2 · Cited by 214
Tracking SARS-CoV-2 Omicron diverse spike gene mutations identifies multiple inter-variant recombination events
Ou, J., Lan, W., Wu, X., Zhao, T., Duan, B., Yang, P., Ren, Y., Quan, L., Zhao, W., Seto, D., et al. (2022) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-022-00992-2 · Cited by 211
Barrier to gene flow between two ecologically divergent Populus species, P. alba (white poplar) and P. tremula (European aspen): the role of ecology and life history in gene introgression
Lexer, C., Fay, M. F., JOSEPH, J. A., NICA, M. ‐., & Heinze, B. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02469.x · Cited by 209
Tracing Past Human Male Movements in Northern/Eastern Africa and Western Eurasia: New Clues from Y-Chromosomal Haplogroups E-M78 and J-M12
Cruciani, F., Fratta, R. L., Trombetta, B., Santolamazza, P., Sellitto, D., Béraud-Colomb, É., Dugoujon, J., Crivellaro, F., Benincasa, T., Pascone, R., et al. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm049 · Cited by 210
Independent Wheat B and G Genome Origins in Outcrossing Aegilops Progenitor Haplotypes
Kilian, B., Özkan, H., Deusch, O., Effgen, S., Brandolini, A., Kohl, J., Martin, W. F., & Salamini, F. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl151 · Cited by 209
Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust
Ma, C., Yang, P., Jiang, F., Chapuis, M., Shali, Y., Sword, G. A., & Kang, L. (2012) · Molecular Ecology · doi:10.1111/j.1365-294x.2012.05684.x · Cited by 207
Five Ovine Mitochondrial Lineages Identified From Sheep Breeds of the Near East
Meadows, J. R. S., Cemal, İ., Karaca, O., Gootwine, E., & Kijas, J. (2006) · Genetics · doi:10.1534/genetics.106.068353 · Cited by 204
DNA barcoding and surveillance sampling strategies for Culicoides biting midges (Diptera: Ceratopogonidae) in southern India
Harrup, L. E., Laban, S., Purse, B. V., Reddy, Y. K., Reddy, Y. N., Byregowda, S. M., Kumar, N., Purushotham, K. M., Kowalli, S., Prasad, M., et al. (2016) · Parasites & Vectors · doi:10.1186/s13071-016-1722-z · Cited by 204
The Indonesian archipelago: an ancient genetic highway linking Asia and the Pacific
Tumonggor, M. K., Karafet, T. M., Hallmark, B., Lansing, J. S., Sudoyo, H., Hammer, M. F., & Cox, M. P. (2013) · Journal of Human Genetics · doi:10.1038/jhg.2012.154 · Cited by 209
Sheep Mitochondrial DNA Variation in European, Caucasian, and Central Asian Areas
Tapio, M., Marzanov, N. S., Ozerov, M. Y., Ćinkulov, M., Gonzarenko, G., Kiselyova, T., Murawski, M., Viinalass, H., & Kantanen, J. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl043 · Cited by 203
The Y-Chromosome Tree Bursts into Leaf: 13,000 High-Confidence SNPs Covering the Majority of Known Clades
Hallast, P., Batini, C., Zadik, D., Delser, P. M., Wetton, J. H., Arroyo‐Pardo, E., Cavalleri, G. L., de Knijff, P., Destro‐Bisol, G., Dupuy, B. M., et al. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu327 · Cited by 203
Y-chromosomal evidence of a pastoralist migration through Tanzania to southern Africa
Henn, B. M., Gignoux, C. R., Lin, A. A., Oefner, P. J., Shen, P., Scozzari, R., Cruciani, F., Tishkoff, S. A., Mountain, J. L., & Underhill, P. A. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0801184105 · Cited by 202
Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster
Arora, N., Schuenemann, V. J., Jäger, G., Peltzer, A., Seitz, A., Herbig, A., Strouhal, M., Grillová, L., Sánchez-Busó, L., Kühnert, D., et al. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.245 · Cited by 203
