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Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

Hug, Laura A., Maphosa, Farai, Leys, David, Löffler, Frank E., Smidt, Hauke, Edwards, Elizabeth A., Adrian, Lorenz·2013·Philosophical Transactions of the Royal Society B: Biological Sciences
DOI 10.1098/rstb.2012.0322
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Abstract

Organohalide respiration is an anaerobic bacterial respiratory process that uses halogenated hydrocarbons as terminal electron acceptors during electron transport-based energy conservation. This dechlorination process has triggered considerable interest for detoxification of anthropogenic groundwater contaminants. Organohalide-respiring bacteria have been identified from multiple bacterial phyla, and can be categorized as obligate and non-obligate organohalide respirers. The majority of the currently known organohalide-respiring bacteria carry multiple reductive dehalogenase genes. Analysis of a curated set of reductive dehalogenases reveals that sequence similarity and substrate specificity are generally not correlated, making functional prediction from sequence information difficult. In this article, an orthologue-based classification system for the reductive dehalogenases is proposed to aid integration of new sequencing data and to unify terminology.

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  • Oxygen-sensitive respiratory reductive dehalogenases use their substrates as terminal electron acceptors and are exported into the periplasm via a twin-arginine transport signal, where they form a complex with a membrane anchor protein.

    “The oxygen-sensitive respiratory reductive dehalogenases use these substrates as terminal electron acceptors and are exported into the periplasm via a twin-arginine transport signal, where they form a complex with a membrane anchor protein (86–88).”

    From Toward the development of a molecular toolkit for the microbial remediation of per-and polyfluoroalkyl substances (2024) · cites this paper as [87]

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Metadata

Authors
Hug, L. A., Maphosa, F., Leys, D., Löffler, F. E., Smidt, H., Edwards, E. A., & Adrian, L.
Affiliations
  • Department of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada
  • Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands
  • Faculty of Life Sciences, University of Manchester, Manchester, UK
  • Department of Microbiology and Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, TN, USA
  • Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON, Canada
  • Department of Isotope Biogeochemistry, Helmholtzzentrum für Umweltforschung – UFZ, Leipzig, Germany
Venue
Philosophical Transactions of the Royal Society B: Biological Sciences
Publisher
The Royal Society
Published
2013-04-19
Volume
368
Issue
1616
Pages
20120322
ISSN
  • 0962-8436
  • 1471-2970
DOI
10.1098/rstb.2012.0322
Cited by
294
References
1
Language
en
Licence
royalsociety.org/journals/ethics-policies/data-sharing-mining/ (tdm)

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