Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma‐ and epsilonproteobacteria at four Mid‐Atlantic Ridge hydrothermal vent fields

Petersen, Jillian M.; Ramette, Alban; Lott, Christian; Cambon‐Bonavita, Marie‐Anne; Zbinden, Magali; Dubilier, Nicole

doi:10.1111/j.1462-2920.2009.02129.x

Cited by 107Microbial Community Ecology and PhysiologyMarine Biology and Ecology ResearchMethane Hydrates and Related Phenomena

Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma‐ and epsilonproteobacteria at four Mid‐Atlantic Ridge hydrothermal vent fields

Petersen, Jillian M., Ramette, Alban, Lott, Christian, Cambon‐Bonavita, Marie‐Anne, Zbinden, Magali, Dubilier, Nicole·2010·Environmental Microbiology

DOI 10.1111/j.1462-2920.2009.02129.x

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Abstract

The shrimp Rimicaris exoculata from hydrothermal vents on the Mid-Atlantic Ridge (MAR) harbours bacterial epibionts on specialized appendages and the inner surfaces of its gill chamber. Using comparative 16S rRNA sequence analysis and fluorescence in situ hybridization (FISH), we examined the R. exoculata epibiosis from four vents sites along the known distribution range of the shrimp on the MAR. Our results show that R. exoculata lives in symbiosis with two types of filamentous epibionts. One belongs to the Epsilonproteobacteria, and was previously identified as the dominant symbiont of R. exoculata. The second is a novel gammaproteobacterial symbiont that belongs to a clade consisting exclusively of sequences from epibiotic bacteria of hydrothermal vent animals, with the filamentous sulfur oxidizer Leucothrix mucor as the closest free-living relative. Both the epsilon- and the gammaproteobacterial symbionts dominated the R. exoculata epibiosis at all four MAR vent sites despite striking differences between vent fluid chemistry and distances between sites of up to 8500 km, indicating that the symbiosis is highly stable and specific. Phylogenetic analyses of two mitochondrial host genes showed little to no differences between hosts from the four vent sites. In contrast, there was significant spatial structuring of both the gamma- and the epsilonproteobacterial symbiont populations based on their 16S rRNA gene sequences that was correlated with geographic distance along the MAR. We hypothesize that biogeography and host-symbiont selectivity play a role in structuring the epibiosis of R. exoculata.

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Symbiotic bacterial assemblages are diverse in both cephalothorax and gut compartments, but are usually dominated by Epsilonbacteraeota and Gammaproteobacteria in the cephalothorax and by Deferribacteres, Entomoplamatales, and Epsilonbacteraeota in the gut.
“The symbiotic bacterial assemblages are diverse in both cephalothorax and gut compartments, but are usually dominated by Epsilonbacteraeota and Gammaproteobacteria in the cephalothorax (Zbinden et al., 2008; Petersen et al., 2010; Jan et al., 2014) and by Deferribacteres, Entomoplamatales, and Epsilonbacteraeota in the gut (Durand et al., 2010, 2015; Cowart et al., 2017).”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Petersen et al., 2010
Epsilonbacteraeota- and Gammaproteobacteria-related lineages have been found in abundance in the surrounding fluids.
“Whereas Epsilonbacteraeota- and Gammaproteobacteria-related lineages have been found in abundance in the surrounding fluids (Petersen et al., 2010)”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Petersen et al., 2010
Epsilonbacteraeota and thiotrophic Gammaproteobacteria are often described as sulfur oxidizers thriving in close but differing environmental niches due to their metabolic capacities.
“Epsilonbacteraeota and thiotrophic Gammaproteobacteria are often described as sulfur oxidizers thriving in close but differing environmental niches due to their metabolic capacities (Petersen et al., 2010; Meier et al., 2017).”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Petersen et al., 2010
Establishment of Epsilonbacteraeota from the Sulfurovaceae family was not as favored on egg envelopes as it was on pleopods.
