Cited by 37Genetic diversity and population structureAnimal Ecology and Behavior StudiesForensic and Genetic Research

Invader or resident? Ancient-DNA reveals rapid species turnover in New Zealand little penguins

Open access
Grosser, Stefanie, Rawlence, Nicolas J., Anderson, Christian N. K., Smith, Ian W. G., Scofield, R. Paul, Waters, Jonathan M.·2016·Proceedings of the Royal Society B: Biological Sciences

Abstract

The expansion of humans into previously unoccupied parts of the globe is thought to have driven the decline and extinction of numerous vertebrate species. In New Zealand, human settlement in the late thirteenth century AD led to the rapid demise of a distinctive vertebrate fauna, and also a number of 'turnover' events where extinct lineages were subsequently replaced by closely related taxa. The recent genetic detection of an Australian little penguin (Eudyptula novaehollandiae) in southeastern New Zealand may potentially represent an additional ‘cryptic’ invasion. Here we use ancient-DNA (aDNA) analysis and radiocarbon dating of pre-human, archaeological and historical Eudyptula remains to reveal that the arrival of E. novaehollandiae in New Zealand probably occurred between AD 1500 and 1900, following the anthropogenic decline of its sister taxon, the endemic Eudyptula minor. This rapid turnover event, revealed by aDNA, suggests that native species decline can be masked by invasive taxa, and highlights the potential for human-mediated biodiversity shifts.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1098/rspb.2015.2879

Cites

4 of 4 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • There are two congeneric taxa of little penguins; Eudyptula novaehollandiae occurring in Australia and south east New Zealand (Otago) and Eudyptula minor occurring in all other parts of New Zealand.

    “Research has suggested that there are two congeneric taxa of little penguins; Eudyptula novaehollandiae being little penguins occurring in Australia and south east New Zealand (Otago) and Eudyptula minor being little penguins occurring in all other parts of New Zealand (Peucker et al. 2009;Grosser et al. 2015Grosser et al. , 2016Grosser et al. , 2017)).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 38