Disuniting Uniformity: A Pied Cladistic Canvas of mtDNA Haplogroup H in Eurasia
Loogväli, E., Roostalu, U., Malyarchuk, B. А., Derenko, M. V., Kivisild, T., Metspalu, E., Tambets, K., Reidla, M., Tolk, H.-V., Parik, J., et al. (2004) · Molecular Biology and Evolution · doi:10.1093/molbev/msh209 · Cited by 200
A Survey of Combinatorial Methods for Phylogenetic Networks
Huson, D. H., & Scornavacca, C. (2010) · Genome Biology and Evolution · doi:10.1093/gbe/evq077 · Cited by 200
Cryptic speciation in a model invertebrate chordate
Caputi, L., Andreakis, N., Mastrototaro, F., Cirino, P., Vassillo, M., & Sordino, P. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0610158104 · Cited by 198
Benefits and risks of exotic biological control agents
CLERCQ, P. D., Mason, P. G., & Babendreier, D. (2011) · BioControl · doi:10.1007/s10526-011-9372-8 · Cited by 198
Phylogeography and Origin of Indian Domestic Goats
Joshi, M. B. (2003) · Molecular Biology and Evolution · doi:10.1093/molbev/msh038 · Cited by 197
Ancient DNA in anthropology: Methods, applications, and ethics
Kaestle, F. A., & Horsburgh, K. A. (2002) · American Journal of Physical Anthropology · doi:10.1002/ajpa.10179 · Cited by 205
The Genetic Legacy of Religious Diversity and Intolerance: Paternal Lineages of Christians, Jews, and Muslims in the Iberian Peninsula
Adams, S., Bosch, E., Balaresque, P. L., Ballereau, S. J., Lee, A. C., Arroyo‐Pardo, E., López-Parra, A. M., Aler, M., Grifo, M. S. G., Brión, M., et al. (2008) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2008.11.007 · Cited by 196
In the name of the father: surnames and genetics
Jobling, M. A. (2001) · Trends in Genetics · doi:10.1016/s0168-9525(01)02284-3 · Cited by 195
Ancient mitochondrial DNA analysis reveals complexity of indigenous North American turkey domestication
Speller, C. F., Kemp, B. M., Wyatt, S. D., Monroe, C., Lipe, W. D., Arndt, U. M., & Yang, D. Y. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909724107 · Cited by 200
Genetic Pattern and Demographic History of Salminus brasiliensis: Population Expansion in the Pantanal Region during the Pleistocene
Mondin, L. A. D. C., Machado, C. B., de Resende, E. K., Marques, D. K. S., & Galetti, P. M. (2018) · Frontiers in Genetics · doi:10.3389/fgene.2018.00001 · Cited by 194
THE AUTOMATION AND EVALUATION OF NESTED CLADE PHYLOGEOGRAPHIC ANALYSIS
Panchal, M., & Beaumont, M. (2007) · Evolution · doi:10.1111/j.1558-5646.2007.00124.x · Cited by 192
A Predominantly Neolithic Origin for Y-Chromosomal DNA Variation in North Africa
Arredi, B., Poloni, E. S., Paracchini, S., Zerjal, T., Fathallah, D. M., Makrelouf, M., Pascali, V. L., Novelletto, A., & Tyler‐Smith, C. (2004) · The American Journal of Human Genetics · doi:10.1086/423147 · Cited by 189
Wolf population genetics in E urope: a systematic review, meta‐analysis and suggestions for conservation and management
Hindrikson, M., Remm, J., Pilot, M., Godinho, R., Strønen, A. V., Baltrūnaitė, L., Czarnomska, S. D., Leonard, J. A., Randi, E., Nowak, C., et al. (2016) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1111/brv.12298 · Cited by 196
Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle
Gaither, M. R., Bowen, B. W., Bordenave, T.-R., Rocha, L. A., Newman, S. J., Gomez, J. A., van Herwerden, L., & Craig, M. T. (2011) · BMC Evolutionary Biology · doi:10.1186/1471-2148-11-189 · Cited by 191
“5 with default settings [50].”
