Cited by 59

The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.

Polygenic influences on dyslipidemias

Dron, Jacqueline S., Hegele, Robert A.·2018·Current Opinion in Lipidology

Abstract

Purpose of review: Rare large-effect genetic variants underlie monogenic dyslipidemias, whereas common small-effect genetic variants – single nucleotide polymorphisms (SNPs) – have modest influences on lipid traits. Over the past decade, these small-effect SNPs have been shown to cumulatively exert consistent effects on lipid phenotypes under a polygenic framework, which is the focus of this review. Recent findings: Several groups have reported polygenic risk scores assembled from lipid-associated SNPs, and have applied them to their respective phenotypes. For lipid traits in the normal population distribution, polygenic effects quantified by a score that integrates several common polymorphisms account for about 20–30% of genetic variation. Among individuals at the extremes of the distribution, that is, those with clinical dyslipidemia, the polygenic component includes both rare variants with large effects and common polymorphisms: depending on the trait, 20–50% of susceptibility can be accounted for by this assortment of genetic variants. Summary: Accounting for polygenic effects increases the numbers of dyslipidemic individuals who can be explained genetically, but a substantial proportion of susceptibility remains unexplained. Whether documenting the polygenic basis of dyslipidemia will affect outcomes in clinical trials or prospective observational studies remains to be determined.

Overview

Integrity signals

Registry

Crossref · 10.1097/mol.0000000000000482

Cites

7 of 7 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Only an estimated 20-30% of the heritability of lipid traits is currently explained.

    “Moreover, only an estimated 20–30% of the heritability of lipid traits is currently explained[12].”