  1. [1]1. Varela S, Lima-Ribeiro MS, Diniz-Filho JAF, Storch D. 2014 Differential effects of temperature change and human impact on European Late Quaternary mammalian extinctions. Glob. Change Biol. 21 , 1475-1481. (doi:10.1111/gcb.12763) · DOI
  2. [2]2. Prescott GW, Williams DR, Balmford A, Green RE, Manica A. 2012 Quantitative global analysis of the role of climate and people in explaining late Quaternary megafaunal extinctions. Proc. Natl Acad. Sci. USA 109 , 4527-4531. (doi:10.1073/pnas. 1113875109) · DOI
  3. [3]3. Martin PS. 1984 Prehistoric overkill: the global model. In Quaternary extinctions: a prehistoric revolution (eds PS Martin, RG Klein), pp. 354-403. Tucson, AZ: University of Arizona Press.
  4. [5]5. Barnosky AD, Koch PL, Feranec RS, Wing SL, Shabel AB. 2004 Assessing the causes of Late Pleistocene extinctions on the continents. Science 306 , 70-75. (doi:10.1126/science.1101476) · DOI · Paper page
  5. [8]8. Duncan RP, Boyer AG, Blackburn TM. 2013 Magnitude and variation of prehistoric bird extinctions in the Pacific. Proc. Natl Acad. Sci. USA 110 , 6436-6441. (doi:10.1073/pnas.1216511110) · DOI
  6. [10]10. Wilmshurst JM, Anderson AJ, Higham TFG, Worthy TH. 2008 Dating the late prehistoric dispersal of Polynesians to New Zealand using the commensal Pacific rat. Proc. Natl Acad. Sci. USA 105 , 7676-7680. (doi:10.1073/pnas.0801507105) · DOI · Paper page
  7. [11]11. Perry GLW, Wheeler AB, Wood JR, Wilmshurst JM. 2014 A high-precision chronology for the rapid extinction of New Zealand moa (Aves, Dinornithiformes). Q. Sci. Rev. 105 , 126-135. (doi:10.1016/j.quascirev.2014.09.025) · DOI
  8. [12]12. Perry GLW, Wilmshurst JM, McGlone MS, McWethy DB, Whitlock C. 2012 Explaining fire-driven landscape transformation during the Initial Burning Acknowledgements. We thank Auckland Museum, Canterbury Museum, Jill Hamel, Museum of New Zealand Te Papa Tongarewa, Otago Museum, and the University of Otago's Department of Archaeology and Anthropology, for providing samples. Ken Miller supplied maps for figures 1, 2 and S1. We also thank Lisa Matisoo-Smith for access to the Otago University Anatomy aDNA laboratory. - Period of New Zealand's prehistory. Glob. Change Biol. 18 , 1609-1621. (doi:10.1111/j.1365-2486. 2011.02631.x) · DOI
  9. [13]13. Allentoft ME, Heller R, Oskam CL, Lorenzen ED, Hale ML, Gilbert MTP, Jacomb C, Holdaway RN, Bunce M. 2014 Extinct New Zealand megafauna were not in decline before human colonization. Proc. Natl Acad. Sci. USA 111 , 4922-4927. (doi:10.1073/pnas. 1314972111) · DOI
  10. [15]15. Rawlence NJ, Perry GLW, Smith IWG, Scofield RP, Tennyson AJD, Matisoo-Smith EA, Boessenkool S, Austin JJ, Waters JM. 2015 Radiocarbon-dating and ancient DNA reveal rapid replacement of extinct prehistoric penguins. Q. Sci. Rev. 112 , 59-65. (doi:10.1016/j.quascirev.2015.01.011) · DOI
  11. [16]16. Smith IWG. In press. Regional and chronological variations in energy harvests from prehistoric fauna in New Zealand. In Oxford University Press Handbook of Zooarchaeology (eds U Albarella, H Russ, H Vickers, S Viner-Daniels). Oxford, UK: Oxford University Press.
  12. [17]17. McGlone MS, Anderson AJ, Holdaway RN. 1994 An ecological approach to the Polynesian settlement of New Zealand. In The origins of the first New Zealanders (ed. DG Sutton), pp. 136-163. Auckland, New Zealand: Auckland University Press.
  13. [18]18. Smith I. 2013 Pre-European Maori exploitation of marine resources in two New Zealand case study areas: species range and temporal change. J. R. Soc. NZ 43 , 1-37. (doi:10.1080/03036758. 2011.574709) · DOI
  14. [20]20. Holdaway RN, Worthy TH, Tennyson AJD. 2001 A working list of breeding bird species of the New Zealand region at first human contact. NZ J. Zool. 28 , 119-187. (doi:10.1080/03014223.2001. 9518262) · DOI
  15. [21]21. Boessenkool S, Austin JJ, Worthy TH, Scofield P, Cooper A, Seddon PJ, Waters JM. 2009 Relict or colonizer? Extinction and range expansion of penguins in southern New Zealand. Proc. R. Soc. B 276 , 815-821. (doi:10.1098/rspb.2008.1246) · DOI
  16. [22]22. Collins CJ et al. 2014 Extinction and recolonization of coastal megafauna following human arrival in New Zealand. Proc. R. Soc. B 281 , 20140097. (doi:10.1098/rspb.2014.0097) · DOI
  17. [23]23. Marchant S, Higgins PJ. 1990 Handbook of Australian, New Zealand & Antarctic Birds: ratites to ducks. Vol. 1 . South Melbourne, Victoria, Australia: Oxford University Press.
  18. [27]27. Knapp M, Clarke AC, Horsburgh KA, Matisoo-Smith EA. 2012 Setting the stage: building and working in an ancient DNA laboratory. Ann. Anat. 194 , 3-6. (doi:10.1016/j.aanat.2011.03.008) · DOI
  19. [29]29. Rohland N, Siedel H, Hofreiter M. 2010 A rapid column-based ancient DNA extraction method for increased sample throughput. Mol. Ecol. Resour. 10 , 677-683. (doi:10.1111/j.1755-0998.2009.02824.x) · DOI
  20. [30]30. Rohland N, Hofreiter M. 2007 Ancient DNA extraction from bones and teeth. Nat. Protoc. 2 , 1756-1762. (doi:10.1038/nprot.2007.247) · DOI
  21. [31]31. Rawlence NJ, Wood JR, Armstrong KN, Cooper A. 2009 DNA content and distribution in ancient feathers and potential to reconstruct the plumage of extinct avian taxa. Proc. R. Soc. B 276 , 3395-3402. (doi:10.1098/rspb.2009.0755) · DOI
  22. [32]32. Wood JR, Rawlence NJ, Rogers GM, Austin JJ, Worthy TH, Cooper A. 2008 Coprolite deposits reveal the diet and ecology of the extinct New Zealand megaherbivore moa (Aves, Dinornithiformes). Q. Sci. Rev. 27 , 2593-2602. (doi:10.1016/j.quascirev.2008. 09.019) · DOI
  23. [33]33. Brotherton P, Endicott P, Sanchez JJ, Beaumont M, Barnett R, Austin J, Cooper A. 2007 Novel highresolution characterization of ancient DNA reveals C . U-type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Res. 35 , 5717-5728. (doi:10.1093/nar/ gkm588) · DOI
  24. [40]40. Prost S, Anderson CNK. 2011 TempNet: a method to display statistical parsimony networks for heterochronous DNA sequence data. Methods Ecol. Evol. 2 , 663-667. (doi:10.1111/j.2041-210X.2011. 00129.x) · DOI
  25. [41]41. Excoffier L, Lischer HEL. 2010 Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10 , 564-567. (doi:10.1111/j.17550998.2010.02847.x) · DOI
  26. [45]45. Lambert DM, Ritchie PA, Millar CD, Holland B, Drummond AJ, Baroni C. 2002 Rates of evolution in ancient DNA from Adelie penguins. Science 295 , 2270-2273. (doi:10.1126/science. 1068105) · DOI · Paper page
  27. [46]46. Dann P, Cullen J. 1990 Survival, patterns of reproduction, and lifetime reproductive output in little blue penguins ( Eudyptula minor ) on Phillip Island, Victoria, Australia. In Penguin biology (eds L Davis, J Darby), pp. 63-84. San Diego, CA: Academic Press Inc.
  28. [47]47. Dann P, Cullen J, Jessop R. 1995 Cost of reproduction in little penguins. In The penguins: ecology and management (eds P Dann, I Norman, P Reilly), pp. 39 - 55. Surrey, NSW: Beatty and Sons Pty Ltd.
  29. [48]48. Lande R, Engen S, Seather B-E. 2003 Stochastic population dynamics in ecology and conservation . Oxford, UK: Oxford University Press.
  30. [49]49. Beaumont MA. 2010 Approximate Bayesian Computation in evolution and ecology. Annu. Rev. Ecol. Evol. Sci. 41 , 379-406. (doi:10.1146/annurevecolsys-102209-144621) · DOI
  31. [50]50. Nielsen R, Beaumont MA. 2009 Statistical inferences in phylogeography. Mol. Ecol. 18 , 1034-1047. (doi:10.1111/j.1365-294X.2008.04059.x) · DOI
  32. [51]51. Chan YL, Anderson CNK, Hadly EA. 2006 Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. PLoS Genet. 2 , 451-460. (doi:10.1371/journal.pgen. 0020059) · DOI
  33. [52]52. Ramakrishnan U, Hadly EA. 2009 Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Mol. Ecol. 18 , 1310-1330. (doi:10.1111/j. 1365-294X.2009.04092.x) · DOI
  34. [55]55. Koch PL, Barnosky AD. 2006 Late Quaternary extinctions: state of the debate. Annu. Rev. Ecol. Evol. Sci. 37 , 215-250. (doi:10.1146/annurev. ecolsys.34.011802.132415) · DOI
  35. [56]56. de Bruyn M, Hall BL, Chauke LF, Baroni C, Koch PL, Hoelzel AR. 2009 Rapid response of a marine mammal species to Holocene climate and habitat change. PLoS Genet. 5 , e1000554. (doi:10.1371/ journal.pgen.1000554)
  36. [59]59. Holdaway RN. 1999 Introduced predators and avifaunal extinction in New Zealand. In Extinctions in near time (ed. RDE MacPhee), pp. 189-238. Boston, MA: Springer.
  37. [61]61. Berlincourt M, Arnould JPY. 2014 At-sea associations in foraging little penguins. PLoS ONE 9 , e105065. (doi:10.1371/journal.pone.0105065) · DOI
  38. [62]62. Geller JB. 1999 Decline of a native mussel masked by sibling species invasion. Conserv. Biol. 13 , 661-664. (doi:10.1046/j.1523-1739.1999.97470.x) · DOI

