Median-joining networks for inferring intraspecific phylogenies

Shortest Connection Networks And Some Generalizations

Prim, R. C. (1957) · Bell System Technical Journal · doi:10.1002/j.1538-7305.1957.tb01515.x · Cited by 4,659

Methods for Computing Wagner Trees

Farris, J. S. (1970) · Systematic Biology · doi:10.1093/sysbio/19.1.83 · Cited by 1,243

Mitochondrial portraits of human populations using median networks.

Bandelt, H. J., Forster, P., Sykes, B. C., & Richards, M. B. (1995) · Genetics · doi:10.1093/genetics/141.2.743 · Cited by 1,071

Methods for Computing Wagner Trees

Farris, J. S. (1970) · Systematic Zoology · doi:10.2307/2412028 · Cited by 937

Classification of European mtDNAs From an Analysis of Three European Populations

Torroni, A., Huoponen, K., Francalacci, P., Petrozzi, M., Morelli, L., Scozzari, R., Obinu, D. A., Savontaus, M., & Wallace, D. C. (1996) · Genetics · doi:10.1093/genetics/144.4.1835 · Cited by 838

Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony.

Excoffier, L., & Smouse, P. E. (1994) · Genetics · doi:10.1093/genetics/136.1.343 · Cited by 460

mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans.

Torroni, A., Sukernik, R. I., Schurr, T. G., Starikorskaya, Y. B., Cabell, M. F., Crawford, M. H., Comuzzie, A. G., & Wallace, D. C. (1993) · PubMed · Cited by 389

Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups.

Chen, Y. S., Torroni, A., Excoffier, L., Santachiara‐Benerecetti, A. S., & Wallace, D. C. (1995) · PubMed Central · Cited by 324

Nonneutral Mitochondrial DNA Variation in Humans and Chimpanzees

Nachman, M. W., Brown, W. M., Stoneking, M., & Aquadro, C. F. (1996) · Genetics · doi:10.1093/genetics/142.3.953 · Cited by 211

Phylogenetic Inference

Pardi, F. (2024) · doi:10.1002/9781394284252.ch6 · Cited by 121

The Genetic Impact of Translocations and Habitat Fragmentation in Chamois (Rupicapra) spp.

Crestanello, B., Pecchioli, E., Vernesi, C., Mona, S., Martínková, N., Janiga, M., Hauffe, H. C., & Bertorelle, G. (2009) · Journal of Heredity · doi:10.1093/jhered/esp053 · Cited by 60

A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla)

Petzold, A., & Hassanin, A. (2020) · PLOS ONE · doi:10.1371/journal.pone.0217956 · Cited by 60

Genetic diversity of Anopheles stephensi in Ethiopia provides insight into patterns of spread

Carter, T. E., Yared, S., Getachew, D., Spear, J., Choi, S. H., Samake, J. N., Mumba, P., Dengela, D., Yohannes, G., Chibsa, S., et al. (2021) · Parasites & Vectors · doi:10.1186/s13071-021-05097-3 · Cited by 48

Predominant African-Derived mtDNA in Caribbean and Brazilian Creole Cattle Is Also Found in Spanish Cattle (Bos taurus)

Miretti, M. M., Dunner, S., Naves, M., Contel, E. P., & Ferro, J. A. (2004) · Journal of Heredity · doi:10.1093/jhered/esh070 · Cited by 56

Increased Resolution of Y Chromosome Haplogroup T Defines Relationships among Populations of the Near East, Europe, and Africa

Mendez, F. L., Karafet, T. M., Krahn, T., Ostrer, H., Soodyall, H., & Hammer, M. F. (2011) · Human Biology · doi:10.3378/027.083.0103 · Cited by 60

Genome-Wide and Paternal Diversity Reveal a Recent Origin of Human Populations in North Africa

Fadhlaoui-Zid, K., Haber, M., Martínez-Cruz, B., Zalloua, P., Benammar Elgaaied, A., & Comas, D. (2013) · PLoS ONE · doi:10.1371/journal.pone.0080293 · Cited by 52

Temporal genetic variation of the red fox, Vulpes vulpes, across western Europe and the British Isles

Edwards, C. J., Soulsbury, C. D., Statham, M. J., Ho, S. Y. W., Wall, D., Dolf, G., Iossa, G., Baker, P. J., Harris, S., Sacks, B. N., et al. (2012) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2012.10.010 · Cited by 48

Comprehensive analysis of the mitochondrial DNA diversity in Chinese cattle

Xia, X., Qu, K., Zhang, G., Jia, Y., Ma, Z., Zhao, X., Huang, Y., Chen, H., Huang, B., & Lei, C. (2019) · Animal Genetics · doi:10.1111/age.12749 · Cited by 48