“Surprisingly, although they have been reported as the dominant symbionts within the R. exoculata cephalothorax in many studies (Petersen et al., 2010; Hügler et al., 2011; Guri et al., 2012), establishment of Epsilonbacteraeota from the Sulfurovaceae family was not as favored on egg envelopes as it was on pleopods.”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Petersen et al., 2010
Occurrence of Epsilonbacteraeota, Gammaproteobacteria and Zetaproteobacteria symbiont-related lineages in vent fluids and microbial mats of vent sites where R. exoculata also lives supports the hypothesis of a horizontal transmission mode for these three groups.
“Occurrence of Epsilonbacteraeota, Gammaproteobacteria and Zetaproteobacteria symbiont-related lineages in vent fluids and microbial mats of vent sites where R. exoculata also lives (Petersen et al., 2010; Scott et al., 2015) supports the hypothesis of a horizontal transmission mode for these three groups.”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Petersen et al., 2010

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302 · see citing works
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
Folmer, O., Black, M., Hoeh, W., Lutz, R., & Vrijenhoek, R. (1994) · PubMed · doi:10.5281/zenodo.15145663 · Cited by 15,546 · see citing works
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J., & Glöckner, F. O. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm864 · Cited by 6,682 · see citing works
ARB: a software environment for sequence data
Ludwig, W. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh293 · Cited by 6,649 · see citing works
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
Amann, R., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R., & Stahl, D. A. (1990) · Applied and Environmental Microbiology · doi:10.1128/aem.56.6.1919-1925.1990 · Cited by 3,998 · see citing works
MICROBIAL STRESS-RESPONSE PHYSIOLOGY AND ITS IMPLICATIONS FOR ECOSYSTEM FUNCTION
Schimel, J. P., Balser, T. C., & Wallenstein, M. D. (2007) · Ecology · doi:10.1890/06-0219 · Cited by 3,055 · see citing works
The Domain-specific Probe EUB338 is Insufficient for the Detection of all Bacteria: Development and Evaluation of a more Comprehensive Probe Set
Daims, H., Brühl, A., Amann, R., SCHLEIFER, K. H., & Wagner, M. (1999) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(99)80053-8 · Cited by 2,273 · see citing works
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
Gerard Muyzer, C., Teske, A., Wirsen, C. O., & Jannasch, H. W. (1995) · Archives of Microbiology · doi:10.1007/bf02529967 · Cited by 1,112 · see citing works
Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
Dubilier, N., Bergin, C., & Lott, C. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1992 · Cited by 1,073 · see citing works
Self-citation
Geochemistry of high H2 and CH4 vent fluids issuing from ultramafic rocks at the Rainbow hydrothermal field (36°14′N, MAR)
Charlou, J., Donval, J., Fouquet, Y., Jean‐Baptiste, P., & Holm, N. G. (2002) · Chemical Geology · doi:10.1016/s0009-2541(02)00134-1 · Cited by 909 · see citing works
The winnowing: establishing the squid–vibrio symbiosis.