Cited by

Sorted by citations

Authors
Grosser, S., Rawlence, N. J., Anderson, C. N. K., Smith, I. W. G., Scofield, R. P., & Waters, J. M.
Affiliations
  • Allan Wilson Centre (NZ)
  • Scripps Institution of Oceanography (US)
  • University of Otago (NZ)
  • Canterbury Museum (NZ)
Corresponding author
Grosser, Stefanie
Venue
Proceedings of the Royal Society B: Biological Sciences
Published
2016-02-10
Volume
283
Issue
1824
Pages
20152879
ISSN
  • 0080-4649 (ISSN-L)
  • 0962-8452
  • 1471-2954
OpenAlex
W2289682228
Cited by
37
References
4
Citations by year
2026: 1 · 2025: 3 · 2024: 1 · 2023: 4 · 2022: 5 · 2021: 2 · 2020: 3 · 2019: 3 · 2018: 6 · 2017: 6 · 2016: 3
FWCI
4.85
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the Royal Society B Biological Sciences (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
Innovative Research Group Project of the National Natural Science Foundation of China
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
  • Physical Sciences › Environmental Science › Ecology › Animal Ecology and Behavior Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
Keywords
little penguin, Eudyptula minor, species turnover, cryptic invasion, extinction, ancient DNA, radiocarbon dating, New Zealand
MeSH terms
Animals, DNA, Mitochondrial, Fossils, Molecular Sequence Data, New Zealand, Phylogeny, Sequence Analysis, DNA, Spheniscidae, Radiometric Dating, Animal Distribution

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review