Cited by 3,487Genetic Associations and EpidemiologyLipoproteins and Cardiovascular HealthLipid metabolism and disorders

Biological, clinical and population relevance of 95 loci for blood lipids

Open access
Teslovich, Tanya M., Musunuru, Kiran, Smith, Albert V., Edmondson, Andrew C., Stylianou, Ioannis M., Koseki, Masahiro, Pirruccello, James P., Ripatti, Samuli +201 more·2010·Nature

Abstract

Plasma concentrations of total cholesterol, low-density lipoprotein cholesterol, high-density lipoprotein cholesterol and triglycerides are among the most important risk factors for coronary artery disease (CAD) and are targets for therapeutic intervention. We screened the genome for common variants associated with plasma lipids in >100,000 individuals of European ancestry. Here we report 95 significantly associated loci (P < 5 x 10(-8)), with 59 showing genome-wide significant association with lipid traits for the first time. The newly reported associations include single nucleotide polymorphisms (SNPs) near known lipid regulators (for example, CYP7A1, NPC1L1 and SCARB1) as well as in scores of loci not previously implicated in lipoprotein metabolism. The 95 loci contribute not only to normal variation in lipid traits but also to extreme lipid phenotypes and have an impact on lipid traits in three non-European populations (East Asians, South Asians and African Americans). Our results identify several novel loci associated with plasma lipids that are also associated with CAD. Finally, we validated three of the novel genes-GALNT2, PPP1R3B and TTC39B-with experiments in mouse models. Taken together, our findings provide the foundation to develop a broader biological understanding of lipoprotein metabolism and to identify new therapeutic opportunities for the prevention of CAD.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/nature09270

Cites

20 of 20 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • IDOL is a potential therapeutic target.

    “thus implicating IDOL as a potential therapeutic target (35)(36)(37).”

    From Distinct Functional Domains Contribute to Degradation of the Low Density Lipoprotein Receptor (LDLR) by the E3 Ubiquitin Ligase Inducible Degrader of the LDLR (IDOL) (2011) · cites this paper as [36]

    The Biological Relevance of GWAS Loci section identifies MYLIP as Idol and reports that it regulates cellular LDL receptor levels. The New Biological, Clinical, and Genetic Insights section names MYLIP among clinically important genes and points to potential new therapeutic opportunities, but does not specifically designate Idol as a therapeutic target. No page numbers are available in our copy. (LLM, conf=0.82)

    Experimental — accuracy not yet measured
  • GWASs in cohorts of mixed European descent have identified noncoding SNPs in the region of the MYLIP gene that are associated with LDL-C levels.

    “Recent genome-wide association studies (GWASs) in cohorts of mixed European descent have identified noncoding SNPs in the region of the MYLIP gene that are associated with LDL-C levels (6)(7)(8), thus demonstrating for the first time genetic association between the MYLIP gene and lipid levels in humans.”

    From The N342S MYLIP polymorphism is associated with high total cholesterol and increased LDL receptor degradation in humans (2011) · cites this paper as [6]

    The Genome-Wide Association Mapping section describes lipid GWASs in more than 100,000 people of European descent, and the New Biological, Clinical, and Genetic Insights section identifies MYLIP among genes at newly associated lipid loci and calls it a regulator of LDL-C (page not available in our copy). Our copy does not establish that the SNPs in the MYLIP region were noncoding, so that specific part of the claim is unsupported. (LLM, conf=0.83)

    Experimental — accuracy not yet measured
  • In recent GWASs and a GWAS meta-analysis of populations of mixed European descent, there were 3 independent (r2 < 0.3) genome-wide significant signals in the MYLIP region, none of which resides within the MYLIP gene.

    “In recent GWASs and a GWAS meta-analysis of populations of mixed European descent (6-8), there were 3 independent (r 2 < 0.3) genome-wide significant signals in the MYLIP region, none of which resides within the MYLIP gene.”

