The DOI matches its Crossref record.
Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
Abstract
A novel mesophilic sulfur- and thiosulfate-oxidizing bacterium, strain 42BKT T, was isolated from the gas-bubbling sediment at the Iheya North hydrothermal system in the mid-Okinawa Trough, Japan. The isolate was a Gram-negative, non-motile and coccoid to oval-shaped bacterium. Growth was observed at 10–40 °C (optimum 28–30 °C) and in the pH range 5·0–9·0 (optimum 6·5–7·0). Strain 42BKT T grew chemolithoautotrophically with elemental sulfur or thiosulfate as a sole electron donor and oxygen (optimum 5 % in gas phase) or nitrate as an electron acceptor. The G+C content of the genomic DNA was 48·0 mol%. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the isolate belonged to the previously uncultivated Group F within the ε-Proteobacteria, which includes phylotypes of vent epibiont and environmental sequences from global deep-sea cold seep and hydrothermal vent fields. On the basis of the physiological and molecular characteristics of this isolate, the type species of a novel genus,Sulfurovum lithotrophicum gen. nov., sp. nov., is proposed. The type strain is 42BKT T(=ATCC BAA-797 T=JCM 12117 T).
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“The sulfur-oxidizing Sulfurovum lithotrophicum (Inagaki et al., 2004), also detected as dominant species in MS, represented 1.5% of the PG community, suggesting that it was inherent to PG and that oxidation-reduction of sulfurous compounds may occur in the extreme conditions prevailing in PG.”
From Microbial Diversity in Sulfate-Reducing Marine Sediment Enrichment Cultures Associated with Anaerobic Biotransformation of Coastal Stockpiled Phosphogypsum (Sfax, Tunisia) (2017) · cites this paper as Inagaki et al., 2004
Citations
Cites
No references could be resolved yet.
Research works printed but not linked: 22
- Alain, 2002, Caminibacter hydrogeniphilus gen. nov., sp. nov. a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent, Int J Syst Evol Microbiol, 52, 1317, 10.1099/00207713-52-4-1317 · DOI
- Balch, 1979, Methanogens: reevaluation of a unique biological group, Microbiol Rev, 43, 260, 10.1128/MMBR.43.2.260-296.1979 · DOI
- Baross, 1995, Isolation, growth and maintenance of hyperthermophiles, 15
- Campbell, 2001, Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents, Appl Environ Microbiol, 67, 4566, 10.1128/AEM.67.10.4566-4572.2001 · DOI
- Corre, 2001, Epsilon-proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge, FEMS Microbiol Lett, 205, 329
- Inagaki, 2002, Molecular phylogenetic analyses of reverse-transcribed bacterial rRNA obtained from deep-sea cold seep sediments, Environ Microbiol, 4, 277, 10.1046/j.1462-2920.2002.00294.x · DOI
- Inagaki, 2003, Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the mid-Okinawa Trough, Int J Syst Evol Microbiol, 53, 1801, 10.1099/ijs.0.02682-0 · DOI
- Kimura, 1980, A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, J Mol Evol, 16, 111, 10.1007/BF01731581 · DOI · Paper page
- Komagata, 1987, Lipid and cell-wall analysis in bacterial systematics, Methods Microbiol, 19, 161, 10.1016/S0580-9517(08)70410-0 · DOI
- Li, 1999, Microbial diversity in Nankai Trough sediments at a depth of 3,843m, J Oceanogr, 55, 635, 10.1023/A:1007897020042 · DOI
- Longnecker, 2001, Expansion of the geographic distribution of a novel lineage of epsilon-Proteobacteria to a hydrothermal vent site on the Southern East Pacific Rise, FEMS Microbiol Lett, 35, 287
- Miroshnichenko, 2002, Nautilia lithotrophica gen. nov., sp. nov. a thermophilic sulfur-reducing ε -proteobacterium isolated from a deep-sea hydrothermal vent, Int J Syst Evol Microbiol, 52, 1299, 10.1099/00207713-52-4-1299 · DOI