Nyholm, S. V., & McFall-Ngai, M. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro957 · Cited by 803 · see citing works
The Ecology of Deep-Sea Hydrothermal Vents
Dover, C. L. V. (2000) · Princeton University Press eBooks · doi:10.1515/9780691239477 · Cited by 763 · see citing works
The ecology of deep-sea hydrothermal vents
(2000) · Choice Reviews Online · doi:10.5860/choice.38-0926 · Cited by 659 · see citing works
Evolution and Biogeography of Deep-Sea Vent and Seep Invertebrates
Dover, C. L. V., German, C. R., Speer, K. G., Parson, L. M., & Vrijenhoek, R. C. (2002) · Science · doi:10.1126/science.1067361 · Cited by 585 · see citing works
Metabolic modeling of a mutualistic microbial community
Stolyar, S. M., Dien, S. V., Hillesland, K. L., Pinel, N., Lie, T. J., Leigh, J. A., & Stahl, D. A. (2007) · Molecular Systems Biology · doi:10.1038/msb4100131 · Cited by 553 · see citing works
Microbial Growth on C1 Compounds
(1996) · Springer eBooks · doi:10.1007/978-94-009-0213-8 · Cited by 439 · see citing works
Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
Inagaki, F., Takai, K., Nealson, K. H., & Horikoshi, K. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.03042-0 · Cited by 389 · see citing works
Root lectin as a determinant of host–plant specificity in the Rhizobium–legume symbiosis
Díaz, C. L., Melchers, L. S., Hooykaas, P. J. J., Lugtenberg, B. J. J., & Kijne, J. W. (1989) · Nature · doi:10.1038/338579a0 · Cited by 360 · see citing works
Geochemistry of hydrothermal fluids from the ultramafic-hosted Logatchev hydrothermal field, 15°N on the Mid-Atlantic Ridge: Temporal and spatial investigation
Schmidt, K., Koschinsky, A., Garbe‐Schönberg, D., de Carvalho, L. M., & Seifert, R. (2007) · Chemical Geology · doi:10.1016/j.chemgeo.2007.01.023 · Cited by 311 · see citing works
Variation of Microbial Rhizosphere Communities in Response to Crop Species, Soil Origin, and Inoculation with Sinorhizobium meliloti L33
Miethling, R., Wieland, G., Backhaus, H., & Tebbe, C. C. (2000) · Microbial Ecology · doi:10.1007/s002480000021 · Cited by 279 · see citing works
Reproduction and dispersal at vents and cold seeps
Tyler, P. A., & Young, C. M. (1999) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315499000235 · Cited by 229 · see citing works
Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site.
Polz, M. F., & Cavanaugh, C. M. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.16.7232 · Cited by 217 · see citing works
Polyester Wax: A New Ribboning Embedding Medium for Histology
STEEDMAN, H. F. (1957) · Nature · doi:10.1038/1791345a0 · Cited by 215 · see citing works
A single regulatory gene is sufficient to alter bacterial host range
Mandel, M. J., Wollenberg, M. S., Stabb, E. V., Visick, K. L., & Ruby, E. G. (2009) · Nature · doi:10.1038/nature07660 · Cited by 208 · see citing works
Effect of the Squid Host on the Abundance and Distribution of Symbiotic Vibrio fischeri in Nature
Lee, K., & Ruby, E. G. (1994) · Applied and Environmental Microbiology · doi:10.1128/aem.60.5.1565-1571.1994 · Cited by 206 · see citing works
A dual symbiosis shared by two mussel species, Bathymodiolus azoricus and Bathymodiolus puteoserpentis (Bivalvia: Mytilidae), from hydrothermal vents along the northern Mid‐Atlantic Ridge
Duperron, S., Bergin, C., Zielinski, F., Blazejak, A., Pernthaler, A., McKiness, Z. P., DeChaine, E. G., Cavanaugh, C. M., & Dubilier, N. (2006) · Environmental Microbiology · doi:10.1111/j.1462-2920.2006.01038.x · Cited by 205 · see citing works
Self-citation
Feeding biology of the shrimp Rimicaris exoculata at hydrothermal vents on the Mid-Atlantic Ridge
Dover, C. L. V., Fry, B., Grassle, J. F., Humphris, S. E., & Rona, P. A. (1988) · Marine Biology · doi:10.1007/bf00391196 · Cited by 160 · see citing works
Novel Forms of Structural Integration between Microbes and a Hydrothermal Vent Gastropod from the Indian Ocean
Goffredi, S. K., Warén, A., Orphan, V. J., Dover, C. L. V., & Vrijenhoek, R. C. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.5.3082-3090.2004 · Cited by 158 · see citing works
