Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata

Guri, Mathieu; Durand, Lucile; Cueff-Gauchard, Valérie; Zbinden, Magali; Crassous, Philippe; Shillito, Bruce; Cambon-Bonavita, Marie-Anne

doi:10.1038/ismej.2011.133

Cited by 87Microbial Community Ecology and PhysiologyMarine Biology and Ecology ResearchMethane Hydrates and Related Phenomena

Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata

Open access

Guri, Mathieu, Durand, Lucile, Cueff-Gauchard, Valérie, Zbinden, Magali, Crassous, Philippe, Shillito, Bruce, Cambon-Bonavita, Marie-Anne·2012·The ISME Journal

DOI 10.1038/ismej.2011.133PMC PMC3280129

Open this paper in CoChat — free account Open PDF

Abstract

The caridean shrimp Rimicaris exoculata dominates the fauna at several Mid-Atlantic Ridge hydrothermal vent sites. This shrimp has an enlarged gill chamber, harboring a dense ectosymbiotic community of chemoautotrophic bacteria associated with mineral oxide deposits. Until now, their acquisition is not fully understood. At three hydrothermal vent sites, we analyzed the epibionts diversity at different moult stages and also in the first stages of the shrimp life (eggs, hatched eggs (with larvae) and juveniles). Hatched eggs associated with young larvae were collected for the first time directly from gravid females at the Logachev vent site during the Serpentine cruise. An approach using 16S rRNA clone libraries, scanning and transmission electron microscopy, and fluorescent in situ hybridization was used. Molecular results and microscope observations indicated a switch in the composition of the bacterial community between early R. exoculata life cycle stage (egg libraries dominated by the Gammaproteobacteria) and later stages (juvenile/adult libraries dominated by the Epsilonproteobacteria). We hypothesized that the epibiotic phylotype composition could vary according to the life stage of the shrimp. Our results confirmed the occurrence of a symbiosis with Gammaproteobacteria and Epsilonproteobacteria, but more complex than previously assumed. We revealed the presence of active type-I methanotrophic bacteria colonizing the cephalothorax of shrimps from the Rainbow site. They were also present on the eggs from the Logachev site. This could be the first ‘epibiotic’ association between methanotrophic bacteria and hydrothermal vent crustacean. We discuss possible transmission pathways for epibionts linked to the shrimp life cycle.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1038/ismej.2011.133

Cites

75 of 75 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Mother to offspring bacterial transmission has been strongly hypothesized to modulate the microbiota of the eggs of the vent shrimp Rimicaris exoculata.
“Furthermore, mother to offspring bacterial transmission has been strongly hypothesized to modulate the microbiota of the eggs of the vent shrimp Rimicaris exoculata (Guri et al., 2012; Methou et al., 2019).”
From The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission (2022) · cites this paper as Guri et al., 2012
In “Epibiont diversity and acquisition,” the paper proposes that bacteria in egg mucus could result from mother-to-offspring transmission. But it presents this as a possibility, not a strong hypothesis, and says the egg mucus probably facilitates horizontal transmission instead. (LLM, conf=0.87)
Experimental — accuracy not yet measured
Colonization of eggs of R. exoculata by epibiotic bacteria was recently described, and the lineages of Gammaproteobacteria and Epsilonbacteraeota found were the same as those retrieved within the cephalothorax of adults.
“Colonization of eggs of this species by epibiotic bacteria was recently described, and the lineages of Gammaproteobacteria and Epsilonbacteraeota found were the same as those retrieved within the cephalothorax of adults (Guri et al., 2012).”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Guri et al., 2012
Our SEM observations confirmed the presence of a mucus-like material surrounding the eggs at every developmental stage.
“As stated in a previous study (Guri et al., 2012), our SEM observations confirmed the presence of a mucus-like material surrounding the eggs at every developmental stage (Figure 2G).”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Guri et al., 2012
Similar variations according to vent fluid composition were also described for symbiont communities within the cephalothorax of adult R. exoculata and are not uncommon even in endosymbiotic communities of other vent species.
“Similar variations according to vent fluid composition were also described for symbiont communities within the cephalothorax of adult R. exoculata (Guri et al., 2012; Jan et al., 2014) and are not uncommon even in endosymbiotic communities of other vent species.”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Guri et al., 2012
Establishment of Epsilonbacteraeota from the Sulfurovaceae family was not as favored on egg envelopes as it was on pleopods.
“Surprisingly, although they have been reported as the dominant symbionts within the R. exoculata cephalothorax in many studies (Petersen et al., 2010; Hügler et al., 2011; Guri et al., 2012), establishment of Epsilonbacteraeota from the Sulfurovaceae family was not as favored on egg envelopes as it was on pleopods.”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Guri et al., 2012