Legacies of Domestication, Trade and Herder Mobility Shape Extant Male Zebu Cattle Diversity in South Asia and Africa

Pérez-Pardal, L., Sánchez-Gracia, A., Álvarez, I., Traoré, A., Ferraz, J. B. S., Fernández, I., Costa, V., Chen, S., Tapio, M., Cantet, R. J. C., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-36444-7 · Cited by 45

Novel point mutations in the ERG11 gene in clinical isolates of azole resistant Candida species

Silva, D. B. D. S., Rodrigues, L. M. C., Almeida, A. A. D., Oliveira, K. M. P. D., & Grisolia/, A. B. (2016) · Memórias do Instituto Oswaldo Cruz · doi:10.1590/0074-02760150400 · Cited by 42

Sequence variation in human succinate dehydrogenase genes: evidence for long-term balancing selection on SDHA

Baysal, B. E., Lawrence, E. C., & Ferrell, R. E. (2007) · BMC Biology · doi:10.1186/1741-7007-5-12 · Cited by 39

Species boundaries and evolutionary lineages in the blue green damselfishes Chromis viridis and Chromis atripectoralis (Pomacentridae)

Froukh, T., & Kochzius, M. (2008) · Journal of Fish Biology · doi:10.1111/j.1095-8649.2007.01746.x · Cited by 32

Ancestral Matrilineages and Mitochondrial DNA Diversity of the Lidia Cattle Breed

Cortés, O., Tupac‐Yupanqui, I., Dunner, S., García‐Atance, M. A., García, D., Fernández, J., & Cañón, J. (2008) · Animal Genetics · doi:10.1111/j.1365-2052.2008.01782.x · Cited by 32

East African origins for Madagascan chickens as indicated by mitochondrial DNA

Herrera, M. B., Thomson, V. A., Wadley, J. J., Piper, P. J., Sulandari, S., Dharmayanthi, A. B., Kraitsek, S., Gongora, J., & Austin, J. J. (2017) · Royal Society Open Science · doi:10.1098/rsos.160787 · Cited by 28

Quasispecies-like behavior observed in catalytic RNA populations evolving in a test tube

Diaz Arenas, C., & Lehman, N. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-80 · Cited by 25

Impacts of biological globalization in the Mediterranean: Unveiling the deep history of human-mediated gamebird dispersal

Forcina, G., Guerrini, M., van Grouw, H., Gupta, B. K., Panayides, P., Hadjigerou, P., Al-Sheikhly, O. F., Awan, M. N., Khan, A. A., Zeder, M. A., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1500677112 · Cited by 24

Distinct selective forces and Neanderthal introgression shaped genetic diversity at genes involved in neurodevelopmental disorders

Mozzi, A., Forni, D., Cagliani, R., Pozzoli, U., Clerici, M., & Sironi, M. (2017) · Scientific Reports · doi:10.1038/s41598-017-06440-4 · Cited by 19

Regional selection of the brain size regulating gene CASC5 provides new insight into human brain evolution

Shi, L., Hu, E., Wang, Z., Liu, J., Li, J., Li, M., Chen, H., Yu, C., Jiang, T., & Su, B. (2017) · Human Genetics · doi:10.1007/s00439-016-1748-5 · Cited by 20

High genetic diversity and low population structure in red foxes (Vulpes vulpes) from Croatia

Galov, A., Sindičić, M., Andreanszky, T., Čurković, S., Dežđek, D., Slavica, A., Hartl, G. B., & Krueger, B. (2014) · Mammalian Biology · doi:10.1016/j.mambio.2013.10.003 · Cited by 19

Population genomics of the muskox' resilience in the near absence of genetic variation

Pečnerová, P., Lord, E., Garcia‐Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., et al. (2024) · Molecular Ecology · doi:10.1111/mec.17205 · Cited by 19

Ancient DNA Extracted from Danish Aurochs (Bos Primigenius): Genetic Diversity and Preservation

Gravlund, P., Aaris-Sørensen, K., Hofreiter, M., Meyer, M., Bollback, J. P., & Noe-Nygaard, N. (2012) · Annals of Anatomy - Anatomischer Anzeiger · doi:10.1016/j.aanat.2011.10.011 · Cited by 19

Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering.