Gene Flow and Genetic Diversity in Naturally Fragmented Metapopulations of Deep-Sea Hydrothermal Vent Animals
Vrijenhoek, R. C. (1997) · Journal of Heredity · doi:10.1093/oxfordjournals.jhered.a023106 · Cited by 151 · see citing works
Chemosynthetic microbial activity at Mid‐Atlantic Ridge hydrothermal vent sites
Wirsen, C. O., Jannasch, H. W., & Molyneaux, S. J. (1993) · Journal of Geophysical Research Atmospheres · doi:10.1029/92jb01556 · Cited by 145 · see citing works
Marine Chemosynthetic Symbioses
Cavanaugh, C. M., McKiness, Z. P., Newton, I. L. G., & Stewart, F. J. (2006) · Springer eBooks · doi:10.1007/0-387-30741-9_18 · Cited by 145 · see citing works
Endosymbioses between bacteria and deep‐sea siboglinid tubeworms from an Arctic Cold Seep (Haakon Mosby Mud Volcano, Barents Sea)
Lösekann, T., Robador, A., Niemann, H., Knittel, K., Boëtius, A., & Dubilier, N. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01712.x · Cited by 144 · see citing works
Self-citation
Symbiotic conversations are revealed under genetic interrogation
Ruby, E. G. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1958 · Cited by 141 · see citing works
TWO NEW CARIDEAN SHRIMPS (BRESILIIDAE) FROM A HYDROTHERMAL FIELD ON THE MID-ATLANTIC RIDGE
Williams, A. B., & Rona, P. A. (1986) · Journal of Crustacean Biology · doi:10.1163/193724086x00299 · Cited by 140 · see citing works
Food sources, behaviour, and distribution of hydrothermal vent shrimps at the Mid-Atlantic Ridge
Gebruk, A. V., Southward, E. C., Kennedy, H. A., & SOUTHWARD, A. J. (2000) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315400002186 · Cited by 133 · see citing works
Two New Caridean Shrimps (Bresiliidae) from a Hydrothermal Field on the Mid-Atlantic Ridge
Williams, A. B., & Rona, P. A. (1986) · Journal of Crustacean Biology · doi:10.2307/1548184 · Cited by 129 · see citing works
Multiple introductions of the Spiroplasma bacterial endosymbiont into Drosophila
Haselkorn, T. S., Markow, T. A., & Moran, N. A. (2009) · Molecular Ecology · doi:10.1111/j.1365-294x.2009.04085.x · Cited by 113 · see citing works
Trophic ecology of massive shrimp aggregations at a Mid‐Atlantic Ridge hydrothermal vent site
Polz, M. F., Robinson, J. J., Cavanaugh, C. M., & Dover, C. L. V. (1998) · Limnology and Oceanography · doi:10.4319/lo.1998.43.7.1631 · Cited by 109 · see citing works
The First Internal Transcribed Spacer (ITS-1) of Ribosomal DNA as a Molecular Marker for Phylogenetic and Population Analyses in Crustacea
Chu, K. H., Li, C. P., & Ho, H.-C. (2001) · Marine Biotechnology · doi:10.1007/s10126001-0014-5 · Cited by 108 · see citing works
Marine Chemosynthetic Symbioses
(2011) · Springer eBooks · doi:10.1007/springerreference_3633 · Cited by 107 · see citing works
A New C-Type Lectin Similar to the Human Immunoreceptor DC-SIGN Mediates Symbiont Acquisition by a Marine Nematode
Bulgheresi, S., Schabussová, I., Chen, T., Mullin, N. P., Maizels, R. M., & Ott, J. A. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.4.2950-2956.2006 · Cited by 103 · see citing works
Occurrence of Deferribacterales and Entomoplasmatales in the deep-sea Alvinocarid shrimp Rimicaris exoculata gut.
Zbinden, M., & Cambon-Bonavita, M.-A. (2003) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(03)00176-4 · Cited by 101 · see citing works
Self-citation
Epibiotic bacteria associated with the recently discovered Yeti crab, Kiwa hirsuta
Goffredi, S. K., Jones, W. J., Erhlich, H., Springer, A., & Vrijenhoek, R. C. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01684.x · Cited by 96 · see citing works
The influence of ultramafic rocks on microbial communities at the Logatchev hydrothermal field, located 15°N on the Mid-Atlantic Ridge
Perner, M., Kuever, J., Seifert, R., Pape, T., Koschinsky, A., Schmidt, K., Strauß, H., & Imhoff, J. F. (2007) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2007.00325.x · Cited by 95 · see citing works
Distribution of bacteria and associated minerals in the gill chamber of the vent shrimp Rimicaris exoculata and related biogeochemical processes.
