The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Insights into the bioluminescence systems of three sea pens (Cnidaria: Anthozoa): from de novo transcriptome analyses to biochemical assays
Open accessPublished version of a preprint
Abstract
Bioluminescence is the production of visible light by living organisms. It occurs through the oxidation of luciferin substrates catalysed by luciferase enzymes. Auxiliary proteins, such as fluorescent proteins and luciferin-binding proteins, can modify the light emitted wavelength or stabilize reactive luciferin molecules, respectively. Additionally, calcium ions are crucial for the luminescence across various species. Despite the large phylogenetic distribution of bioluminescent organisms, only a few systems have been comprehensively studied. Notably, cnidarian species of the Renilla genus utilize a coelenterazine-dependent luciferase, a calcium-dependent coelenterazine-binding protein and a green fluorescent protein. We investigated the bioluminescence of three sea pen species: Pennatula phosphorea , Anthoptilum murrayi and Funiculina quadrangularis (Pennatuloidea, Anthozoa). Their light-emission spectra reveal peaks at 510, 513 and 485 nm, respectively. A coelenterazine-based reaction was demonstrated in all three species. Using transcriptome analyses, we identified transcripts coding for luciferases, green fluorescent proteins and coelenterazine-binding proteins for P. phosphorea and A. murrayi . Immunodetection confirmed the expression of luciferase in P. phosphorea and F. quadrangularis . We also expressed recombinant luciferase of A. murrayi , confirming its activity. We highlighted the role of calcium ions in bioluminescence, possibly associated with the mechanism of substrate release at the level of coelenterazine-binding proteins. The study proposes a model for anthozoan bioluminescence, offering new avenues for future ecological and functional research on these luminous organisms.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Accurate structure prediction of biomolecular interactions with AlphaFold 3
Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., et al. (2024) · Nature · doi:10.1038/s41586-024-07487-w · Cited by 15,861
Schnitzler, C. E., Pang, K., Powers, M. L., Reitzel, A. M., Ryan, J. F., Simmons, D., Tada, T., Park, M., Gupta, J., Brooks, S. Y., et al. (2012) · BMC Biology · doi:10.1186/1741-7007-10-107 · Cited by 132
Bioluminescence: Living Lights, Lights for Living
Wilson, T., & Hastings, J. W. (2012) · doi:10.4159/harvard.9780674068025 · Cited by 64
Flagged first, then by citations
Research works printed but not linked: 93
- 10.1142/11180 · DOI
- 10.1146/annurev-marine-120308-081028 · DOI
- 10.3389/fmars.2021.673620 · DOI
- 10.1007/s00294-019-00951-5 · DOI
- 10.1016/0378-1119(95)00676-1 · DOI
- 10.4159/harvard.9780674068025.c2 · DOI
- 10.1039/C6CS00296J · DOI
- 10.1007/s42995-024-00250-0 · DOI
- 10.1016/0006-3002(60)90797-6 · DOI
- 10.1021/bi00620a014 · DOI
- 10.1073/pnas.88.10.4438 · DOI
- 10.1038/s41929-022-00895-z · DOI
- 10.1016/S0040-4039(01)83046-X · DOI
- 10.1016/j.jmb.2007.09.078 · DOI
- 10.1007/s00227-020-03706-w · DOI
- 10.1098/rspb.2023.2626 · DOI
- 10.1002/jcp.1040810218 · DOI
- 10.1098/rsob.160300 · DOI
- 10.1038/s41598-020-73446-w · DOI
- Lau ES et al. 2024 Functional characterization of luciferase in a brittle star indicates parallel evolution influenced by genomic availability of haloalkane dehalogenase. BioRxiv. (doi:10.1101/2024.10.14.618359) · DOI
- 10.1021/bi00703a602 · DOI
- 10.1016/S0021-9258(17)37873-0 · DOI
- 10.1016/0014-5793(90)81029-N · DOI
- 10.1016/j.pep.2006.07.028 · DOI
- 10.1039/b713109g · DOI
- 10.1002/bio.2497 · DOI
- 10.1016/0005-2728(78)90005-1 · DOI
- 10.1016/S0021-9258(17)37872-9 · DOI
- 10.1002/prot.22173 · DOI
- 10.1242/jeb.32.2.299 · DOI
- 10.1098/rspb.1956.0005 · DOI
- 10.1016/0005-2728(73)90068-6 · DOI
- 10.1080/10236248009386969 · DOI
- 10.1016/0040-8166(88)90017-1 · DOI
- 10.1002/jez.1402230103 · DOI
- 10.3390/life13091798 · DOI
- 10.1007/978-1-4757-9724-4_65 · DOI
- 10.1371/journal.pone.0152988 · DOI
- 10.1371/journal.pone.0209767 · DOI
- 10.3389/fmars.2021.627045 · DOI
- 10.1093/nar/gkp1137 · DOI
- 10.1038/nbt.1883 · DOI
- 10.1093/bioinformatics/btg034 · DOI
- 10.1093/icb/icw117 · DOI
- 10.1016/S0022-2836(05)80360-2 · DOI · Paper page
- 10.1038/nmeth.3176 · DOI · Paper page
- 10.1093/bioinformatics/bti610 · DOI