Fungal Planet description sheets: 1042–1111
Crous, P. W., Wingfield, M. J., Chooi, Y., Gilchrist, C. L. M., Lacey, E., Pitt, J. I., Roets, F., Swart, W. J., Cano, J., Valenzuela-López, N., et al. (2020) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/persoonia.2020.44.11 · Cited by 194
Melanesian origin of Polynesian Y chromosomes
Kayser, M., Brauer, S., Weiss, G., Underhill, P., Roewer, L., Schiefenhövel, W., & Stoneking, M. (2000) · Current Biology · doi:10.1016/s0960-9822(00)00734-x · Cited by 190
PARALLEL EVOLUTION OF LOCAL ADAPTATION AND REPRODUCTIVE ISOLATION IN THE FACE OF GENE FLOW
Butlin, R. K., Saura, M., Charrier, G., Jackson, B., André, C., Caballero, A., Coyne, J. A., Galindo, J., Grahame, J., Hollander, J., et al. (2013) · Evolution · doi:10.1111/evo.12329 · Cited by 197
Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex
Vijay, N., Bossu, C. M., Poelstra, J. W., Weissensteiner, M. H., Suh, A., Kryukov, A. P., & Wolf, J. B. W. (2016) · Nature Communications · doi:10.1038/ncomms13195 · Cited by 192
Balancing Selection Is the Main Force Shaping the Evolution of Innate Immunity Genes
Ferrer-Admetlla, A., Bosch, E., Sikora, M., Marquès‐Bonet, T., Ramírez-Soriano, A., Muntasell, A., Navarro, A., Lazarus, R. M., Calafell, F., Bertranpetit, J., et al. (2008) · The Journal of Immunology · doi:10.4049/jimmunol.181.2.1315 · Cited by 187
Molecular phylogeny and biogeography of Picea (Pinaceae): Implications for phylogeographical studies using cytoplasmic haplotypes
Ran, J., Wei, X., & Wang, X. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2006.05.039 · Cited by 187
Genus Paracoccidioides: Species Recognition and Biogeographic Aspects
Theodoro, R. C., Teixeira, M. D. M., Felipe, M. S. S., Paduan, K. D. S., Ribolla, P. E. M., San-Blas, G., & Bagagli, E. (2012) · PLoS ONE · doi:10.1371/journal.pone.0037694 · Cited by 185
Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): Biogeography and systematics implications
Cabanne, G. S., d’Horta, F. M., Sari, E. H. R., dos Santos, F. R., & Miyaki, C. Y. (2008) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2008.09.013 · Cited by 183
Molecular Diversity at 18 Loci in 321 Wild and 92 Domesticate Lines Reveal No Reduction of Nucleotide Diversity during Triticum monococcum (Einkorn) Domestication: Implications for the Origin of Agriculture
Kilian, B., Özkan, H., Walther, A., Kohl, J., Dagan, T., Salamini, F., & Martin, W. F. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm192 · Cited by 183
Origin and Diffusion of mtDNA Haplogroup X
Reidla, M., Kivisild, T., Metspalu, E., Kaldma, K., Tambets, K., Tolk, H.-V., Parik, J., Loogväli, E., Derenko, M. V., Malyarchuk, B. А., et al. (2003) · The American Journal of Human Genetics · doi:10.1086/379380 · Cited by 183
A candidate gene association study on muscat flavor in grapevine (Vitis vinifera L.)
Emanuelli, F., Battilana, J., Costantini, L., Cunff, L. L., Boursiquot, J., This, P., & Grando, S. (2010) · BMC Plant Biology · doi:10.1186/1471-2229-10-241 · Cited by 194
Mitogenomic Meta-Analysis Identifies Two Phases of Migration in the History of Eastern Eurasian Sheep
Lv, F., Peng, W., Yang, J. H., Zhao, Y., Li, W., Liu, M., Ma, Y., Zhao, Q., Yang, G., Wang, F., et al. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv139 · Cited by 192
At Least Two Origins of Fungicide Resistance in Grapevine Downy Mildew Populations
Chen, W., Delmotte, F., Richart‐Cervera, S., Douence, L., Greif, C., & Corio‐Costet, M. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00507-07 · Cited by 182
Origin and Expansion of Haplogroup H, the Dominant Human Mitochondrial DNA Lineage in West Eurasia: The Near Eastern and Caucasian Perspective
Roostalu, U., Kutuev, I. A., Loogväli, E.-L., Metspalu, E., Tambets, K., Reidla, M., Хуснутдинова, Э. К., Usanga, E. A., Kivisild, T., & Villems, R. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl173 · Cited by 179