Zbinden, M., Le Bris, N., Gaill, F., & Compère, P. (2004) · Marine Ecology Progress Series · doi:10.3354/meps284237 · Cited by 95 · see citing works
Self-citation
New insigths on the metabolic diversity among the epibiotic microbial communitiy of the hydrothermal shrimp Rimicaris exoculata.
Zbinden, M., Shillito, B., Le Bris, N., de Villardi de Montlaur, C., Roussel, E., Guyot, F., Gaill, F., & Cambon-Bonavita, M.-A. (2008) · Journal of Experimental Marine Biology and Ecology · doi:10.1016/j.jembe.2008.03.009 · Cited by 89 · see citing works
Self-citation
Free-Living Tube Worm Endosymbionts Found at Deep-Sea Vents
Harmer, T. L., Rotjan, R., Nussbaumer, A. D., Bright, M., Ng, A. W., DeChaine, E. G., & Cavanaugh, C. M. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02470-07 · Cited by 78 · see citing works
Feeding specialization of bresiliid shrimps in the TAG site hydrothermal community
Gebruk, A., Pimenov, N., & Sawichev, A. (1993) · Marine Ecology Progress Series · doi:10.3354/meps098247 · Cited by 70 · see citing works
Unusual fatty acid composition of storage lipids in the bresilioid shrimp Rimicaris exoculata couples the photic zone with MAR hydrothermal vent sites
Pond, D., Gebruk, A. V., Southward, E., Southward, A., Fallick, A. E., Bell, M., & Sargent, J. (2000) · Marine Ecology Progress Series · doi:10.3354/meps198171 · Cited by 68 · see citing works
Bacterial symbionts and mineral deposits in the branchial chamber of the hydrothermal vent shrimp Rimicaris exoculata: relationship to moult cycle
Corbari, L., Zbinden, M., Cambon-Bonavita, M., Gaill, F., & Compère, P. (2008) · Aquatic Biology · doi:10.3354/ab00024 · Cited by 67 · see citing works
Self-citation
Dispersal at hydrothermal vents: a summary of recent progress
Tyler, P. A., & Young, C. M. (2003) · Hydrobiologia · doi:10.1023/b:hydr.0000008492.53394.6b · Cited by 66 · see citing works
Trophic ecology of Rimicaris exoculata : a combined lipid abundance/stable isotope approach
Rieley, G., Dover, C. L. V., Hedrick, D. B., & Eglinton, G. (1999) · Marine Biology · doi:10.1007/s002270050489 · Cited by 62 · see citing works
Off‐axis symbiosis found: characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents
DeChaine, E. G., Bates, A. E., Shank, T. M., & Cavanaugh, C. M. (2006) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.01113.x · Cited by 62 · see citing works
TEM-EELS study of natural ferrihydrite from geological–biological interactions in hydrothermal systems
Gloter, A., Zbinden, M., Guyot, F., Gaill, F., & Colliex, C. (2004) · Earth and Planetary Science Letters · doi:10.1016/j.epsl.2004.03.040 · Cited by 61 · see citing works
Self-citation
Dispersal at hydrothermal vents: a summary of recent progress
Tyler, P. A., & Young, C. M. (2003) · Springer eBooks · doi:10.1007/978-94-017-2276-6_2 · Cited by 58 · see citing works
Interactions of Deep-Sea Vent Invertebrates with Their Environment: The Case of Rimicaris exoculata
Schmidt, C., Bris, N. L., & Gaill, F. (2008) · Journal of Shellfish Research · doi:10.2983/0730-8000(2008)27[79:iodviw]2.0.co;2 · Cited by 58 · see citing works
Geochemical energy sources for microbial primary production in the environment of hydrothermal vent shrimps
Schmidt, C., Vuillemin, R., Gall, C., Gaill, F., & Bris, N. L. (2007) · Marine Chemistry · doi:10.1016/j.marchem.2007.09.009 · Cited by 52 · see citing works
Physiological and immunological evidence for two distinct C 1 -utilizing pathways in Bathymodiolus puteoserpentis (Bivalvia: Mytilidae), a dual endosymbiotic mussel from the Mid-Atlantic Ridge
Robinson, J. J., Polz, M. F., Fiala‐Médioni, A., & Cavanaugh, C. M. (1998) · Marine Biology · doi:10.1007/s002270050427 · Cited by 52 · see citing works
Molecular systematics of shrimp (Decapoda: Bresiliidae) from deep-sea hydrothermal vents, I: Enigmatic "small orange" shrimp from the Mid-Atlantic Ridge are juvenile Rimicaris exoculata.