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 56

  1. Jeff, 2016, What can we learn about lipoprotein metabolism and coronary heart disease from studying rare variants?, Curr Opin Lipidol, 27, 99, 10.1097/MOL.0000000000000277 · DOI
  2. Drenos, 2017, Mechanistic insights from combining genomics with metabolomics, Curr Opin Lipidol, 28, 99, 10.1097/MOL.0000000000000393 · DOI
  3. Graham, 2017, Molecular diagnosis of familial hypercholesterolaemia, Curr Opin Lipidol, 28, 313, 10.1097/MOL.0000000000000430 · DOI
  4. Aryal, 2017, MicroRNAs and lipid metabolism, Curr Opin Lipidol, 28, 273, 10.1097/MOL.0000000000000420 · DOI · Paper page
  5. Dron, 2016, Genetics of lipid and lipoprotein disorders and traits, Curr Genet Med Rep, 4, 130, 10.1007/s40142-016-0097-y · DOI
  6. Hegele, 2015, Targeted next-generation sequencing in monogenic dyslipidemias, Curr Opin Lipidol, 26, 103, 10.1097/MOL.0000000000000163 · DOI
  7. Hegele, 2002, SNP judgments and freedom of association, Arterioscler Thromb Vasc Biol, 22, 1058, 10.1161/01.ATV.0000026801.56080.14 · DOI
  8. Christoffersen, 2015, Novel genes in LDL metabolism: a comprehensive overview, Curr Opin Lipidol, 26, 179, 10.1097/MOL.0000000000000175 · DOI
  9. Willer, 2013, Discovery and refinement of loci associated with lipid levels, Nat Genet, 45, 1274, 10.1038/ng.2797 · DOI
  10. Johansen, 2010, Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia, Nat Genet, 42, 684, 10.1038/ng.628 · DOI · Paper page
  11. Johansen, 2012, Excess of rare variants in nongenome-wide association study candidate genes in patients with hypertriglyceridemia, Circ Cardiovasc Genet, 5, 66, 10.1161/CIRCGENETICS.111.960864 · DOI
  12. Motazacker, 2013, Evidence of a polygenic origin of extreme high-density lipoprotein cholesterol levels, Arterioscler Thromb Vasc Biol, 33, 1521, 10.1161/ATVBAHA.113.301505 · DOI
  13. Janssens, 2006, Predictive testing for complex diseases using multiple genes: fact or fiction?, Genet Med, 8, 395, 10.1097/01.gim.0000229689.18263.f4 · DOI
  14. Iacocca, 2017, Use of next-generation sequencing to detect LDLR gene copy number variation in familial hypercholesterolemia, J Lipid Res, 58, 2202, 10.1194/jlr.D079301 · DOI
  15. Liu, 2017, Exome-wide association study of plasma lipids in >300,000 individuals, Nat Genet, 49, 1758, 10.1038/ng.3977 · DOI · Paper page
  16. Lu, 2017, Exome chip meta-analysis identifies novel loci and East Asian-specific coding variants that contribute to lipid levels and coronary artery disease, Nat Genet, 49, 1722, 10.1038/ng.3978 · DOI
  17. Johansen, 2014, LipidSeq: a next-generation clinical resequencing panel for monogenic dyslipidemias, J Lipid Res, 55, 765, 10.1194/jlr.D045963 · DOI
  18. Smith, 2015, Current applications of genetic risk scores to cardiovascular outcomes and subclinical phenotypes, Curr Epidemiol Rep, 2, 180, 10.1007/s40471-015-0046-4 · DOI
  19. Talmud, 2013, Use of low-density lipoprotein cholesterol gene score to distinguish patients with polygenic and monogenic familial hypercholesterolaemia: a case-control study, Lancet, 381, 1293, 10.1016/S0140-6736(12)62127-8 · DOI
  20. Kathiresan, 2008, Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans, Nat Genet, 40, 189, 10.1038/ng.75 · DOI · Paper page
  21. Kathiresan, 2009, Common variants at 30 loci contribute to polygenic dyslipidemia, Nat Genet, 41, 56, 10.1038/ng.291 · DOI · Paper page
  22. Asselbergs, 2012, Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci, Am J Hum Genet, 91, 823, 10.1016/j.ajhg.2012.08.032 · DOI
  23. Wu, 2013, Trans-ethnic fine-mapping of lipid loci identifies population-specific signals and allelic heterogeneity that increases the trait variance explained, PLoS Genet, 9, e1003379, 10.1371/journal.pgen.1003379 · DOI
  24. Surakka, 2015, The impact of low-frequency and rare variants on lipid levels, Nat Genet, 47, 589, 10.1038/ng.3300 · DOI · Paper page
  25. Sabatti, 2009, Genome-wide association analysis of metabolic traits in a birth cohort from a founder population, Nat Genet, 41, 35, 10.1038/ng.271 · DOI
  26. Chasman, 2008, Genetic loci associated with plasma concentration of low-density lipoprotein cholesterol, high-density lipoprotein cholesterol, triglycerides, apolipoprotein A1, and Apolipoprotein B among 6382 white women in genome-wide analysis with replication, Circ Cardiovasc Genet, 1, 21, 10.1161/CIRCGENETICS.108.773168 · DOI
  27. Aulchenko, 2009, Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts, Nat Genet, 41, 47, 10.1038/ng.269 · DOI
  28. Kathiresan, 2007, A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study, BMC Med Genet, 8, S17, 10.1186/1471-2350-8-S1-S17 · DOI
  29. Kim, 2011, Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits, Nat Genet, 43, 990, 10.1038/ng.939 · DOI
  30. Below, 2016, Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs, Sci Rep, 6, 19429, 10.1038/srep19429 · DOI
  31. Takeuchi, 2012, Association of genetic variants influencing lipid levels with coronary artery disease in Japanese individuals, PLoS One, 7, e46385, 10.1371/journal.pone.0046385 · DOI
