Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade
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Although the sister-group relationship between Cetacea and Artiodactyla is widely accepted, the actual artiodactyl group which is closest to Cetacea has not been conclusively identified. In the present study, we have sequenced the complete mitochondrial genome of the hippopotamus, Hippopotamus amphibius, and included it in phylogenetic analyses together with 15 other placental mammals. These analyses separated the hippopotamus from the other suiform included, the pig, and identified the hippopotamus as the artiodactyl sister group of the cetaceans, thereby making both. Artiodactyla and the suborder. Suiformes paraphyletic. The divergence between the hippopotamid and cetacean lineages was calculated using this molecular data and was estimated at ca. 54 Ma BP.
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The Cetacea and the Hippopotamidae are believed to share a common ancestry, with initial divergence estimated around 54 million years ago.
“The Cetacea and the Hippopotamidae are believed to share a common ancestry, with initial divergence estimated around 54 million years ago (Ursing and Arnason 1998).”
From Choeropsis liberiensis (Artiodactyla: Hippopotamidae) (2019) · cites this paper as Ursing and Arnason 1998
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Dating of the human–ape splitting by a molecular clock of mitochondrial DNA.
Hasegawa, M., Kishino, H., & Yano, T.-A. (1985) · Journal of Molecular Evolution · doi:10.1007/bf02101694 · Cited by 8,687 · see citing works
Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies
Strimmer, K., & von Haeseler, A. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025664 · Cited by 2,531 · see citing works
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
Shimamura, M., Yasue, H., Ohshima, K., Abe, H., Kato, H., Kishiro, T., Goto, M., Munechika, I., & Okada, N. (1997) · Nature · doi:10.1038/41759 · Cited by 399 · cited 2× · see citing works
“B (1998) 265, 2251-2255 Received 7 August 1998 Accepted 3 September 1998 positions of SINE (short interspersed elements) insertion sites (Shimamura et al. 1997).”
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Research works printed but not linked: 30
- Adachi J., Hasegawa M. Model of amino acid substitution in proteins encoded by mitochondrial DNA. J Mol Evol. 1996 Apr;42(4):459–468. doi: 10.1007/BF02498640. [DOI] [PubMed] [Google Scholar] · DOI
- Anderson S., de Bruijn M. H., Coulson A. R., Eperon I. C., Sanger F., Young I. G. Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome. J Mol Biol. 1982 Apr 25;156(4):683–717. doi: 10.1016/0022-2836(82)90137-1. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
- Arnason U., Gullberg A. Comparison between the complete mtDNA sequences of the blue and the fin whale, two species that can hybridize in nature. J Mol Evol. 1993 Oct;37(4):312–322. doi: 10.1007/BF00178861. [DOI] [PubMed] [Google Scholar] · DOI
- Arnason U., Gullberg A. Cytochrome b nucleotide sequences and the identification of five primary lineages of extant cetaceans. Mol Biol Evol. 1996 Feb;13(2):407–417. doi: 10.1093/oxfordjournals.molbev.a025599. [DOI] [PubMed] [Google Scholar] · DOI
- Arnason U., Gullberg A., Janke A. Phylogenetic analyses of mitochondrial DNA suggest a sister group relationship between Xenarthra (Edentata) and Ferungulates. Mol Biol Evol. 1997 Jul;14(7):762–768. doi: 10.1093/oxfordjournals.molbev.a025816. [DOI] [PubMed] [Google Scholar] · DOI
- Arnason U., Gullberg A., Janke A., Xu X. Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs. J Mol Evol. 1996 Dec;43(6):650–661. doi: 10.1007/BF02202113. [DOI] [PubMed] [Google Scholar] · DOI
- Arnason U., Gullberg A., Johnsson E., Ledje C. The nucleotide sequence of the mitochondrial DNA molecule of the grey seal, Halichoerus grypus, and a comparison with mitochondrial sequences of other true seals. J Mol Evol. 1993 Oct;37(4):323–330. doi: 10.1007/BF00178862. [DOI] [PubMed] [Google Scholar] · DOI
- Arnason U., Gullberg A., Widegren B. Cetacean mitochondrial DNA control region: sequences of all extant baleen whales and two sperm whale species. Mol Biol Evol. 1993 Sep;10(5):960–970. doi: 10.1093/oxfordjournals.molbev.a040061. [DOI] [PubMed] [Google Scholar] · DOI
- Arnason U., Gullberg A., Widegren B. The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus. J Mol Evol. 1991 Dec;33(6):556–568. doi: 10.1007/BF02102808. [DOI] [PubMed] [Google Scholar] · DOI
- Arnason U., Johnsson E. The complete mitochondrial DNA sequence of the harbor seal, Phoca vitulina. J Mol Evol. 1992 Jun;34(6):493–505. doi: 10.1007/BF00160463. [DOI] [PubMed] [Google Scholar] · DOI
- Beintema J. J., Fitch W. M., Carsana A. Molecular evolution of pancreatic-type ribonucleases. Mol Biol Evol. 1986 May;3(3):262–275. doi: 10.1093/oxfordjournals.molbev.a040393. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
- Berta A. What is a whale? Science. 1994 Jan 14;263(5144):180–181. doi: 10.1126/science.263.5144.180. [DOI] [PubMed] [Google Scholar] · DOI