Shank, T. M., Lutz, R., & Vrijenhoek, R. C. (1998) · PubMed · Cited by 51 · see citing works
THE HABITAT OF LEUCOTHRIX MUCOR, A WIDESPREAD MARINE MICROORGANISM
Brock, T. D. (1966) · Limnology and Oceanography · doi:10.4319/lo.1966.11.2.0303 · Cited by 47 · see citing works
Detection of the Free-Living Forms of Sulfide-Oxidizing Gill Endosymbionts in the Lucinid Habitat ( Thalassia testudinum Environment)
Gros, O., Liberge, M., Heddi, A., Khatchadourian, C., & Felbeck, H. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.10.6264-6267.2003 · Cited by 47 · see citing works
Genetic differentiation in seven geographic populations of the fleshy shrimp Penaeus (Fenneropenaeus) chinensis based on microsatellite DNA
Meng, X. H., Wang, Q. Y., Jang, I., Liu, P., & Kong, J. (2008) · Aquaculture · doi:10.1016/j.aquaculture.2008.10.030 · Cited by 45 · see citing works
Phylogeny and historical biogeography of the cave‐adapted shrimp genus Typhlatya (Atyidae) in the Caribbean Sea and western Atlantic
Hunter, R. L., Webb, M. S., Iliffe, T. M., & Bremer, J. R. A. (2007) · Journal of Biogeography · doi:10.1111/j.1365-2699.2007.01767.x · Cited by 42 · see citing works
Wax-ester reserves facilitate dispersal of hydrothermal vent shrimps
Pond, D. W., Dixon, D. R., & SARGENT, J. R. (1997) · Marine Ecology Progress Series · doi:10.3354/meps146289 · Cited by 40 · see citing works
Molecular systematics of the Kakaducarididae (Crustacea: Decapoda: Caridea)
Page, T. J., Short, J. W., Humphrey, C. L., Hillyer, M. J., & Hughes, J. M. (2008) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2007.12.020 · Cited by 40 · see citing works
Taxonomic Review of the Hydrothermal Vent Shrimp Genera Rimicaris Williams & Rona and Chorocaris Martin & Hessler (Crustacea: Decapoda: Caridea: Alvinocarididae)
Komai, T., & Segonzac, M. (2008) · Journal of Shellfish Research · doi:10.2983/0730-8000(2008)27[21:trothv]2.0.co;2 · Cited by 40 · see citing works
Genetic comparison of two populations of the deep-sea vent shrimp Rimicaris exoculata (Decapoda: Bresiliidae) from the Mid-Atlantic Ridge
Creasey, S., Rogers, A. D., & Tyler, P. A. (1996) · Marine Biology · doi:10.1007/bf00353260 · Cited by 36 · see citing works
Phylogeographic structure of the caridean shrimpPalaemon peringueyiin South Africa: further evidence for intraspecific genetic units associated with marine biogeographic provinces
Teske, P. R., Froneman, P. W., Barker, N. P., & McQuaid, C. D. (2007) · African Journal of Marine Science · doi:10.2989/ajms.2007.29.2.9.192 · Cited by 36 · see citing works
Molecular Characterization and In Situ Localization of Endosymbiotic 16S Ribosomal RNA and RuBisCO Genes in the Pogonophoran Tissue
Kimura, H., Sato, M., Sasayama, Y., & Naganuma, T. (2003) · Marine Biotechnology · doi:10.1007/s10126-002-0073-2 · Cited by 35 · see citing works
Utilization of Methane and Carbon Dioxide by Symbiotrophic Bacteria in Gills of Mytilidae (Bathymodiolus) from the Rainbow and Logachev Hydrothermal Fields on the Mid-Atlantic Ridge
Пименов, Н. В., Kalyuzhnaya, M., Khmelenina, V. N., Mityushina, L. L., & Trotsenko, Y. A. (2002) · Microbiology · doi:10.1023/a:1020519105618 · Cited by 30 · see citing works