The herring gull complex is not a ring species
Liebers, D., de Knijff, P., & Helbig, A. J. (2004) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2004.2679 · Cited by 179
Identification of a Tibetan-Specific Mutation in the Hypoxic Gene EGLN1 and Its Contribution to High-Altitude Adaptation
Xiang, K., Ouzhuluobu, Peng, Y., Yang, Z., Zhang, X., Cui, C., Zhang, H., Li, M., Zhang, Y., Bianba, et al. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst090 · Cited by 179
On the edge of Bantu expansions: mtDNA, Y chromosome and lactase persistence genetic variation in southwestern Angola
Coelho, M., Sequeira, F., Luiselli, D., Beleza, S. S., & Rocha, J. (2009) · BMC Evolutionary Biology · doi:10.1186/1471-2148-9-80 · Cited by 177
Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity
Barnett, R., Shapiro, B., Barnes, I., Ho, S. Y. W., Bürger, J., Yamaguchi, N., Higham, T., Wheeler, H. T., Rosendahl, W., Sher, A. V., et al. (2009) · Molecular Ecology · doi:10.1111/j.1365-294x.2009.04134.x · Cited by 177
Reduced Y-Chromosome, but Not Mitochondrial DNA, Diversity in Human Populations from West New Guinea
Kayser, M., Brauer, S., Weiß, G., Schiefenhövel, W., Underhill, P. A., Shen, P., Oefner, P. J., Tommaseo-Ponzetta, M., & Stoneking, M. (2003) · The American Journal of Human Genetics · doi:10.1086/346065 · Cited by 179
New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studies
Baums, I. B., Devlin-Durante, M. K., & LaJeunesse, T. C. (2014) · Molecular Ecology · doi:10.1111/mec.12788 · Cited by 172
Epidemiological and Molecular Studies on Lumpy Skin Disease Outbreaks in Turkey during 2014-2015
Şevik, M., & Doğan, M. (2016) · Transboundary and Emerging Diseases · doi:10.1111/tbed.12501 · Cited by 174
The genetic architecture of target‐site resistance to pyrethroid insecticides in the African malaria vectors Anopheles gambiae and Anopheles coluzzii
Clarkson, C. S., Miles, A., Harding, N. J., O’Reilly, A. O., Weetman, D., Kwiatkowski, D. P., & Donnelly, M. J. (2021) · Molecular Ecology · doi:10.1111/mec.15845 · Cited by 167
Phylogenetic and phylogeographic relationships in the crayfish genus Austropotamobius inferred from mitochondrial COI gene sequences
Trontelj, P., Machino, Y., & Šket, B. (2004) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2004.09.010 · Cited by 174
What's in a name? Y chromosomes, surnames and the genetic genealogy revolution
King, T. E., & Jobling, M. A. (2009) · Trends in Genetics · doi:10.1016/j.tig.2009.06.003 · Cited by 173
Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level
Natarajan, C., Projecto-Garcia, J., Moriyama, H., Weber, R. E., Muñoz‐Fuentes, V., Green, A. J., Kopuchian, C., Tubaro, P. L., Alza, L., Bulgarella, M., et al. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005681 · Cited by 171
A Genetic Landscape Reshaped by Recent Events: Y-Chromosomal Insights into Central Asia
Zerjal, T., Wells, R. S., Yuldasheva, N. Y., Ruzibakiev, R., & Tyler‐Smith, C. (2002) · The American Journal of Human Genetics · doi:10.1086/342096 · Cited by 170
Deciphering patterns of transoceanic dispersal: the evolutionary origin and biogeography of coastal lizards (Cryptoblepharus) in the Western Indian Ocean region
Rocha, S., Carretero, M. Á., Miguel Vences, B., Glaw, F., & Harris, D. J. (2005) · Journal of Biogeography · doi:10.1111/j.1365-2699.2005.01375.x · Cited by 169
Phylogeography of the bullhead Cottus gobio (Pisces: Teleostei: Cottidae) suggests a pre‐Pleistocene origin of the major central European populations
Englbrecht, C. C., Freyhof, J., Nolte, A. W., Rassmann, K., Schliewen, U. K., & Tautz, D. (2000) · Molecular Ecology · doi:10.1046/j.1365-294x.2000.00912.x · Cited by 168
Phylogeography and Genetic Variation of Triatoma dimidiata, the Main Chagas Disease Vector in Central America, and Its Position within the Genus Triatoma