- Bibb M. J., Van Etten R. A., Wright C. T., Walberg M. W., Clayton D. A. Sequence and gene organization of mouse mitochondrial DNA. Cell. 1981 Oct;26(2 Pt 2):167–180. doi: 10.1016/0092-8674(81)90300-7. [DOI] [PubMed] [Google Scholar] · DOI
- Cao Y., Adachi J., Janke A., Päbo S., Hasegawa M. Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene. J Mol Evol. 1994 Nov;39(5):519–527. doi: 10.1007/BF00173421. [DOI] [PubMed] [Google Scholar] · DOI
- Gatesy J., Hayashi C., Cronin M. A., Arctander P. Evidence from milk casein genes that cetaceans are close relatives of hippopotamid artiodactyls. Mol Biol Evol. 1996 Sep;13(7):954–963. doi: 10.1093/oxfordjournals.molbev.a025663. [DOI] [PubMed] [Google Scholar] · DOI
- Gatesy J. More DNA support for a Cetacea/Hippopotamidae clade: the blood-clotting protein gene gamma-fibrinogen. Mol Biol Evol. 1997 May;14(5):537–543. doi: 10.1093/oxfordjournals.molbev.a025790. [DOI] [PubMed] [Google Scholar] · DOI
- Gingerich P. D., Wells N. A., Russell D. E., Shah S. M. Origin of whales in epicontinental remnant seas: new evidence from the early eocene of pakistan. Science. 1983 Apr 22;220(4595):403–406. doi: 10.1126/science.220.4595.403. [DOI] [PubMed] [Google Scholar] · DOI
- Graur D., Higgins D. G. Molecular evidence for the inclusion of cetaceans within the order Artiodactyla. Mol Biol Evol. 1994 May;11(3):357–364. doi: 10.1093/oxfordjournals.molbev.a040118. [DOI] [PubMed] [Google Scholar] · DOI
- Irwin D. M., Kocher T. D., Wilson A. C. Evolution of the cytochrome b gene of mammals. J Mol Evol. 1991 Feb;32(2):128–144. doi: 10.1007/BF02515385. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
- Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J Mol Evol. 1989 Aug;29(2):170–179. doi: 10.1007/BF02100115. [DOI] [PubMed] [Google Scholar] · DOI
- Lopez J. V., Cevario S., O'Brien S. J. Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome. Genomics. 1996 Apr 15;33(2):229–246. doi: 10.1006/geno.1996.0188. [DOI] [PubMed] [Google Scholar] · DOI
- Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987 Jul;4(4):406–425. doi: 10.1093/oxfordjournals.molbev.a040454. [DOI] [PubMed] [Google Scholar] · DOI
- Sanger F. Determination of nucleotide sequences in DNA. Science. 1981 Dec 11;214(4526):1205–1210. doi: 10.1126/science.7302589. [DOI] [PubMed] [Google Scholar] · DOI
- Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 1993 May;10(3):512–526. doi: 10.1093/oxfordjournals.molbev.a040023. [DOI] [PubMed] [Google Scholar] · DOI
- Thewissen J. G., Hussain S. T., Arif M. Fossil evidence for the origin of aquatic locomotion in archaeocete whales. Science. 1994 Jan 14;263(5144):210–212. doi: 10.1126/science.263.5144.210. [DOI] [PubMed] [Google Scholar] · DOI
- Ursing B. M., Arnason U. The complete mitochondrial DNA sequence of the pig (Sus scrofa). J Mol Evol. 1998 Sep;47(3):302–306. doi: 10.1007/pl00006388. [DOI] [PubMed] [Google Scholar] · DOI
- Xu X., Arnason U. The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region. Gene. 1994 Oct 21;148(2):357–362. doi: 10.1016/0378-1119(94)90713-7. [DOI] [PubMed] [Google Scholar] · DOI
- Xu X., Arnason U. The complete mitochondrial DNA sequence of the white rhinoceros, Ceratotherium simum, and comparison with the mtDNA sequence of the Indian rhinoceros, Rhinoceros unicornis. Mol Phylogenet Evol. 1997 Apr;7(2):189–194. doi: 10.1006/mpev.1996.0385. [DOI] [PubMed] [Google Scholar] · DOI
- Xu X., Gullberg A., Arnason U. The complete mitochondrial DNA (mtDNA) of the donkey and mtDNA comparisons among four closely related mammalian species-pairs. J Mol Evol. 1996 Nov;43(5):438–446. doi: 10.1007/BF02337515. [DOI] [PubMed] [Google Scholar] · DOI
- Xu X., Janke A., Arnason U. The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the Phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea). Mol Biol Evol. 1996 Nov;13(9):1167–1173. doi: 10.1093/oxfordjournals.molbev.a025681. [DOI] [PubMed] [Google Scholar] · DOI
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- Authors
- Ursing, B. M., & Arnason, U.
- Affiliations
- Lund University (SE)
- Department of Genetics, Division of Evolutionary Molecular Systematics, Lund University, Sölvegatan 29, S–223 62 Lund, Sweden
- Corresponding author
- Ursing, Björn M.
- Venue
- Proceedings of the Royal Society of London. Series B: Biological Sciences
- Publisher
- The Royal Society
- Published
- 1998-12-07
- Volume
- 265
- Issue
- 1412
- Pages
- 2251-2255
- ISSN
- 0080-4649 (ISSN-L)
- 0962-8452
- 1471-2954
- PMC
- PMC1689531
- OpenAlex
- W2018354418
- Cited by
- 116
- References
- 3
- Citations by year
- 2024: 2 · 2023: 4 · 2021: 3 · 2020: 2 · 2019: 1 · 2018: 1 · 2017: 1 · 2016: 5 · 2015: 4 · 2014: 6 · 2013: 2
- FWCI
- 10.89
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the Royal Society B Biological Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- European Commission
- University of Cape Town
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Plant Diversity and Evolution
- Keywords
- hippopotamus, mitochondrial genome, cetacean evolution, Artiodactyla, sister group relationships, divergence time estimation, paraphyly
- MeSH terms
- Animals, Artiodactyla, DNA, Mitochondrial, Phylogeny, Whales, Codon, Initiator
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