Molecular investigations of the stalked barnacleVulcanolepas osheaiand the epibiotic bacteria from the Brothers Caldera, Kermadec Arc, New Zealand
Suzuki, Y., Suzuki, M., Tsuchida, S., Takai, K., Horikoshi, K., SOUTHWARD, A. J., Newman, W. A., & Yamaguchi, T. (2009) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315409000459 · Cited by 30 · see citing works
CO2 Fixation in Chemoautotroph-Invertebrate Symbioses: Expression of Form I and Form II RubisCO
Cavanaugh, C. M., & Robinson, J. J. (1996) · Springer eBooks · doi:10.1007/978-94-009-0213-8_38 · Cited by 25 · see citing works
Lithoheterotrophic growth and electron transfer chain components of the filamentous gliding bacteriumLeucothrix mucorDSM 2157 during oxidation of sulfur compounds
Grabovich, M. Y., Muntyan, M. S., Lebedeva, V. Y., Ustiyan, V. S., & Дубинина, Г. А. (1999) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1999.tb13772.x · Cited by 25 · see citing works
Ectosymbiosis between filamentous sulphur bacteria and a stalked barnacle (Scalpellomorpha, Neolepadinae) from the Lau Back Arc Basin, Tonga
SOUTHWARD, A. J., & Newman, W. A. (1998) · Station Biologique de Roscoff · doi:10.21411/cbm.a.7e359c6b · Cited by 25 · see citing works
The three-dimensional structure of codakine and related marine C-type lectins
Gourdine, J.-P. F., Markiv, A., & Smith‐Ravin, J. (2007) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2007.03.009 · Cited by 19 · see citing works
ENIGMA OF THE TROPHIC ADAPTATION OF THE SHRIMP ALVINOCARIDIDAE IN HYDROTHERMAL AREAS ALONG THE MID-ATLANTIC RIDGE
Segonzac, M., Desaintlaurent, M., & Casanova, B. (1993) · Cahiers de biologie marine · doi:10.21411/cbm.a.b3683e29 · Cited by 16 · see citing works
AUTOTROPHIC CO2-ASSIMILATION IN TISSUES OF PRAWN RIMICARIS-EXOCULATA FROM THE MID-ATLANTIC RIDGE HYDROTHERMAL AREA
Гальченко, В. Ф., Пименов, Н. В., Lein, A. Y., Galkin, S. V., Moskalev, L. I., & Ivanov, M. A. (1989) · Cited by 6 · see citing works

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Hydrogen is an energy source for hydrothermal vent symbioses
Petersen, J. M., Zielinski, F., Pape, T., Seifert, R., Moraru, C., Amann, R., Hourdez, S., Girguis, P. R., Wankel, S. D., Barbe, V., et al. (2011) · Nature · doi:10.1038/nature10325 · Cited by 323 · see citing works
Self-citation
Evolutionary Biology Needs Wild Microbiomes
Hird, S. M. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00725 · Cited by 241 · see citing works
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents
Müller, A. L., de Rezende, J. R., Hubert, C. R. J., Kjeldsen, K. U., Lagkouvardos, I., Berry, D., Jørgensen, B. B., & Loy, A. (2013) · The ISME Journal · doi:10.1038/ismej.2013.225 · Cited by 161 · see citing works
Dancing for Food in the Deep Sea: Bacterial Farming by a New Species of Yeti Crab
Thurber, A. R., Jones, W. J., & Schnabel, K. E. (2011) · PLoS ONE · doi:10.1371/journal.pone.0026243 · Cited by 113 · see citing works
Inorganic carbon fixation by chemosynthetic ectosymbionts and nutritional transfers to the hydrothermal vent host-shrimp Rimicaris exoculata