    From The N342S MYLIP polymorphism is associated with high total cholesterol and increased LDL receptor degradation in humans (2011) · cites this paper as [6]

    The Genome-Wide Association Mapping section (page unavailable) reports a meta-analysis of 46 lipid GWASs in people of European descent, and the Biological Relevance section identifies MYLIP as a gene implicated by the study. Our copy does not establish that the MYLIP region had three independent signals with r² < 0.3 or that none lay within the gene. (LLM, conf=0.84)

    Experimental — accuracy not yet measured
  • In the large GWAS meta-analysis of cohorts of mixed European descent, rs9370867 was associated with LDL-C levels for the same A risk allele (MAF 50%) as in Mexicans (P = 5.8 × 10 -06).

    “We also examined the direct association evidence for rs9370867 in the large GWAS meta-analysis of cohorts of mixed European descent (6): rs9370867 was associated with LDL-C levels for the same A risk allele (MAF 50%) as in Mexicans (P = 5.8 × 10 -06 ; Figure 2A).”

    From The N342S MYLIP polymorphism is associated with high total cholesterol and increased LDL receptor degradation in humans (2011) · cites this paper as [6]

    The “Genome-Wide Association Mapping in >100,000 Individuals” section describes a meta-analysis of 46 lipid GWASs in people of European descent, including LDL-C association testing. Our copy does not report rs9370867’s A allele, its 50% minor allele frequency, or the stated P value; a search for the SNP found no matching passage. Page numbers were not provided. (LLM, conf=0.84)

    Experimental — accuracy not yet measured
  • Another GWAS signal was detected by the SNPs rs2327951 and rs2142672 that mapped and tagged variants 48-49 kb downstream from MYLIP.

    “Another GWAS signal was detected by the SNPs rs2327951 (6) and rs2142672 (8) that mapped and tagged variants 48-49 kb downstream from MYLIP.”

    From The N342S MYLIP polymorphism is associated with high total cholesterol and increased LDL receptor degradation in humans (2011) · cites this paper as [6]

    The Biological Relevance of GWAS Loci section identifies MYLIP as a gene implicated by this GWAS, supporting a lipid-associated signal near MYLIP. However, searches of our copy for rs2327951, rs2142672, and the claimed 48–49 kb downstream location found no passage supporting those specific SNPs or distances. (LLM, conf=0.80)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Cited by