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617 · see citing works
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,962 · see citing works
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Felsenstein, J. (1985) · Evolution · doi:10.1111/j.1558-5646.1985.tb00420.x · Cited by 44,735 · see citing works
Nucleic acid techniques in bacterial systematics
Stackebrandt, E., & Goodfellow, M. (1991) · Wiley eBooks · Cited by 9,494 · see citing works
16S/23S rRNA sequencing
Lane, D. (1991) · Medical Entomology and Zoology · Cited by 7,944 · see citing works
THE POPULATION FREQUENCIES OF SPECIES AND THE ESTIMATION OF POPULATION PARAMETERS
Good, I. J. (1953) · Biometrika · doi:10.1093/biomet/40.3-4.237 · Cited by 3,427 · see citing works
Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness
Schloss, P. D., & Handelsman, J. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.3.1501-1506.2005 · Cited by 2,503 · see citing works
SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
Galtier, N., Gouy, M., & Gautier, C. (1996) · Computer applications in the biosciences · doi:10.1093/bioinformatics/12.6.543 · Cited by 2,264 · see citing works
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
Amann, R., Krumholz, L. R., & Stahl, D. A. (1990) · Journal of Bacteriology · doi:10.1128/jb.172.2.762-770.1990 · Cited by 2,207 · see citing works
Phylogenetic Oligodeoxynucleotide Probes for the Major Subclasses of Proteobacteria: Problems and Solutions
Manz, W., Amann, R., Ludwig, W., Wagner, M., & SCHLEIFER, K. H. (1992) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(11)80121-9 · Cited by 2,044 · see citing works
Methanotrophic bacteria
Hanson, R. S., & Hanson, T. (1996) · Microbiological Reviews · doi:10.1128/mr.60.2.439-471.1996 · Cited by 1,704 · see citing works
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
Manz, W., Amann, R., Ludwig, W., Vancanneyt, M., & SCHLEIFER, K. H. (1996) · Microbiology · doi:10.1099/13500872-142-5-1097 · Cited by 1,176 · see citing works
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
Gerard Muyzer, C., Teske, A., Wirsen, C. O., & Jannasch, H. W. (1995) · Archives of Microbiology · doi:10.1007/bf02529967 · Cited by 1,112 · see citing works
Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
Dubilier, N., Bergin, C., & Lott, C. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1992 · Cited by 1,073 · see citing works
Development and application of nucleic acid probes
Stahl, D. A. (1991) · Medical Entomology and Zoology · Cited by 912 · see citing works
Geochemistry of high H2 and CH4 vent fluids issuing from ultramafic rocks at the Rainbow hydrothermal field (36°14′N, MAR)
Charlou, J., Donval, J., Fouquet, Y., Jean‐Baptiste, P., & Holm, N. G. (2002) · Chemical Geology · doi:10.1016/s0009-2541(02)00134-1 · Cited by 909 · see citing works
A complex journey: transmission of microbial symbionts.
Bright, M., & Bulgheresi, S. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2262 · Cited by 894 · cited 1× · see citing works
“Vertical transmission usually implies internalization of symbionts inside the egg or in oviducts (Bright and Bulgheresi, 2010).”
Background
The rainbow vent fluids (36°14′N, MAR): the influence of ultramafic rocks and phase separation on trace metal content in Mid-Atlantic Ridge hydrothermal fluids
Douville, É., Charlou, J., Oelkers, É. H., Bienvenu, P., Colon, C. F. J., Donval, J., Fouquet, Y., Prieur, D., & Appriou, P. (2002) · Chemical Geology · doi:10.1016/s0009-2541(01)00351-5 · Cited by 701 · see citing works
Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment
Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., SCHLEIFER, K. H., & Wagner, M. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.10.5064-5081.2002 · Cited by 674 · see citing works
Molecular Characterization of Functional and Phylogenetic Genes from Natural Populations of Methanotrophs in Lake Sediments
Costello, A. M., & Lidstrom, M. E. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.11.5066-5074.1999 · Cited by 631 · see citing works
Evaluation of PCR-Generated Chimeras, Mutations, and Heteroduplexes with 16S rRNA Gene-Based Cloning
Qiu, X., Wu, L., Huang, H., McDonel, P. E., Palumbo, A. V., Tiedje, J. M., & Zhou, J. Z. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.2.880-887.2001 · Cited by 414 · see citing works
High Bacterial Diversity in Permanently Cold Marine Sediments
Ravenschlag, K., Sahm, K., Pernthaler, J., & Amann, R. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.9.3982-3989.1999 · Cited by 410 · see citing works
Methane- and Sulfur-Metabolizing Microbial Communities Dominate the Lost City Hydrothermal Field Ecosystem
Brazelton, W. J., Schrenk, M. O., Kelley, D. S., & Baross, J. A. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.00574-06 · Cited by 404 · see citing works
Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
Inagaki, F., Takai, K., Nealson, K. H., & Horikoshi, K. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.03042-0 · Cited by 389 · see citing works
The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
Bent, S. J., & Forney, L. J. (2008) · The ISME Journal · doi:10.1038/ismej.2008.44 · Cited by 312 · see citing works
Geochemistry of hydrothermal fluids from the ultramafic-hosted Logatchev hydrothermal field, 15°N on the Mid-Atlantic Ridge: Temporal and spatial investigation
Schmidt, K., Koschinsky, A., Garbe‐Schönberg, D., de Carvalho, L. M., & Seifert, R. (2007) · Chemical Geology · doi:10.1016/j.chemgeo.2007.01.023 · Cited by 311 · see citing works
Variations in deep-sea hydrothermal vent communities on the Mid-Atlantic Ridge near the Azores plateau
Desbruyères, D., Biscoito, M., Caprais, J., Colaço, A., Comtet, T., Crassous, P., Fouquet, Y., Khripounoff, A., Bris, N. L., Olu, K., et al. (2001) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/s0967-0637(00)00083-2 · Cited by 302 · see citing works
Self-citation
Reduction of (per)chlorate by a novel organism isolated from paper mill waste
Bruce, R. A., Achenbach, L. A., & Coates, J. D. (1999) · Environmental Microbiology · doi:10.1046/j.1462-2920.1999.00042.x · Cited by 264 · see citing works
Estimating Population Size and Transmission Bottlenecks in Maternally Transmitted Endosymbiotic Bacteria
Mira, Á., & Moran, N. A. (2002) · Microbial Ecology · doi:10.1007/s00248-002-0012-9 · Cited by 244 · see citing works
Reproduction and dispersal at vents and cold seeps
Tyler, P. A., & Young, C. M. (1999) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315499000235 · Cited by 229 · see citing works
Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge.
López‐García, P., Duperron, S., Philippot, P., Foriel, J., Susini, J., & Moreira, D. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00495.x · Cited by 221 · see citing works
Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site.
Polz, M. F., & Cavanaugh, C. M. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.16.7232 · Cited by 217 · see citing works
Methanotrophic symbioses in marine invertebrates
Petersen, J. M., & Dubilier, N. (2009) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2009.00081.x · Cited by 186 · see citing works
Dual Symbiosis in a Bathymodiolus sp. Mussel from a Methane Seep on the Gabon Continental Margin (Southeast Atlantic): 16S rRNA Phylogeny and Distribution of the Symbionts in Gills
Duperron, S., Nadalig, T., Caprais, J., Sibuet, M., Fiala‐Médioni, A., Amann, R., & Dubilier, N. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.4.1694-1700.2005 · Cited by 179 · see citing works
Embryos of Homarus americanus are Protected by Epibiotic Bacteria
Gil-Turnes, M. S., & Fenical, W. (1992) · Biological Bulletin · doi:10.2307/1542184 · Cited by 177 · see citing works
Comparison of Vertical Distributions of Prokaryotic Assemblages in the Anoxic Cariaco Basin and Black Sea by Use of Fluorescence In Situ Hybridization
Lin, X., Wakeham, S. G., Putnam, I. F., Astor, Y., Scranton, M. I., CHISTOSERDOV, A. Y., & Taylor, G. T. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.4.2679-2690.2006 · Cited by 173 · see citing works
Feeding biology of the shrimp Rimicaris exoculata at hydrothermal vents on the Mid-Atlantic Ridge
Dover, C. L. V., Fry, B., Grassle, J. F., Humphris, S. E., & Rona, P. A. (1988) · Marine Biology · doi:10.1007/bf00391196 · Cited by 160 · see citing works
Novel Forms of Structural Integration between Microbes and a Hydrothermal Vent Gastropod from the Indian Ocean
Goffredi, S. K., Warén, A., Orphan, V. J., Dover, C. L. V., & Vrijenhoek, R. C. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.5.3082-3090.2004 · Cited by 158 · see citing works
TWO NEW CARIDEAN SHRIMPS (BRESILIIDAE) FROM A HYDROTHERMAL FIELD ON THE MID-ATLANTIC RIDGE
Williams, A. B., & Rona, P. A. (1986) · Journal of Crustacean Biology · doi:10.1163/193724086x00299 · Cited by 140 · see citing works
Two New Caridean Shrimps (Bresiliidae) from a Hydrothermal Field on the Mid-Atlantic Ridge
Williams, A. B., & Rona, P. A. (1986) · Journal of Crustacean Biology · doi:10.2307/1548184 · Cited by 129 · see citing works
The absence of sharks from abyssal regions of the world's oceans
Priede, I. G., Froese, R., Bailey, D. M., Bergstad, O. A., Collins, M. A., Dyb, J. E., Henriques, C., Jones, E. G., & King, N. (2006) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2005.3461 · Cited by 128 · see citing works