- 10.1093/nar/gki442 · DOI
- 10.1038/nprot.2013.084 · DOI · Paper page
- 10.1093/bioinformatics/bts199 · DOI
- 10.1110/ps.073355508 · DOI
- McFadden CS, Ofwegen LP, Quattrini AM. 2022 Revisionary systematics of Octocorallia (Cnidaria: Anthozoa) guided by phylogenomics. Bull. Soc. Syst. Biol. 1, 8735. (doi:10.18061/bssb.v1i3.8735) · DOI
- 10.1073/pnas.062552299 · DOI
- 10.1371/journal.pone.0002680 · DOI
- 10.1016/j.gene.2009.07.003 · DOI
- 10.1093/molbev/msh079 · DOI
- 10.1093/bioinformatics/btp348 · DOI
- 10.1093/molbev/msu300 · DOI · Paper page
- 10.1093/bioinformatics/14.9.817 · DOI · Paper page
- 10.1017/S0025315400005610 · DOI
- 10.1016/j.enzmictec.2016.09.009 · DOI
- 10.1016/j.ijbiomac.2018.05.160 · DOI
- 10.1242/jeb.218719 · DOI
- 10.3389/fmars.2023.1136138 · DOI
- 10.1093/protein/gzl023 · DOI
- 10.1021/jacs.4c00963 · DOI
- 10.1111/j.1751-1097.1995.tb08713.x · DOI
- 10.1016/j.bbrc.2008.07.166 · DOI
- 10.1039/c6pp00050a · DOI
- 10.1007/s00253-019-09939-0 · DOI
- 10.1039/b716535h · DOI
- 10.1093/plankt/13.4.885 · DOI
- 10.1017/S0025315400015277 · DOI
- 10.1016/j.bbrc.2009.10.028 · DOI
- 10.1016/j.isci.2020.101859 · DOI
- 10.1371/journal.pone.0128742 · DOI
- 10.1073/pnas.201329798 · DOI
- 10.1007/978-94-011-3240-4_80 · DOI
- 10.1038/s41598-024-64010-x · DOI
- Herring PJ. 1978 Bioluminescence of invertebrates other than insects. In Bioluminescence in action (ed PJ Herring), pp. 199–240. London, UK: Academic Press.
- 10.1016/S0014-5793(00)01963-3 · DOI
- 10.1146/annurev.ne.15.030192.000511 · DOI
- 10.1016/B978-0-12-571148-7.50014-2 · DOI
- 10.1126/science.1071550 · DOI
- 10.1152/ajpheart.1988.254.3.H401 · DOI
- 10.1016/0166-2236(94)90157-0 · DOI
- 10.1124/pr.55.4.3 · DOI
- 10.1124/pr.58.4.11 · DOI
- 10.1016/j.tibtech.2004.03.011 · DOI
- 10.5772/intechopen.85313 · DOI
- 10.1016/j.copbio.2004.12.006 · DOI · Paper page
- 10.3390/ijms24032144 · DOI
- Duchatelet L Galeazzo GA Coubris C Bridoux L Rezsohazy R Melo MRS et al. 2025 Supplementary material from: Insights into the bioluminescence systems of three sea pens (Cnidaria: Anthozoa): from de novo transcriptome analyses to biochemical assays. Figshare. (doi:10.6084/m9.figshare.c.7735482) · DOI
Metadata
- Authors
- Duchatelet, L., Galeazzo, G. A., Coubris, C., Bridoux, L., Rezsohazy, R., Melo, M. R. S., Marek, M., Amaral, D. T., Dupont, S., Garbuglio de Oliveira, A., & Delroisse, J.
- Affiliations
- UCLouvain (BE)
- Universidade de São Paulo (BR)
- Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain
- Departamento de Oceanografia Biológica, Universidade de São Paulo
- Masaryk University (CZ)
- Universidade Federal do ABC (BR)
- International Atomic Energy Agency (AT)
- Department of Chemistry and Biochemistry, Yeshiva University
- University of Mons (BE)
- Corresponding author
- Duchatelet, Laurent
- ORCID
- Venue
- Open Biology
- Publisher
- The Royal Society
- Published
- 2025-04
- Volume
- 15
- Issue
- 4
- Pages
- 240262-240262
- ISSN
- 2046-2441 (ISSN-L)
- PMC
- PMC12040472
- OpenAlex
- W4409912732
- Cited by
- 6
- References
- 4
- Citations by year
- 2026: 3 · 2025: 2
- FWCI
- 1.50
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Open Biology (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- ORBi UMONS (submittedVersion, other-oa)
- Digital Access to Libraries (submittedVersion, other-oa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Open Repository and Bibliography (University of Liège) (submittedVersion, cc-by)
- Funders
- Yeshiva University Start-up Fund
- F.R.S.-FNRS
- Fundação de Amparo à Pesquisa do Estado de São Paulo
- Czech Science Foundation
- European Union’s Horizon 2020 research and innovation program
- Czech Ministry of Education, Youth and Sports
- Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › bioluminescence and chemiluminescence research
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Marine Invertebrate Physiology and Ecology
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Keywords
- bioluminescence, sea pens, Funiculina quadrangularis, Anthozoa, luciferase, coelenterazine, green fluorescent protein, calcium regulation, emission spectra, de novo transcriptome
- MeSH terms
- Animals, Imidazoles, Luciferases, Luminescent Measurements, Luminescent Proteins, Phylogeny, Pyrazines, Gene Expression Profiling, Anthozoa, Luminescence, Green Fluorescent Proteins, Transcriptome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review