Sorted by citations

Authors
Teslovich, T. M., Musunuru, K., Smith, A. V., Edmondson, A. C., Stylianou, I. M., Koseki, M., Pirruccello, J. P., Ripatti, S., Chasman, D. I., Willer, C. J., Johansen, C. T., Fouchier, S. W., Isaacs, A., Peloso, G. M., Barbalic, M., Ricketts, S. L., Bis, J. C., Aulchenko, Y. S., Thorleifsson, G., Feitosa, M. F., Chambers, J., Orho-Melander, M., Melander, O., Johnson, T., Li, X., Guo, X., Li, M., Shin Cho, Y., Jin Go, M., Jin Kim, Y., Lee, J.-Y., Park, T., Kim, K., Sim, X., Twee-Hee Ong, R., Croteau-Chonka, D. C., Lange, L. A., Smith, J. D., Song, K., Hua Zhao, J., Yuan, X., Luan, J., Lamina, C., Ziegler, A., Zhang, W., Zee, R. Y. L., Wright, A. F., Witteman, J. C. M., Wilson, J. F., Willemsen, G., Wichmann, H.-E., Whitfield, J. B., Waterworth, D. M., Wareham, N. J., Waeber, G., Vollenweider, P., Voight, B. F., Vitart, V., Uitterlinden, A. G., Uda, M., Tuomilehto, J., Thompson, J. R., Tanaka, T., Surakka, I., Stringham, H. M., Spector, T. D., Soranzo, N., Smit, J. H., Sinisalo, J., Silander, K., Sijbrands, E. J. G., Scuteri, A., Scott, J., Schlessinger, D., Sanna, S., Salomaa, V., Saharinen, J., Sabatti, C., Ruokonen, A., Rudan, I., Rose, L. M., Roberts, R., Rieder, M., Psaty, B. M., Pramstaller, P. P., Pichler, I., Perola, M., Penninx, B. W. J. H., Pedersen, N. L., Pattaro, C., Parker, A. N., Pare, G., Oostra, B. A., O’Donnell, C. J., Nieminen, M. S., Nickerson, D. A., Montgomery, G. W., Meitinger, T., McPherson, R., McCarthy, M. I., McArdle, W., Masson, D., Martin, N. G., Marroni, F., Mangino, M., Magnusson, P. K. E., Lucas, G., Luben, R., Loos, R. J. F., Lokki, M.-L., Lettre, G., Langenberg, C., Launer, L. J., Lakatta, E. G., Laaksonen, R., Kyvik, K. O., Kronenberg, F., König, I. R., Khaw, K.-T., Kaprio, J., Kaplan, L. M., Johansson, Å., Jarvelin, M.-R., Cecile J. W. Janssens, A., Ingelsson, E., Igl, W., Kees Hovingh, G., Hottenga, J.-J., Hofman, A., Hicks, A. A., Hengstenberg, C., Heid, I. M., Hayward, C., Havulinna, A. S., Hastie, N. D., Harris, T. B., Haritunians, T., Hall, A. S., Gyllensten, U., Guiducci, C., Groop, L. C., Gonzalez, E., Gieger, C., Freimer, N. B., Ferrucci, L., Erdmann, J., Elliott, P., Ejebe, K. G., Döring, A., Dominiczak, A. F., Demissie, S., Deloukas, P., de Geus, E. J. C., de Faire, U., Crawford, G., Collins, F. S., Chen, Y.-D. I., Caulfield, M. J., Campbell, H., Burtt, N. P., Bonnycastle, L. L., Boomsma, D. I., Boekholdt, S. M., Bergman, R. N., Barroso, I., Bandinelli, S., Ballantyne, C. M., Assimes, T. L., Quertermous, T., Altshuler, D., Seielstad, M., Wong, T. Y., Tai, E.-S., Feranil, A. B., Kuzawa, C. W., Adair, L. S., Taylor Jr, H. A., Borecki, I. B., Gabriel, S. B., Wilson, J. G., Holm, H., Thorsteinsdottir, U., Gudnason, V., Krauss, R. M., Mohlke, K. L., Ordovas, J. M., Munroe, P. B., Kooner, J. S., Tall, A. R., Hegele, R. A., Kastelein, J. J. P., Schadt, E. E., Rotter, J. I., Boerwinkle, E., Strachan, D. P., Mooser, V., Stefansson, K., Reilly, M. P., Samani, N. J., Schunkert, H., Cupples, L. A., Sandhu, M. S., Ridker, P. M., Rader, D. J., van Duijn, C. M., Peltonen, L., Abecasis, G. R., Boehnke, M., & Kathiresan, S.
Affiliations
  • University of Michigan (US)
  • Broad Institute (US)
  • University of Iceland (IS)
  • University of Pennsylvania (US)
  • Columbia University (US)
  • University of Helsinki (FI)
  • Brigham and Women's Hospital (US)
  • Western University (CA)
  • Amsterdam UMC Location University of Amsterdam (NL)
  • Erasmus MC (NL)
  • Boston University (US)
  • University of Cambridge (GB)
  • University of Washington (US)
  • Washington University in St. Louis (US)
  • Imperial College London (GB)
  • Lund University (SE)
  • Queen Mary University of London (GB)
  • Cedars-Sinai Medical Center (US)
  • Korea National Institute of Health (KR)
  • Seoul National University (KR)
  • Sookmyung Women's University (KR)
  • National University of Singapore (SG)
  • University of North Carolina at Chapel Hill (US)
  • GlaxoSmithKline (United States) (US)
  • Addenbrooke's Hospital (GB)
  • Innsbruck Medical University (AT)