Symbioses between deep-sea mussels (Mytilidae: Bathymodiolinae) and chemosynthetic bacteria: diversity, function and evolution
Duperron, S., Lorion, J., Samadi, S., Gros, O., & Gaill, F. (2008) · Comptes Rendus Biologies · doi:10.1016/j.crvi.2008.08.003 · Cited by 125 · see citing works
Common trends in mutualism revealed by model associations between invertebrates and bacteria: Table 1
Chaston, J. M., & Goodrich‐Blair, H. (2009) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2009.00193.x · Cited by 117 · see citing works
Trophic ecology of massive shrimp aggregations at a Mid‐Atlantic Ridge hydrothermal vent site
Polz, M. F., Robinson, J. J., Cavanaugh, C. M., & Dover, C. L. V. (1998) · Limnology and Oceanography · doi:10.4319/lo.1998.43.7.1631 · Cited by 109 · see citing works
Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma‐ and epsilonproteobacteria at four Mid‐Atlantic Ridge hydrothermal vent fields
Petersen, J. M., Ramette, A., Lott, C., Cambon‐Bonavita, M., Zbinden, M., & Dubilier, N. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.02129.x · Cited by 107 · see citing works
Self-citation
Occurrence of Deferribacterales and Entomoplasmatales in the deep-sea Alvinocarid shrimp Rimicaris exoculata gut.
Zbinden, M., & Cambon-Bonavita, M.-A. (2003) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(03)00176-4 · Cited by 101 · see citing works
Self-citation
Microbial diversity associated with the hydrothermal shrimpRimicaris exoculatagut and occurrence of a resident microbial community
Durand, L., Zbinden, M., Cueff-Gauchard, V., Duperron, S., Roussel, E. G., Shillito, B., & Cambon-Bonavita, M.-A. (2010) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2009.00806.x · Cited by 100 · see citing works
Self-citation
Distribution of bacteria and associated minerals in the gill chamber of the vent shrimp Rimicaris exoculata and related biogeochemical processes.
Zbinden, M., Le Bris, N., Gaill, F., & Compère, P. (2004) · Marine Ecology Progress Series · doi:10.3354/meps284237 · Cited by 95 · see citing works
Self-citation
Recent population expansion and connectivity in the hydrothermal shrimp Rimicaris exoculata along the Mid-Atlantic Ridge
Teixeira, S., Cambon‐Bonavita, M., Serrão, E. Á., Desbruyères, D., & Arnaud‐Haond, S. (2010) · Journal of Biogeography · doi:10.1111/j.1365-2699.2010.02408.x · Cited by 92 · see citing works
Self-citation
New insigths on the metabolic diversity among the epibiotic microbial communitiy of the hydrothermal shrimp Rimicaris exoculata.
Zbinden, M., Shillito, B., Le Bris, N., de Villardi de Montlaur, C., Roussel, E., Guyot, F., Gaill, F., & Cambon-Bonavita, M.-A. (2008) · Journal of Experimental Marine Biology and Ecology · doi:10.1016/j.jembe.2008.03.009 · Cited by 89 · see citing works
Self-citation
Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.
Hügler, M., Petersen, J. M., Dubilier, N., Imhoff, J. F., & Sievert, S. M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016018 · Cited by 80 · see citing works
Indigenous ectosymbiotic bacteria associated with diverse hydrothermal vent invertebrates
Goffredi, S. K. (2010) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2010.00136.x · Cited by 80 · see citing works
Feeding specialization of bresiliid shrimps in the TAG site hydrothermal community
Gebruk, A., Pimenov, N., & Sawichev, A. (1993) · Marine Ecology Progress Series · doi:10.3354/meps098247 · Cited by 70 · see citing works
Unusual fatty acid composition of storage lipids in the bresilioid shrimp Rimicaris exoculata couples the photic zone with MAR hydrothermal vent sites
Pond, D., Gebruk, A. V., Southward, E., Southward, A., Fallick, A. E., Bell, M., & Sargent, J. (2000) · Marine Ecology Progress Series · doi:10.3354/meps198171 · Cited by 68 · see citing works
The hydrothermal vent community of a new deep-sea field, Ashadze-1, 12°58′N on the Mid-Atlantic Ridge
Fabri, M.-C., Bargain, A., Briand, P., Gebruk, A. V., Fouquet, Y., Morineaux, M., & Desbruyères, D. (2010) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315410000731 · Cited by 68 · see citing works
Bacterial symbionts and mineral deposits in the branchial chamber of the hydrothermal vent shrimp Rimicaris exoculata: relationship to moult cycle
Corbari, L., Zbinden, M., Cambon-Bonavita, M., Gaill, F., & Compère, P. (2008) · Aquatic Biology · doi:10.3354/ab00024 · Cited by 67 · see citing works
Self-citation
Lipid and lipid carbon stable isotope composition of the hydrothermal vent shrimp Mirocaris fortunata:evidence for nutritional dependence on photosynthetically fixed carbon
Pond, D., Segonzac, M., Bell, M., Dixon, D., Fallick, A. E., & Sargent, J. (1997) · Marine Ecology Progress Series · doi:10.3354/meps157221 · Cited by 65 · see citing works
Trophic ecology of Rimicaris exoculata : a combined lipid abundance/stable isotope approach
Rieley, G., Dover, C. L. V., Hedrick, D. B., & Eglinton, G. (1999) · Marine Biology · doi:10.1007/s002270050489 · Cited by 62 · see citing works
Reproductive biology of three caridean shrimp, Rimicaris exoculata, Chorocaris chacei and Mirocaris fortunata (Caridea: Decapoda), from hydrothermal vents
Ramírez-Llodra, E., Tyler, P. A., & Copley, J. (2000) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315400002174 · Cited by 59 · see citing works
Interactions of Deep-Sea Vent Invertebrates with Their Environment: The Case of Rimicaris exoculata
Schmidt, C., Bris, N. L., & Gaill, F. (2008) · Journal of Shellfish Research · doi:10.2983/0730-8000(2008)27[79:iodviw]2.0.co;2 · Cited by 58 · see citing works
Water–mucin phases: conditions for mucus liquid crystallinity
Davies, J. M., & Viney, C. (1998) · Thermochimica Acta · doi:10.1016/s0040-6031(98)00275-5 · Cited by 56 · see citing works
Molecular characterization of bacteria associated with the trophosome and the tube of Lamellibrachia sp., a siboglinid annelid from cold seeps in the eastern Mediterranean
Duperron, S., de Beer, D., Zbinden, M., Boëtius, A., Schipani, V., Kahil, N., & Gaill, F. (2009) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2009.00724.x · Cited by 50 · see citing works
Self-citation
Colonization of Sulfurovum sp. on the gill surfaces of Alvinocaris longirostris, a deep‐sea hydrothermal vent shrimp
Tokuda, G., Yamada, A., Nakano, K., Arita, N. O., & Yamasaki, H. (2007) · Marine Ecology · doi:10.1111/j.1439-0485.2007.00211.x · Cited by 44 · see citing works
Occurrence and recent long-distance dispersal of deep-sea hydrothermal vent shrimps
Tokuda, G., Yamada, A., Nakano, K., Arita, N. O., & Yamasaki, H. (2005) · Biology Letters · doi:10.1098/rsbl.2005.0420 · Cited by 44 · see citing works
Evaluation of P(Xt>Yt ) when both Xt and Yt are residual lifetimes of two systems
Zardasht, V., & Asadi, M. (2010) · Statistica Neerlandica · doi:10.1111/j.1467-9574.2010.00464.x · Cited by 43 · see citing works
Taxonomic Review of the Hydrothermal Vent Shrimp Genera Rimicaris Williams & Rona and Chorocaris Martin & Hessler (Crustacea: Decapoda: Caridea: Alvinocarididae)
Komai, T., & Segonzac, M. (2008) · Journal of Shellfish Research · doi:10.2983/0730-8000(2008)27[21:trothv]2.0.co;2 · Cited by 40 · see citing works
First access to live alvinellas
Shillito, B., Bris, N. L., Gaill, F., Rees, J., & Zal, F. (2004) · High Pressure Research · doi:10.1080/08957950310001635774 · Cited by 34 · see citing works
Self-citation
Gamma‐ and epsilonproteobacterial ectosymbionts of a shallow‐water marine worm are related to deep‐sea hydrothermal vent ectosymbionts
Ruehland, C., & Dubilier, N. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02256.x · Cited by 33 · see citing works
Attachment mechanism in a highly specific association between ectosymbiotic bacteria and marine nematodes
Nussbaumer, A. D., Bright, M., Baranyi, C., Beisser, C. J., & Ott, J. A. (2004) · Aquatic Microbial Ecology · doi:10.3354/ame034239 · Cited by 32 · see citing works
Lithoheterotrophic growth and electron transfer chain components of the filamentous gliding bacteriumLeucothrix mucorDSM 2157 during oxidation of sulfur compounds
Grabovich, M. Y., Muntyan, M. S., Lebedeva, V. Y., Ustiyan, V. S., & Дубинина, Г. А. (1999) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1999.tb13772.x · Cited by 25 · see citing works
ENIGMA OF THE TROPHIC ADAPTATION OF THE SHRIMP ALVINOCARIDIDAE IN HYDROTHERMAL AREAS ALONG THE MID-ATLANTIC RIDGE
Segonzac, M., Desaintlaurent, M., & Casanova, B. (1993) · Cahiers de biologie marine · doi:10.21411/cbm.a.b3683e29 · Cited by 16 · see citing works
Lipid profiles of hydrothermal vent shrimps
Copley, C. E. A., Tyler, P. A., & Varney, M. S. (1998) · Cahiers de biologie marine · Cited by 15 · see citing works
Phylogenetic Characterization of Episymbiotic Bacteria Hosted by a Hydrothermal Vent Limpet (Lepetodrilidae, Vetigastropoda)
Bates, A. E., Harmer, T. L., Roeselers, G., & Cavanaugh, C. M. (2011) · Biological Bulletin · doi:10.1086/bblv220n2p118 · Cited by 10 · see citing works
IMPACT OF BACTERIAL EPIBIOSIS ON FUNCTIONAL-MORPHOLOGY OF SHRIMP ASSOCIATED WITH THE MID-ATLANTIC HYDROTHERMAL CONDITIONS
Casanova, B., Brunet, M., & Segonzac, M. (1993) · Cahiers de biologie marine · doi:10.21411/cbm.a.e587f68c · Cited by 6 · see citing works