  32. Wu, 2013, Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels, J Lipid Res, 54, 3198, 10.1194/jlr.P042077 · DOI
  33. de Vlaming, 2015, The current and future use of ridge regression for prediction in quantitative genetics, Biomed Res Int, 2015, 143712, 10.1155/2015/143712 · DOI
  34. Ware, 2017, Heterogeneity in polygenic scores for common human traits, bioRxiv
  35. Poirier, 2015, Resampling to address the winner's curse in genetic association analysis of time to event, Genet Epidemiol, 39, 518, 10.1002/gepi.21920 · DOI
  36. Wang, 2016, Polygenic versus monogenic causes of hypercholesterolemia ascertained clinically, Arterioscler Thromb Vasc Biol, 36, 2439, 10.1161/ATVBAHA.116.308027 · DOI
  37. Sjouke, 2016, Children with hypercholesterolemia of unknown cause: value of genetic risk scores, J Clin Lipidol, 10, 851, 10.1016/j.jacl.2016.02.017 · DOI
  38. Lamiquiz-Moneo, 2017, Single nucleotide variants associated with polygenic hypercholesterolemia in families diagnosed clinically with familial hypercholesterolemia, Rev Esp Cardiol (Engl Ed)
  39. Tikkanen, 2011, Association of known loci with lipid levels among children and prediction of dyslipidemia in adults, Circ Cardiovas Genet, 4, 673, 10.1161/CIRCGENETICS.111.960369 · DOI
  40. Paquette, 2017, Polygenic risk score predicts prevalence of cardiovascular disease in patients with familial hypercholesterolemia, J Clin Lipidol, 11, 725.e5
  41. Buscot, 2016, The combined effect of common genetic risk variants on circulating lipoproteins is evident in childhood: a longitudinal analysis of the cardiovascular risk in young Finns study, PLoS One, 11, e0146081, 10.1371/journal.pone.0146081 · DOI
  42. Latsuzbaia, 2016, Associations of genetic variants for adult lipid levels with lipid levels in children. The Generation R Study, J Lipid Res, 57, 2185, 10.1194/jlr.P066902 · DOI
  43. Justesen, 2015, Interactions of lipid genetic risk scores with estimates of metabolic health in a Danish population, Circ Cardiovasc Genet, 8, 465, 10.1161/CIRCGENETICS.114.000637 · DOI
  44. Lutsey, 2012, Relation of lipid gene scores to longitudinal trends in lipid levels and incidence of abnormal lipid levels among individuals of European ancestry: the Atherosclerosis Risk in Communities (ARIC) study, Circ Cardiovasc Genet, 5, 73, 10.1161/CIRCGENETICS.111.959619 · DOI
  45. Piccolo, 2009, Evaluation of genetic risk scores for lipid levels using genome-wide markers in the Framingham Heart Study, BMC Proc, 3, S46, 10.1186/1753-6561-3-S7-S46 · DOI
  46. Zubair, 2014, Genetic risk score and adiposity interact to influence triglyceride levels in a cohort of Filipino women, Nutr Diabetes, 4, e118, 10.1038/nutd.2014.16 · DOI
  47. Dron, 2017, Polygenic determinants in extremes of high-density lipoprotein cholesterol, J Lipid Res, 58, 2162, 10.1194/jlr.M079822 · DOI
  48. Raffield, 2013, Impact of HDL genetic risk scores on coronary artery calcified plaque and mortality in individuals with type 2 diabetes from the Diabetes Heart Study, Cardiovasc Diabetol, 12, 95, 10.1186/1475-2840-12-95 · DOI
  49. Singaraja, 2013, The impact of partial and complete loss-of-function mutations in endothelial lipase on high-density lipoprotein levels and functionality in humans, Circ Cardiovasc Genet, 6, 54, 10.1161/CIRCGENETICS.111.962613 · DOI
  50. Tietjen, 2012, Segregation of LIPG, CETP, and GALNT2 mutations in Caucasian families with extremely high HDL cholesterol, PLoS One, 7, e37437, 10.1371/journal.pone.0037437 · DOI
  51. Kiss, 2007, Genetic etiology of isolated low HDL syndrome: incidence and heterogeneity of efflux defects, Arterioscler Thromb Vasc Biol, 27, 1139, 10.1161/ATVBAHA.106.137646 · DOI
  52. Holleboom, 2011, High prevalence of mutations in LCAT in patients with low HDL cholesterol levels in The Netherlands: identification and characterization of eight novel mutations, Hum Mutat, 32, 1290, 10.1002/humu.21578 · DOI
  53. Candini, 2010, Identification and characterization of novel loss of function mutations in ATP-binding cassette transporter A1 in patients with low plasma high-density lipoprotein cholesterol, Atherosclerosis, 213, 492, 10.1016/j.atherosclerosis.2010.08.062 · DOI
  54. Sadananda, 2015, Targeted next-generation sequencing to diagnose disorders of HDL cholesterol, J Lipid Res, 56, 1993, 10.1194/jlr.P058891 · DOI
  55. Stahel, 2017, Polygenic Risk for Hypertriglyceridemia Can Mimic a Major Monogenic Mutation, Ann Intern Med, 167, 360, 10.7326/L17-0182 · DOI
  56. Boyle, 2017, An expanded view of complex traits: from polygenic to omnigenic, Cell, 169, 1177, 10.1016/j.cell.2017.05.038 · DOI · Paper page

Cited by

Sorted by citations

Metadata

Authors
Dron, J. S., & Hegele, R. A.
Affiliations
Department of Biochemistry
Venue
Current Opinion in Lipidology
Published
2018-04
Volume
29
Issue
2
Pages
133-143
ISSN
  • 0957-9672
  • 1473-6535
Cited by
59
References
7
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review