  • University of Lübeck (DE)
  • Institute of Genetics and Cancer (GB)
  • University of Edinburgh (GB)
  • Vrije Universiteit Amsterdam (NL)
  • Helmholtz Munich (DE)
  • QIMR Berghofer Medical Research Institute (AU)
  • Centre Hospitalier Universitaire Vaudois (CH)
  • Institute of Genetic and Biomedical Research (IT)
  • Finnish Institute for Health and Welfare (FI)
  • University of Leicester (GB)
  • National Institutes of Health (US)
  • King's College London (GB)
  • Amsterdam Neuroscience (NL)
  • Helsinki University Hospital (FI)
  • Istituti di Ricovero e Cura a Carattere Scientifico (IT)
  • Hammersmith Hospital (GB)
  • National Institute on Aging (US)
  • Stanford University (US)
  • University of Oulu (FI)
  • University of Ottawa (CA)
  • Group Health Cooperative (US)
  • Eurac Research (IT)
  • Karolinska Institutet (SE)
  • Amgen (United States) (US)
  • Harvard University (US)
  • TUM Klinikum (DE)
  • Centre for Human Genetics (GB)
  • University of Bristol (GB)
  • Istituto di Genomica Applicata (IT)
  • Municipal Institute for Medical Research (ES)
  • Montreal Heart Institute (CA)
  • Tampere University Hospital (FI)
  • University of Southern Denmark (DK)
  • Massachusetts General Hospital (US)
  • Uppsala University (SE)
  • University of Regensburg (DE)
  • University of Leeds (GB)
  • University of California, Los Angeles (US)
  • University of Glasgow (GB)
  • University of Southern California (US)
  • Wellcome Sanger Institute (GB)
  • Azienda Sanitaria di Firenze (IT)
  • Baylor College of Medicine (US)
  • Stanford Medicine (US)
  • Genome Institute of Singapore (SG)
  • University of San Carlos (PH)
  • Northwestern University (US)
  • University of Mississippi Medical Center (US)
  • Sage Bionetworks (US)
  • The University of Texas Health Science Center at Houston (US)
  • St George's, University of London (GB)
Corresponding author
Kathiresan, Sekar
ORCID
Venue
Nature
Published
2010-08
Volume
466
Issue
7307
Pages
707-713
ISSN
  • 0028-0836 (ISSN-L)
  • 1476-4687
OpenAlex
W2115801316
Cited by
3,487
References
20
Citations by year
2026: 69 · 2025: 82 · 2024: 111 · 2023: 151 · 2022: 180 · 2021: 178 · 2020: 170 · 2019: 214 · 2018: 257 · 2017: 249 · 2016: 272 · 2015: 322 · 2014: 325 · 2013: 297 · 2012: 308
FWCI
126.99
Type
journal article
Language
en
Open access
Locations
  • Nature (publishedVersion)
  • PubMed (publishedVersion)
  • Amsterdam UMC (VU Amsterdam) - Institutional Repository (publishedVersion)
  • EUR Research Repository (Erasmus University Rotterdam) (publishedVersion)
  • Bristol Research (University of Bristol) (publishedVersion)
  • VU Research Portal (publishedVersion, other-oa)
  • St George's Online Research Archive (St George's University of London) (acceptedVersion)
  • PubMed Central (acceptedVersion)
  • Carolina Digital Repository (University of North Carolina at Chapel Hill) (submittedVersion)
  • National University of Singapore (submittedVersion)
  • Data Archiving and Networked Services (DANS) (submittedVersion)
  • EUR Research Repository (Erasmus University Rotterdam) (submittedVersion)
  • RePub (Erasmus University Rotterdam) (submittedVersion, other-oa)
  • RePEc: Research Papers in Economics (submittedVersion)
  • Institutional Research Information System (University of Udine) (submittedVersion)
  • Digital Academic REpository of VU University Amsterdam (Vrije Universiteit Amsterdam) (submittedVersion)
  • ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (submittedVersion)
  • UCL Discovery (University College London) (submittedVersion)
  • eScholarship (California Digital Library) (submittedVersion)
  • UNICA IRIS Institutional Research Information System (University of Cagliari) (submittedVersion)
  • IRIS (submittedVersion)
  • UnissResearch (Università degli Studi di Sassari) (submittedVersion)
  • Minerva Access (University of Melbourne) (submittedVersion)
  • Research Portal (King's College London) (submittedVersion)
  • Leicester Research Archive (University of Leicester) (submittedVersion)
  • Lund University Publications (Lund University) (submittedVersion)