Flagged first, then by citations

2 of the 77 references couldn’t be matched to a known paper.

Sorted by citations

Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage
Chaillou, S., Chaulot‐Talmon, A., Caekebeke, H., Cardinal, M., Christieans, S., Denis, C., Desmonts, M.-H., Dousset, X., Feurer, C., Hamon, E., et al. (2014) · The ISME Journal · doi:10.1038/ismej.2014.202 · Cited by 350 · see citing works
Inorganic carbon fixation by chemosynthetic ectosymbionts and nutritional transfers to the hydrothermal vent host-shrimp Rimicaris exoculata
Ponsard, J., Cambon-Bonavita, M.-A., Zbinden, M., Lepoint, G., Joassin, A., Corbari, L., Shillito, B., Durand, L., Cueff-Gauchard, V., & Compère, P. (2013) · The ISME Journal · doi:10.1038/ismej.2012.87 · Cited by 110 · see citing works
Self-citation
Bacterial biota of shrimp intestine is significantly modified by the use of a probiotic mixture: a high throughput sequencing approach
Vargas‐Albores, F., Porchas‐Cornejo, M. A., Martínez‐Porchas, M., Villalpando‐Canchola, E., Gollas‐Galván, T., & Martínez‐Córdova, L. R. (2017) · Helgoland Marine Research · doi:10.1186/s10152-017-0485-z · Cited by 98 · see citing works
Microdistribution of Faunal Assemblages at Deep-Sea Hydrothermal Vents in the Southern Ocean
Marsh, L., Copley, J., Huvenne, V. A. I., Linse, K., Reid, W. D. K., Rogers, A. D., Sweeting, C. J., & Tyler, P. A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0048348 · Cited by 93 · see citing works
The gill chamber epibiosis of deep‐sea shrimp <scp> R </scp> imicaris exoculata : an in‐depth metagenomic investigation and discovery of <scp> Z </scp> etaproteobacteria
Jan, C., Petersen, J. M., Werner, J., Teeling, H., Huang, S., Glöckner, F. O., Golyshina, O. V., Dubilier, N., Golyshin, P. N., Jebbar, M., et al. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12406 · Cited by 83 · see citing works
Self-citation
In the beginning: egg–microbe interactions and consequences for animal hosts
Nyholm, S. V. (2020) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2019.0593 · Cited by 74 · see citing works
Symbiont transmission in marine sponges: reproduction, development, and metamorphosis
Carrier, T. J., Maldonado, M., Schmittmann, L., Pita, L., Bosch, T. C. G., & Hentschel, U. (2022) · BMC Biology · doi:10.1186/s12915-022-01291-6 · Cited by 58 · see citing works
Comparative transcriptome analysis of Rimicaris sp. reveals novel molecular features associated with survival in deep-sea hydrothermal vent
Zhang, J., Sun, Q.-L., Luan, Z., Lian, C., & Sun, L. (2017) · Scientific Reports · doi:10.1038/s41598-017-02073-9 · Cited by 51 · see citing works
Identification and Characterization of Carboxyl Esterases of Gill Chamber-Associated Microbiota in the Deep-Sea Shrimp Rimicaris exoculata by Using Functional Metagenomics
Alcaide, M. M., Tchigvintsev, A., Martínez‐Martínez, M., Popovic, A., Reva, O. N., Lafraya, Á., Bargiela, R., Nechitaylo, T. Y., Matesanz, R., Cambon‐Bonavita, M., et al. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.03387-14 · Cited by 50 · see citing works
Self-citation
Core Gut Microbiota of Shrimp Function as a Regulator to Maintain Immune Homeostasis in Response to WSSV Infection
Zhang, S., & Sun, X. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.02465-21 · Cited by 47 · see citing works
Diversity and methane oxidation of active epibiotic methanotrophs on live Shinkaia crosnieri
Watsuji, T., Yamamoto, A., Takaki, Y., Uéda, K., Kawagucci, S., & Takai, K. (2014) · The ISME Journal · doi:10.1038/ismej.2013.226 · Cited by 46 · see citing works
Free‐living bacterial communities associated with tubeworm ( R idgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent habitats at the Main Endeavour Field, Juan de Fuca Ridge
Forget, N. L., & Juniper, S. K. (2013) · MicrobiologyOpen · doi:10.1002/mbo3.70 · Cited by 45 · see citing works
Bacterial communities and syntrophic associations involved in anaerobic oxidation of methane process of the S onora M argin cold seeps, G uaymas B asin
Vigneron, A., Cruaud, P., Pignet, P., Caprais, J., Gayet, N., Cambon‐Bonavita, M., Godfroy, A., & Toffin, L. M. A. A. (2013) · Environmental Microbiology · doi:10.1111/1462-2920.12324 · Cited by 41 · see citing works
Self-citation
Nature's microbiome: introduction
Russell, J. A., Dubilier, N., & Rudgers, J. A. (2014) · Molecular Ecology · doi:10.1111/mec.12676 · Cited by 41 · see citing works
Rimicaris exoculata: biology and ecology of a shrimp from deep-sea hydrothermal vents associated with ectosymbiotic bacteria
Zbinden, M., & Cambon‐Bonavita, M. (2020) · Marine Ecology Progress Series · doi:10.3354/meps13467 · Cited by 38 · see citing works
Self-citation
Isotopic niche variability in macroconsumers of the East Scotia Ridge (Southern Ocean) hydrothermal vents: What more can we learn from an ellipse?
Reid, W., Sweeting, C., Wigham, B. D., McGill, R. A. R., & Polunin, N. V. C. (2015) · Marine Ecology Progress Series · doi:10.3354/meps11571 · Cited by 39 · see citing works
Morphology of first zoeal stage of four genera of alvinocaridid shrimps from hydrothermal vents and cold seeps: Implications for ecology, larval biology and phylogeny.
Hernández-Ávila, I., Cambon-Bonavita, M.-A., & Pradillon, F. (2015) · PLoS ONE · doi:10.1371/journal.pone.0144657 · Cited by 37 · see citing works
“This suggests the accumulation of new lipid reserves before the recruitment to the vents, which could supply, at least partially the period between the recruitment, maturity and the acquisition of symbiotic bacteria [16].”
Self-citation
Genetic population structure of four hydrothermal vent shrimp species (Alvinocarididae) in the Okinawa Trough, Northwest Pacific
Yahagi, T., Watanabe, H., Ishibashi, J., & Kojima, S. (2015) · Marine Ecology Progress Series · doi:10.3354/meps11267 · Cited by 35 · see citing works
Sediment Microbial Diversity of Three Deep-Sea Hydrothermal Vents Southwest of the Azores
Cerqueira, T., Pinho, D., Froufe, H. J. C., Santos, R. S., Bettencourt, R., & Egas, C. (2017) · Microbial Ecology · doi:10.1007/s00248-017-0943-9 · Cited by 32 · see citing works
Ontogenetic variation in epibiont community structure in the deep‐sea yeti crab,Kiwa puravida: convergence among crustaceans
Goffredi, S. K., Gregory, A., Jones, W. J., Morella, N. M., & Sakamoto, R. I. (2013) · Molecular Ecology · doi:10.1111/mec.12439 · Cited by 34 · see citing works
Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development
Methou, P., Hernández-Ávila, I., Aube, J., Cueff-Gauchard, V., Gayet, N., Amand, L., Shillito, B., Pradillon, F., & Cambon-Bonavita, M.-A. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00808 · Cited by 30 · see citing works
Self-citation
Linking regional variation of epibiotic bacterial diversity and trophic ecology in a new species of Kiwaidae (Decapoda, Anomura) from East Scotia Ridge (Antarctica) hydrothermal vents
Zwirglmaier, K., Reid, W. D. K., Heywood, J. L., Sweeting, C. J., Wigham, B. D., Polunin, N. V. C., Hawkes, J. A., Connelly, D. P., Pearce, D. A., & Linse, K. (2014) · MicrobiologyOpen · doi:10.1002/mbo3.227 · Cited by 33 · see citing works
Antimicrobial Peptides and Ectosymbiotic Relationships: Involvement of a Novel Type IIa Crustin in the Life Cycle of a Deep-Sea Vent Shrimp
Le Bloa, S., Boidin-Wichlacz, C., Cueff-Gauchard, V., Rosa, R. D., Cuvillier-Hot, V., Durand, L., Methou, P., Pradillon, F., Cambon-Bonavita, M.-A., & Tasiemski, A. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01511 · Cited by 30 · see citing works
“stages (5, 47) for early stages and (4, 33) for adults.”
BackgroundInfluentialSelf-citation
Biogeographical distribution ofRimicaris exoculataresident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites
Durand, L., Roumagnac, M., Cueff-Gauchard, V., Jan, C., Guri, M., Tessier, C., Haond, M., Crassous, P., Zbinden, M., Arnaud-Haond, S., et al. (2015) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiv101 · Cited by 32 · see citing works
Self-citation
Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Microbiome · doi:10.1186/s40168-021-01045-6 · Cited by 31 · see citing works
Self-citation
Gill chamber and gut microbial communities of the hydrothermal shrimp Rimicaris chacei Williams and Rona 1986: A possible symbiosis
Apremont, V., Cambon‐Bonavita, M., Cueff‐Gauchard, V., François, D., Pradillon, F., Corbari, L., & Zbinden, M. (2018) · PLoS ONE · doi:10.1371/journal.pone.0206084 · Cited by 29 · see citing works
Self-citation
The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission
Giraud, C., Callac, N., Boulo, V., Lam, J.-S., Pham, D., Selmaoui-Folcher, N., & Wabete, N. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.886752 · Cited by 26 · see citing works
Effect of depth and vent fluid composition on the carbon sources at two neighboring deep-sea hydrothermal vent fields (Mid-Cayman Rise)
Bennett, S. A., Dover, C. L. V., Breier, J. A., & Coleman, M. L. (2015) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2015.06.005 · Cited by 24 · see citing works
“ Candidatus Desulfobulbus rimicarensis,” an Uncultivated Deltaproteobacterial Epibiont from the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata
Jiang, L., Liu, X., Dong, C., Huang, Z., Cambon‐Bonavita, M., Alain, K., Gu, L., Wang, S., & Shao, Z. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.02549-19 · Cited by 23 · see citing works
Self-citation
Adaptation to the deep-sea hydrothermal vents and cold seeps: Insights from the transcriptomes of Alvinocaris longirostris in both environments
Hui, M., Cheng, J., & Sha, Z. (2018) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2018.03.014 · Cited by 22 · see citing works
Comparative Metagenomics of Viral Assemblages Inhabiting Four Phyla of Marine Invertebrates
Gudenkauf, B., & Hewson, I. (2016) · Frontiers in Marine Science · doi:10.3389/fmars.2016.00023 · Cited by 21 · see citing works
Structure and Connectivity of Hydrothermal Vent Communities Along the Mid-Ocean Ridges in the West Indian Ocean: A Review
Perez, M., Sun, J., Xu, Q., & Qian, P. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.744874 · Cited by 20 · see citing works
Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering.
Cowart, D. A., Durand, L., Cambon-Bonavita, M.-A., & Arnaud-Haond, S. (2017) · PLoS ONE · doi:10.1371/journal.pone.0172543 · Cited by 17 · see citing works
Self-citation
Comparative Analysis of Intestinal Microflora Between Two Developmental Stages of Rimicaris kairei, a Hydrothermal Shrimp From the Central Indian Ridge
Qi, L., Lian, C., Zhu, F.-C., Shi, M., & He, L. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.802888 · Cited by 17 · see citing works
Sources of organic carbon for Rimicaris hybisae: Tracing individual fatty acids at two hydrothermal vent fields in the Mid-Cayman rise
Streit, K., Bennett, S. A., Dover, C. L. V., & Coleman, M. L. (2015) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2015.02.003 · Cited by 16 · see citing works
Full-length 16S rRNA amplicon sequencing reveals the variation of epibiotic microbiota associated with two shrimp species of Alvinocarididae: possibly co-determined by environmental heterogeneity and specific recognition of hosts
Hui, M., Wang, A., Cheng, J., & Sha, Z. (2022) · PeerJ · doi:10.7717/peerj.13758 · Cited by 16 · see citing works
Microbial epibiotic community of the deep-sea galatheid squat lobster Munidopsis alvisca
Leinberger, J., Milke, F., Christodoulou, M., Poehlein, A., Caraveo-Patiño, J., Teske, A., & Brinkhoff, T. (2022) · Scientific Reports · doi:10.1038/s41598-022-06666-x · Cited by 13 · see citing works
Ecology, adaptation and acclimatisation mechanisms of Bythograeidae Williams, 1980, a unique endemic hydrothermal vent crabs family: current state of knowledge
Leignel, V., Hurtado, L. A., & Segonzac, M. (2017) · Marine and Freshwater Research · doi:10.1071/mf17007 · Cited by 13 · see citing works
Highlighting of quorum sensing lux genes and their expression in the hydrothermal vent shrimp Rimicaris exoculata ectosymbiontic community. Possible use as biogeographic markers
Le Bloa, S., Durand, L., Cueff- Gauchard, V., Le Bars, J., Taupin, L., Marteau, C., Bazire, A., & Cambon-Bonavita, M.-A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0174338 · Cited by 12 · see citing works
Self-citation
Identification and characterization of a symbiotic agglutination-related C-type lectin from the hydrothermal vent shrimp Rimicaris exoculata
Liu, X., Ye, S., Cheng, C.-Y., Li, H., Lu, B., Yang, W., & Yang, J. (2019) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2019.05.057 · Cited by 13 · see citing works
Reproduction in deep‐sea vent shrimps is influenced by diet, with rhythms apparently unlinked to surface production
Methou, P., Chen, C., Watanabe, H., Cambon‐Bonavita, M., & Pradillon, F. (2022) · Ecology and Evolution · doi:10.1002/ece3.9076 · Cited by 11 · see citing works
Self-citation
Genomic evidence for the first symbiotic Deferribacterota, a novel gut symbiont from the deep-sea hydrothermal vent shrimp Rimicaris kairei
Qi, L., Shi, M., Zhu, F.-C., Lian, C., & He, L. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1179935 · Cited by 10 · see citing works
Population structure and reproduction of the alvinocaridid shrimp Rimicaris exoculata on the Mid-Atlantic Ridge: Variations between habitats and vent fields
Hernández‐Ávila, I., Cambon‐Bonavita, M., Sarrazin, J., & Pradillon, F. (2021) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2022.103827 · Cited by 10 · see citing works
Self-citation
A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata
Aubé, J., Cambon‐Bonavita, M., Velo‐Suárez, L., Cueff‐Gauchard, V., Lesongeur, F., Guéganton, M., Durand, L., & Réveillaud, J. (2022) · Microbiome · doi:10.1186/s40168-022-01380-2 · Cited by 15 · see citing works
Self-citation
Symbioses of alvinocaridid shrimps from the South West Pacific: No chemosymbiotic diets but conserved gut microbiomes
Methou, P., Cueff‐Gauchard, V., Michel, L. N., Gayet, N., Pradillon, F., & Cambon‐Bonavita, M. (2023) · Environmental Microbiology Reports · doi:10.1111/1758-2229.13201 · Cited by 8 · see citing works
Self-citation
Variation in virome diversity in wild populations of Penaeus monodon (Fabricius 1798) with emphasis on pathogenic viruses
Orosco, F. L., & Lluisma, A. O. (2017) · VirusDisease · doi:10.1007/s13337-017-0389-1 · Cited by 10 · see citing works
Active Microbiota of Penaeus stylirostris Larvae: Partially Shaped via Vertical and Horizontal Transmissions and Larval Ontogeny
Callac, N., Giraud, C., Pham, D., Ansquer, D., Wabete, N., & Boulo, V. (2024) · Microorganisms · doi:10.3390/microorganisms12030608 · Cited by 9 · see citing works
Shrimp Antimicrobial Peptides: A Multitude of Possibilities
Vincent, S. A., Mathew, P., & Antony, S. P. (2022) · International Journal of Peptide Research and Therapeutics · doi:10.1007/s10989-022-10459-1 · Cited by 9 · see citing works
Molecular study of bacterial diversity within the trophosome of the vestimentiferan tubeworm R idgeia piscesae
Forget, N. L., Perez, M., & Juniper, S. K. (2014) · Marine Ecology · doi:10.1111/maec.12169 · Cited by 9 · see citing works
Anatomy and Symbiosis of the Digestive System of the Vent Shrimp Rimicaris Exoculata and Rimicaris Chacei Revealed Through Imaging Approaches
Guéganton, M., Rouxel, O., Durand, L., Cueff‐Gauchard, V., Gayet, N., Pradillon, F., & Cambon‐Bonavita, M. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.903748 · Cited by 9 · see citing works