- Moyer, 1995, Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol, 61, 1555, 10.1128/AEM.61.4.1555-1562.1995 · DOI
- Polz, 1995, Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site, Proc Natl Acad Sci U S A, 92, 7232, 10.1073/pnas.92.16.7232 · DOI
- Porter, 1980, The use of DAPI for identifying and counting microflora, Limnol Oceanogr, 25, 943, 10.4319/lo.1980.25.5.0943 · DOI
- Reysenbach, 2000, Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent, Appl Environ Microbiol, 66, 3798, 10.1128/AEM.66.9.3798-3806.2000 · DOI
- Takai, 2003, Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields, FEMS Microbiol Lett, 218, 167
- Takai, 2004, Hydrogenimonas thermophila gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing chemolithoautotroph within the ε - Proteobacteria isolated from a black smoker in a Central Indian Ridge hydrothermal field, Int J Syst Evol Microbiol, 54, 25, 10.1099/ijs.0.02787-0 · DOI
- Tamaoka, 1984, Determination of DNA base composition by reversed-phase high-performance liquid chromatography, FEMS Microbiol Lett, 25, 125, 10.1111/j.1574-6968.1984.tb01388.x · DOI
- Teske, 2002, Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities, Appl Environ Microbiol, 68, 1994, 10.1128/AEM.68.4.1994-2007.2002 · DOI
- Thompson, 1997, The clustal_x Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res, 25, 4876, 10.1093/nar/25.24.4876 · DOI
- Zillig, 1990, Hyperthermus butylicus , a hyperthermophilic sulfur-reducing archaebacterium that ferments peptides, J Bacteriol, 172, 3959, 10.1128/JB.172.7.3959-3965.1990 · DOI
Cited by
Sorted by citations
Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.
Meier, D. V., Pjevac, P., Bach, W., Hourdez, S., Girguis, P. R., Vidoudez, C., Amann, R., & Meyerdierks, A. (2017) · The ISME Journal · doi:10.1038/ismej.2017.37 · Cited by 177
Petersen, J. M., Ramette, A., Lott, C., Cambon‐Bonavita, M., Zbinden, M., & Dubilier, N. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.02129.x · Cited by 107
Guri, M., Durand, L., Cueff-Gauchard, V., Zbinden, M., Crassous, P., Shillito, B., & Cambon-Bonavita, M.-A. (2012) · The ISME Journal · doi:10.1038/ismej.2011.133 · Cited by 87
Jan, C., Petersen, J. M., Werner, J., Teeling, H., Huang, S., Glöckner, F. O., Golyshina, O. V., Dubilier, N., Golyshin, P. N., Jebbar, M., et al. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12406 · Cited by 83
Stokke, R., Dahle, H., Roalkvam, I., Wissuwa, J., Daae, F. L., Tooming‐Klunderud, A., Thorseth, I. H., Pedersen, R. B., & Steen, I. H. (2015) · Environmental Microbiology · doi:10.1111/1462-2920.12970 · Cited by 63
Metadata
- Authors
- Inagaki, F., Takai, K., Nealson, K. H., & Horikoshi, K.
- Affiliations
- Subground Animalcule Retrieval (SUGAR) Project, Frontier Research System for Extremophiles, Japan Marine Science & Technology Center (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan
- Department of Earth Sciences, University of Southern California, 3651 Trousdale Pkwy, Los Angeles, CA 90089-0740, USA
- Venue
- International Journal of Systematic and Evolutionary Microbiology
- Publisher
- Microbiology Society
- Published
- 2004-09-01
- Volume
- 54
- Issue
- 5
- Pages
- 1477-1482
- ISSN
- 1466-5026
- 1466-5034
- Cited by
- 368
- References
- 0
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments. https://app.cochat.ai/papers/10.1099/ijs.0.03042-0
- The paper
- Inagaki, F., Takai, K., Nealson, K. H., & Horikoshi, K. (2004). Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments. International Journal of Systematic and Evolutionary Microbiology. https://doi.org/10.1099/ijs.0.03042-0