Cowart, D. A., Durand, L., Cambon-Bonavita, M.-A., & Arnaud-Haond, S. (2017) · PLoS ONE · doi:10.1371/journal.pone.0172543 · Cited by 17

Ancient DNA Confirms Diverse Origins of Early Post-Columbian Cattle in the Americas

Delsol, N., Stucky, B. J., Oswald, J. A., Cobb, C. R., Emery, K. F., & Guralnick, R. (2023) · Scientific Reports · doi:10.1038/s41598-023-39518-3 · Cited by 17

Oxytocin receptor gene sequences in owl monkeys and other primates show remarkable interspecific regulatory and protein coding variation

Babb, P. L., Fernandez-Duque, E., & Schurr, T. G. (2015) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2015.05.006 · Cited by 16

Sibling species of the major malaria vector Anopheles gambiae display divergent preferences for aquatic breeding sites in southern Nigeria

Ebhodaghe, F. I., Sanchez-Vargas, I., Isaac, C., Foy, B. D., & Hemming-Schroeder, E. (2024) · Malaria Journal · doi:10.1186/s12936-024-04871-9 · Cited by 15

Y-Chromosome Genetic Diversity of Bos indicus Cattle in Close Proximity to the Centre of Domestication

Ganguly, I., Jeevan, C., Singh, S., Dixit, S. P., Sodhi, M., Ranjan, A., Kumar, S., & Sharma, A. (2020) · Scientific Reports · doi:10.1038/s41598-020-66133-3 · Cited by 13

Mitochondrial DNA variation of Nigerian domestic helmeted guinea fowl

Adeola, A. C., Ommeh, S. C., Murphy, R. W., Wu, S., Peng, M., & Zhang, Y. (2015) · Animal Genetics · doi:10.1111/age.12324 · Cited by 13

Mitochondrial DNA D-loop diversity of the helmeted guinea fowls in Kenya and its implications on HSP70 gene functional polymorphism

Murunga, P., Kennedy, G. M., Imboma, T., Malaki, P., Kariuki, D., Ndiema, E., Obanda, V., Agwanda, B., Lichoti, J. K., & Ommeh, S. C. (2018) · BioMed Research International · doi:10.1155/2018/7314038 · Cited by 11

Whole genome insights into genetic diversity, introgression, and adaptation of Yunnan indigenous cattle of Southwestern China

Guan, X., Xiang, W., Qu, K., Ahmed, Z., Liu, J., Cai, M., Zhang, J., Chen, N., Lei, C., & Huang, B. (2025) · BMC Genomics · doi:10.1186/s12864-024-11033-3 · Cited by 10

Maternal genetic and phylogenetic characteristics of domesticated cattle in northwestern China

Cai, Y., Jiao, T., Lei, Z., Liu, L., & Zhao, S. (2018) · PLOS ONE · doi:10.1371/journal.pone.0209645 · Cited by 10

Origin and timing of New Zealand's earliest domestic chickens: Polynesian commensals or European introductions?

Wood, J. R., Herrera, M. J. B., Scofield, R. P., & Wilmshurst, J. M. (2016) · Royal Society Open Science · doi:10.1098/rsos.160258 · Cited by 7

Mitogenomic Crocodylia phylogeny and population structure of Crocodylus porosus including the extinct Seychelles crocodile

Agne, S., Arnold, P., Belle, B., Straube, N., Hofreiter, M., & Glaw, F. (2026) · Royal Society Open Science · doi:10.1098/rsos.251546 · Cited by 1

Expression of host defense scavenger receptors in spondylarthropathy

McBeth (2001) · Pure Amsterdam UMC · doi:10.1002/1529-0131(200104)44:4 · Cited by 1

Median-Joining Networks

(2008) · Springer eBooks · doi:10.1007/978-1-4020-6754-9_10040

Median Networks: Speedy Construction and Greedy Reduction, One Simulation, and Two Case Studies from Human mtDNA

Bandelt, H., Macaulay, V. A., & Richards, M. B. (2000) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.2000.0792 · Cited by 214

On the Use of Median-Joining Networks: A Philosophical and Empirical Evaluation of Its Suitability in Evolutionary Biology

Kong, S. (2015) · TSpace (University of Toronto) · Cited by 1

Mitochondrial portraits of human populations using median networks.

Bandelt, H. J., Forster, P., Sykes, B. C., & Richards, M. B. (1995) · Genetics · doi:10.1093/genetics/141.2.743 · Cited by 1,071

Evaluating Intraspecific “Network” Construction Methods Using Simulated Sequence Data: Do Existing Algorithms Outperform the Global Maximum Parsimony Approach?

Cassens, I., Mardulyn, P., & Milinkovitch, M. C. (2005) · Systematic Biology · doi:10.1080/10635150590945377 · Cited by 147