Bargues, M. D., Klisiowicz, D. D. R., Gónzález‐Candelas, F., Ramsey, J. M., Monroy, C., Ponce, C., Salazar-Schettino, P. M., Panzera, F., Abad‐Franch, F., Sousa, O. E., et al. (2008) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0000233 · Cited by 167
Structural variation on the short arm of the human Y chromosome: recurrent multigene deletions encompassing Amelogenin Y
Jobling, M. A., Lo, I. C. C., Turner, D., Bowden, G. R., Lee, A. C., Xue, Y., Carvalho‐Silva, D., Hurles, M. E., Adams, S. M., Chang, Y. M., et al. (2006) · Human Molecular Genetics · doi:10.1093/hmg/ddl465 · Cited by 164
MSH3 modifies somatic instability and disease severity in Huntington’s and myotonic dystrophy type 1
Flower, M. D., Lomeikaite, V., Ciosi, M., Cumming, S. A., Morales, F., Lo, K., Moss, D. J. H., Jones, L., Holmans, P., Monckton, D. G., et al. (2019) · Brain · doi:10.1093/brain/awz115 · Cited by 165
Trypanosoma cruzi I genotypes in different geographical regions and transmission cycles based on a microsatellite motif of the intergenic spacer of spliced-leader genes
Cura, C. I., Mejía‐Jaramillo, A. M., Duffy, T., Burgos, J. M., Rodriguero, M. S., Cardinal, M. V., Kjos, S. A., Gurgel‐Gonçalves, R., Blanchet, D., Pablos, L. M. D., et al. (2010) · International Journal for Parasitology · doi:10.1016/j.ijpara.2010.06.006 · Cited by 165
Revising the recent evolutionary history of equids using ancient DNA
Orlando, L., Metcalf, J. L., Alberdi, M. T., Antunes, M. T., Bonjean, D., Otte, M., Martin, F. M., Eisenmann, V., Mashkour, M., R, F. M., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0903672106 · Cited by 165
HIV rebound is predominantly fueled by genetically identical viral expansions from diverse reservoirs
De Scheerder, M.-A., Vrancken, B., Dellicour, S., Schlub, T., Lee, E., Shao, W., Rutsaert, S., Verhofstede, C., Kerre, T., Malfait, T., et al. (2019) · Cell Host & Microbe · doi:10.1016/j.chom.2019.08.003 · Cited by 165
A functional ABCA1 gene variant is associated with low HDL-cholesterol levels and shows evidence of positive selection in Native Americans
Acuña-Alonzo, V., Flores-Dorantes, M. T., Kruit, J. K., Villarreal-Molina, M. T., Arellano‐Campos, O., Hünemeier, T., Moreno‐Estrada, A., Ortiz‐López, M. G., Villamil‐Ramírez, H., León‐Mimila, P., et al. (2010) · Human Molecular Genetics · doi:10.1093/hmg/ddq173 · Cited by 164
Spread of an Inactive Form of Caspase-12 in Humans Is Due to Recent Positive Selection
Xue, Y., Daly, A., Yngvadóttir, B., Liu, M., Coop, G., Kim, Y., Sabeti, P. C., Chen, Y., Stalker, J., Huckle, E. J., et al. (2006) · The American Journal of Human Genetics · doi:10.1086/503116 · Cited by 166
Estimating Global Biodiversity: The Role of Cryptic Insect Species
Li, X., & Wiens, J. J. (2022) · Systematic Biology · doi:10.1093/sysbio/syac069 · Cited by 163
Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between Native Americans and Indigenous Altaians
Dulik, M. C., Zhadanov, S. I., Osipova, L. P., Askapuli, A., Gau, L., Gokcumen, O., Rubinstein, S., & Schurr, T. G. (2012) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2011.12.014 · Cited by 161
Mitochondrial and nuclear DNA analyses reveal fine scale geographic structure in bottlenose dolphins (Tursiops truncatus) in the Gulf of Mexico
Sellas, A. B., Wells, R. S., & Rosel, P. E. (2005) · Conservation Genetics · doi:10.1007/s10592-005-9031-7 · Cited by 160
Evidence of Still-Ongoing Convergence Evolution of the Lactase Persistence T-13910 Alleles in Humans
Enattah, N. S., Trudeau, A., Pimenoff, V. N., Maiuri, L., Auricchio, S., Greco, L., Rossi, M., Lentze, M. J., Seo, J., Rahgozar, S., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/520705 · Cited by 160
Effects of Pleistocene glaciations and rivers on the population structure of Bornean orangutans ( Pongo pygmaeus )