Self-citation
Microbial Remediation Technologies for Mining Waste Management
Samarasekere, P. W. (2024) · Energy, environment, and sustainability · doi:10.1007/978-981-97-1152-9_3 · Cited by 7 · see citing works
An H-ferritin from the hydrothermal vent shrimp Rimicaris exoculata and its potential role in iron metabolism
Liu, X., Ye, S., Li, H., Lu, B., Yu, Y., Fan, Y., Yang, W., & Yang, J. (2019) · BioMetals · doi:10.1007/s10534-019-00174-8 · Cited by 6 · see citing works
Symbiont Community Composition in Rimicaris kairei Shrimps from Indian Ocean Vents with Notes on Mineralogy
Methou, P., Hikosaka, M., Chen, C., Watanabe, H., Miyamoto, N., Makita, H., Takahashi, Y., & Jenkins, R. G. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.00185-22 · Cited by 6 · see citing works
Symbiont Acquisition Strategies in Post‐Settlement Stages of Two Co‐Occurring Deep‐Sea Rimicaris Shrimp
Guéganton, M., Methou, P., Aubé, J., Noël, C., Rouxel, O., Cueff‐Gauchard, V., Gayet, N., Durand, L., Pradillon, F., & Cambon‐Bonavita, M. (2024) · Ecology and Evolution · doi:10.1002/ece3.70369 · Cited by 6 · see citing works
Self-citation
Novel insights into deep-sea hydrothermal vent and cold seep adaptation inferred from comparative transcriptome analysis of a munidopsid squat lobster distributed in both environments
Cheng, J., Yan, H., Hui, M., & Sha, Z. (2024) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2024.104245 · Cited by 5 · see citing works
Symbiotic Relationships
Ciancio, A. (2016) · Springer eBooks · doi:10.1007/978-94-024-0884-3_3 · Cited by 4 · see citing works
Deep‐Sea Hydrothermal Vents
Harmer, T. L. (2019) · Wiley eBooks · doi:10.1002/9781119300762.wsts0182 · Cited by 4 · see citing works
Comparative analysis of esophageal gland microbes between two body sizes of Gigantopelta aegis , a hydrothermal snail from the Southwest Indian Ridge
Mou, A., Li, X., Li, Z., Qu, L., Dong, Y., Wang, Z., Zhang, X., & Xu, Q. (2025) · Microbiology Spectrum · doi:10.1128/spectrum.02959-24 · Cited by 3 · see citing works
WSSV Infection in the Gut Microbiota of the Black Tiger Shrimp Penaeus monodon
Wang, Y., Wang, X., Gai, C., Li, Y., Xu, L., Wang, S., Li, L., Yu, X., Fu, R., Diao, J., et al. (2025) · Fishes · doi:10.3390/fishes10090440 · Cited by 3 · see citing works
Hydrothermal Vents: The Inhabitants, Their Way of Life and Their Adaptation to High Pressure
Macdonald, A. (2021) · Springer eBooks · doi:10.1007/978-3-030-67587-5_9 · Cited by 2 · see citing works
Larvae of Deep-Sea Invertebrates Harbor Low-Diversity Bacterial Communities
Carrier, T. J., Beaulieu, S. E., Mills, S. W., Mullineaux, L. S., & Reitzel, A. M. (2021) · Biological Bulletin · doi:10.1086/715669 · Cited by 1 · see citing works
Environmental Transmission of Symbionts in the Mangrove Crabs Aratus pisonii and Minuca rapax: Acquisition of the Bacterial Community through Larval Development to Juvenile Stage
Béziat, N. S., Duperron, S., & Gros, O. (2024) · Microorganisms · doi:10.3390/microorganisms12040652 · Cited by 1 · see citing works
FISH , a new tool for in situ preservation of RNA in tissues of deep‐sea mobile fauna
Cueff‐Gauchard, V., Aubé, J., Lagadec, J., Bignon, L., Lafontaine, J., Hernández‐Ávila, I., Marsaud, N., Shillito, B., Amand, L., Roussel, E. G., et al. (2025) · Limnology and Oceanography Methods · doi:10.1002/lom3.10677 · Cited by 1 · see citing works
Self-citation
Bacteria-Driven Fossil Ecosystems as Paleoindicators of Active Continental Margins and the Role of Carbonate Sediment-Hosted Vents in Geodynamic Reconstructions
Bujtor, L., Gyollai, I., Szabó, M. Z., Kovács, I., & Polgári, M. (2024) · Minerals · doi:10.3390/min14020125 · Cited by 1 · see citing works
P387 EFFECT OF BLOOD ON THE MORPHOLOGICAL, BIOCHEMICAL, AND BIOMECHANICAL PROPERTIES OF NEO-CARTILAGE, SYNTHESIZED BY ISOLATED CHONDROCYTES PRE-SEEDED ONTO A BIOLOGICAL SCAFFOLD
Sosio, C., Boschetti, F., Bevilacqua, C., Mangiavini, L., Scotti, C., Buragas, M., Fraschini, G., Gigante, A. P., & Peretti, G. M. (2006) · Osteoarthritis and Cartilage · doi:10.1016/s1063-4584(07)60831-0
Reproduction in deep-sea vent shrimps is shaped by diet and phylogeny, with rhythms unlinked to surface productionPreprint
Methou, P., Chen, C., Watanabe, H., Cambon‐Bonavita, M., & Pradillon, F. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.09.10.456763
Self-citation
Juvenile niches select between two distinct development trajectories and symbiosis modes in vent shrimpsPreprint
Methou, P., Guéganton, M., Copley, J., Watanabe, H., Pradillon, F., Cambon‐Bonavita, M., & Chen, C. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.07.02.547428
Self-citation
Epsilonproteobacteria: specialist in specific environments
聡, 中. (2014) · Kyokugen Kankyo Seibutsu Gakkaishi · doi:10.3118/extremophiles.13.2_63
Effects of developmental mode on genome size in shrimps (Dendrobranchiata and Caridea)
de Moraes, I. R. R., Castilho, A. L., & Hultgren, K. M. (2025) · Journal of Crustacean Biology · doi:10.1093/jcbiol/ruaf040
Additional file 15 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404267
Self-citation
Additional file 14 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404264
Self-citation
Additional file 9 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404294
Self-citation
Additional file 3 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404276
Self-citation
Additional file 2 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404273
Self-citation
Additional file 8 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404291
Self-citation
Additional file 13 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404261
Self-citation
Additional file 16 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404270
Self-citation
Additional file 7 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404288
Self-citation
Additional file 5 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404282
Self-citation
Additional file 4 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404279
Self-citation
Additional file 10 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404252
Self-citation
Additional file 11 of Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria
Cambon‐Bonavita, M., Aubé, J., Cueff‐Gauchard, V., & Réveillaud, J. (2021) · Figshare · doi:10.6084/m9.figshare.14404255
Self-citation
Evolutionary convergence and trophic diversity in hot vent and cold seep shrimps showcase a continuum of symbiosis
Methou, P., Mathieu‐Resuge, M., Michel, L. N., Cueff‐Gauchard, V., Watanabe, H. K., Cowell, E. J., Copley, J., Beinart, R. A., Zbinden, M., Pradillon, F., et al. (2026) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2025.2883
Self-citation
Description de la diversité microbienne associée à la crevette Rimicaris chacei : une possible double symbiose
Apremont, V. (2017) · doi:10.70675/d9f20765zc6ecz461bza22dz324ebafb09f8
Cycles de vie de deux crevettes hydrothermales de la dorsale médio-atlantique : Rimicaris exoculata et Rimicaris chacei
Methou, P. (2019) · theses.fr (ABES) · doi:10.70675/bf7aab7fzc361z40c2z9ac6z34c7f7b317db · Cited by 1 · see citing works
Identification et caractérisation fonctionnelle des communautés microbiennes en interaction avec les minéralisations hydrothermales
Guellec, S. L. (2019) · theses.fr (ABES) · doi:10.70675/997bf2c5zcd33z4fcez8f33z003e2c84834a
Dynamique des communautés procaryotiques actives dans l'élevage larvaires de la crevette bleue du Pacifique, Penaeus stylirostris : influence des intrants et identification de biomarqueurs bactériens de la santé des larves
Giraud, C. (2023) · doi:10.70675/a2e25d6fzc86fz4127za381z3f3f3e22f7f7

Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma‐ and epsilonproteobacteria at four Mid‐Atlantic Ridge hydrothermal vent fields
Petersen, J. M., Ramette, A., Lott, C., Cambon‐Bonavita, M., Zbinden, M., & Dubilier, N. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.02129.x · Cited by 107 · see citing works
Self-citation
Bacterial symbionts and mineral deposits in the branchial chamber of the hydrothermal vent shrimp Rimicaris exoculata: relationship to moult cycle
Corbari, L., Zbinden, M., Cambon-Bonavita, M., Gaill, F., & Compère, P. (2008) · Aquatic Biology · doi:10.3354/ab00024 · Cited by 67 · see citing works
Self-citation
Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata
Petersen, J. M., Dubilier, N., Imhoff, J. F., & Sievert, S. M. (2011)
Study on the bacterial epibionts diversity asscciated with the hydrothermal shrimp Rimicaris exoculata
Guri, M., & Cambon‐Bonavita, M. (2011) · OpenGrey (Institut de l'Information Scientifique et Technique)
Self-citation
The gill chamber epibiosis of deep‐sea shrimp <scp> R </scp> imicaris exoculata : an in‐depth metagenomic investigation and discovery of <scp> Z </scp> etaproteobacteria
Jan, C., Petersen, J. M., Werner, J., Teeling, H., Huang, S., Glöckner, F. O., Golyshina, O. V., Dubilier, N., Golyshin, P. N., Jebbar, M., et al. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12406 · Cited by 83 · see citing works
Self-citation