  • mediaTUM (Technical University of Munich) (submittedVersion)
  • Pure Amsterdam UMC (submittedVersion)
  • Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, other-oa)
  • RePub (Erasmus University Rotterdam) (submittedVersion)
  • University of Southern Denmark Research Portal (University of Southern Denmark) (submittedVersion)
  • SERVAL (Université de Lausanne) (submittedVersion)
  • Spiral (Imperial College London) (submittedVersion)
  • Open Research (University of Surrey) (submittedVersion)
  • STM:n Hallinnonalan avoin julkaisuarkisto (Julkari) (submittedVersion)
  • Data Archiving and Networked Services (DANS) (submittedVersion, other-oa)
  • UNC Libraries
Funders
  • GlaxoSmithKline
  • Wellcome Trust (068545/Z/02), 077016/Z/05/Z, 079895, ­076113/B/04/Z)
  • British Heart Foundation (PG/08/094/26019, SP/08/005/25115, PG/02/128, RG/07/005/23633, PG/08/094)
  • National Institutes of Health (2r24hd050924-06, n01hc085082-026, n01hc085081-021, 5r01dk068336-03, n01hc045133-001, n01ag12100-57-0-2, n01hc085079-024, n01hc015103-009, n01hc085084-005, n01hc55021-47-0-1, n01hc085085-011, n01hc085083-027, n01hc55020-39-0-0, n01hc085080-026, n01hc55016-37-0-0, n01hc055022-024, n01hg065403-000, n01hc085086-022, 5r01hl087700-03, n01hc55019-35-0-1, 6r01hl087679-03, 5k99hl094535-02, n01hc55018-38-0-1, n01hc25195-41-0-1, 5r01hl088215-04, 5p20rr020649-03, 6u54rr020278-06, n01hc55222-0-0-0, n01hc075150-004, n01hc035129-010, n01hc55015-48-0-1)
  • U.S. Public Health Service (HHSN 268200625226C)
  • Medical Research Council (MC_qA137934)
  • National Institute on Aging (N01-AG12100)
  • National Heart, Lung, and Blood Institute (N01-HC-85081, N01HC85085, R01HL080467, N01-HC55022, N01HC-85083, N01-HC-55018, 5R01 HL087679-02, N01HC15103, 5R01 HL08770003, N01 HC 55020, N01‐HC25195, N01 HC 55019, RC2HL101864, N01HC85082, N01HC‐75150, N01 HC85086, R01HL087676, R01HL087652, R01HL089309, N01HC85080, N02- HL-64278, N01 HC55222, U01HL069757, N01‐HC‐45133, ­N01-HC55016, R01HL087641, R01HL059367, R01HL054776, U01HL080295, 5-R01-HL-08821502, K99HL098364, R01HL085144, K23HL004381, K99-HL094535, N01‐HC‐55015, RC1HL099634, N01-HC55021, RC1HL099793, R01HL089650, RC2HL102419, T32HL007208, R01HL086694, N01-HC85079, ­N01-HC85084, N01HC35129)
  • National Human Genome Research Institute (Z01HG000024, U01HG004402, N01 HG-65403, T32HG000040)
  • National Cancer Institute (R01CA047988)
  • National Institute of General Medical Sciences (T32GM007092)
  • Fogarty International Center (R01TW005596)
  • National Institute of Diabetes and Digestive and Kidney Diseases (5R01 DK06833603, R01DK078150, R01DK072193, U01DK062370, R01DK075681, U01DK062418, DK-062370, P30DK063491, P30DK056350)
  • National Institute of Environmental Health Sciences (P30ES010126)
  • National Center for Research Resources (U54-RR020278, UL1RR025005, RR20649, M01RR000425)
  • Eunice Kennedy Shriver National Institute of Child Health and Human Development (R24 HD-050924)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
  • Health Sciences › Medicine › Surgery › Lipoproteins and Cardiovascular Health
  • Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Lipid metabolism and disorders
Keywords
plasma lipids, genetic association, cholesterol, LDL cholesterol, HDL cholesterol, triglycerides, coronary artery disease, lipoprotein metabolism, single nucleotide polymorphisms, CYP7A1, NPC1L1, scavenger receptor class B type I, GALNT2, PPP1R3B, cross-population validation, East Asians, South Asians, African Americans, mouse model
MeSH terms
Polypeptide N-acetylgalactosaminyltransferase, Animals, Black or African American, Coronary Artery Disease, Europe, Female, Genotype, Humans, Lipids, Cholesterol, HDL, Cholesterol, LDL, Liver, Male, Phenotype, Triglycerides, Reproducibility of Results, N-Acetylgalactosaminyltransferases, Polymorphism, Single Nucleotide, White People, Asian People, Lipid Metabolism, Mice, Protein Phosphatase 1, Genome-Wide Association Study, Genetic Loci

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review