Arora, N., Nater, A., van Schaik, C. P., Willems, E. P., van Noordwijk, M. A., Goossens, B., Morf, N. V., Bastian, M. L., Knott, C. D., Morrogh-Bernard, H. C., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1010169107 · Cited by 160
Y-chromosomal evidence of the cultural diffusion of agriculture in southeast Europe
Battaglia, V., Fornarino, S., Al-Zahery, N., Olivieri, A., Pala, M., Myres, N. M., King, R., Rootsi, S., Marjanović, D., Primorac, D., et al. (2008) · European Journal of Human Genetics · doi:10.1038/ejhg.2008.249 · Cited by 164
New uses for new haplotypes
Jobling, M. A., & Tyler‐Smith, C. (2000) · Trends in Genetics · doi:10.1016/s0168-9525(00)02057-6 · Cited by 160
Phylogeographic history of grey wolves in Europe
Pilot, M., Branicki, W., Jędrzejewski, W., Goszczyński, J., Jędrzejewska, B., Dykyy, I., Shkvyrya, M., & Tsingarska, E. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-104 · Cited by 158
Molecular tools and analytical approaches for the characterization of farm animal genetic diversity
Lenstra, J. A., Groeneveld, L. F., Eding, H., Kantanen, J., Williams, J. L., Taberlet, P., Nicolazzi, E. L., Sölkner, J., Simianer, H., Ciani, E., et al. (2012) · Animal Genetics · doi:10.1111/j.1365-2052.2011.02309.x · Cited by 164
Sympatric bromeliad species (Pitcairnia spp.) facilitate tests of mechanisms involved in species cohesion and reproductive isolation in Neotropical inselbergs
Palma‐Silva, C., Wendt, T., Pinheiro, F., Barbará, T., Fay, M. F., Cozzolino, S., & Lexer, C. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05143.x · Cited by 156
Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution
Janssen, T., Karssen, G., Verhaeven, M., Coyne, D., & Bert, W. (2016) · Scientific Reports · doi:10.1038/srep22591 · Cited by 157
Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary
Almathen, F. S., Charruau, P., Mohandesan, E., Mwacharo, J. M., Orozco‐terWengel, P., Pitt, D., Abdussamad, A. M., Uerpmann, M., Uerpmann, H., Cupere, B. D., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1519508113 · Cited by 166
Decoding the evolution and transmissions of the novel pneumonia coronavirus (SARS-CoV-2 / HCoV-19) using whole genomic data
Yu, W.-B., Tang, G.-D., Zhang, L., & Corlett, R. T. (2020) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2020.022 · Cited by 157
The timing of pigmentation lightening in Europeans
Beleza, S., Santos, A. M., McEvoy, B., Alves, I., Martinho, C., Cameron, E., Shriver, M. D., Parra, E. J., & Rocha, J. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mss207 · Cited by 156

Authors: Bandelt, H. J., Forster, P., & Rohl, A.
Affiliations: Universität Hamburg (DE)
Venue: Molecular Biology and Evolution
Publisher: Oxford University Press (OUP)
Published: 1999-01-01
Volume: 16
Issue: 1
Pages: 37-48
ISSN: 0737-4038 (ISSN-L)
1537-1719
DOI: 10.1093/oxfordjournals.molbev.a026036
OpenAlex: W2096420865
Cited by: 11,742
References: 14
Citations by year: 2026: 408 · 2025: 515 · 2024: 600 · 2023: 660 · 2022: 738 · 2021: 799 · 2020: 794 · 2019: 675 · 2018: 664 · 2017: 690 · 2016: 691 · 2015: 662 · 2014: 623 · 2013: 593 · 2012: 514
FWCI: 9.76
Type: journal article
Language: en
Open access: bronze
doi.org
Locations: Molecular Biology and Evolution (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
Keywords: median-joining network, intraspecific phylogeny, phylogenetic networks, maximum parsimony, homoplasy, multistate characters, mitochondrial DNA, Kruskal's algorithm
MeSH terms: Algorithms, DNA, Mitochondrial, Humans, Models, Genetic, Phylogeny, Genome, Human

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Median-joining networks for inferring intraspecific phylogenies

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Citations

Cites

Cited by

Related

Metadata

Record

About these checks