Authors: Guri, M., Durand, L., Cueff-Gauchard, V., Zbinden, M., Crassous, P., Shillito, B., & Cambon-Bonavita, M.-A.
Affiliations: Centre National de la Recherche Scientifique (FR)
Ifremer (FR)
Ifremer, DEEP/Laboratoire de Microbiologie des Environnements Extrêmes, UMR6197 , Technopôle Brest Iroise, BP70, Plouzané , France
Corresponding author: Guri, Mathieu
ORCID: Durand, Lucile
Zbinden, Magali
Shillito, Bruce
Venue: The ISME Journal
Publisher: Oxford University Press (OUP)
Published: 2011-10-13
Volume: 6
Issue: 3
Pages: 597-609
ISSN: 1751-7362 (ISSN-L)
1751-7370
DOI: 10.1038/ismej.2011.133
PMC: PMC3280129
OpenAlex: W2107696115
Semantic Scholar: 1c27cbc2d4b9b6c25172fcbe98becfa51b12f4ff
Cited by: 87
References: 77
Citations by year: 2026: 1 · 2025: 4 · 2024: 6 · 2023: 4 · 2022: 11 · 2021: 19 · 2020: 4 · 2019: 6 · 2018: 2 · 2017: 8 · 2016: 2 · 2015: 7 · 2014: 7 · 2013: 3 · 2012: 2
FWCI: 3.38
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: academic.oup.com/pages/standard-publication-reuse-rights (vor)
Locations: The ISME Journal (publishedVersion)
Europe PMC (PubMed Central) (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
HAL (submittedVersion)
Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea) (submittedVersion)
Funders: Institut Français de Recherche pour l'Exploitation de la Mer
Agence Nationale de la Recherche (ANR-06-BDIV-0005)
Centre National de la Recherche Scientifique
Topics: Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
Keywords: Rimicaris exoculata, epibiotic bacteria, hydrothermal vent shrimp, life stages, bacterial community composition, Gammaproteobacteria, Epsilonproteobacteria, ectosymbiosis, chemoautotrophic bacteria, Mid-Atlantic Ridge
MeSH terms: Animals, DNA, Bacterial, Female, Gills, Life Cycle Stages, Phylogeny, RNA, Ribosomal, 16S, Symbiosis, In Situ Hybridization, Fluorescence, Gammaproteobacteria, Epsilonproteobacteria, Decapoda, Hydrothermal Vents

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata

Abstract

Integrity signals

Claims the paper makes

Claims other papers make about this one

Self-check

Cites

Cited by

Related

Record

About these checks