Ponsard, J., Cambon-Bonavita, M.-A., Zbinden, M., Lepoint, G., Joassin, A., Corbari, L., Shillito, B., Durand, L., Cueff-Gauchard, V., & Compère, P. (2013) · The ISME Journal · doi:10.1038/ismej.2012.87 · Cited by 110 · see citing works
Self-citation
Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses
Sogin, E. M., Kleiner, M., Borowski, C., Gruber‐Vodicka, H. R., & Dubilier, N. (2021) · Annual Review of Microbiology · doi:10.1146/annurev-micro-051021-123130 · Cited by 96 · see citing works
Self-citation
Recent population expansion and connectivity in the hydrothermal shrimp Rimicaris exoculata along the Mid-Atlantic Ridge
Teixeira, S., Cambon‐Bonavita, M., Serrão, E. Á., Desbruyères, D., & Arnaud‐Haond, S. (2010) · Journal of Biogeography · doi:10.1111/j.1365-2699.2010.02408.x · Cited by 92 · see citing works
Self-citation
Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata
Guri, M., Durand, L., Cueff-Gauchard, V., Zbinden, M., Crassous, P., Shillito, B., & Cambon-Bonavita, M.-A. (2012) · The ISME Journal · doi:10.1038/ismej.2011.133 · Cited by 87 · see citing works
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The gill chamber epibiosis of deep‐sea shrimp <scp> R </scp> imicaris exoculata : an in‐depth metagenomic investigation and discovery of <scp> Z </scp> etaproteobacteria
Jan, C., Petersen, J. M., Werner, J., Teeling, H., Huang, S., Glöckner, F. O., Golyshina, O. V., Dubilier, N., Golyshin, P. N., Jebbar, M., et al. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12406 · Cited by 83 · see citing works
Self-citation
Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.
Hügler, M., Petersen, J. M., Dubilier, N., Imhoff, J. F., & Sievert, S. M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016018 · Cited by 80 · see citing works
Self-citation
Indigenous ectosymbiotic bacteria associated with diverse hydrothermal vent invertebrates
Goffredi, S. K. (2010) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2010.00136.x · Cited by 80 · see citing works
Temperature elevation and Vibrio cyclitrophicus infection reduce the diversity of haemolymph microbiome of the mussel Mytilus coruscus
Li, Y., Chen, Y., Xu, J., Ding, W.-Y., Shao, A.-Q., Zhu, Y.-T., Wang, C., Liang, X., & Yang, J.-L. (2019) · Scientific Reports · doi:10.1038/s41598-019-52752-y · Cited by 59 · see citing works
Adaption to hydrogen sulfide-rich environments: Strategies for active detoxification in deep-sea symbiotic mussels, Gigantidas platifrons
Sun, Y., Wang, M., Zhong, Z., Chen, H., Wang, H., Zhou, L., Cao, L., Fu, L., Zhang, H., Lian, C., et al. (2021) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2021.150054 · Cited by 59 · see citing works
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)
Assié, A., Leisch, N., Meier, D. V., Gruber‐Vodicka, H. R., Tegetmeyer, H. E., Meyerdierks, A., Kleiner, M., Hinzke, T., Joye, S. B., Saxton, M. A., et al. (2019) · The ISME Journal · doi:10.1038/s41396-019-0508-7 · Cited by 59 · see citing works
Self-citation
Biogeography, Ecology, and Vulnerability of Chemosynthetic Ecosystems in the Deep Sea
Baker, M., Ramírez-Llodra, E., Tyler, P. A., German, C. R., Boëtius, A., Cordes, E. E., Dubilier, N., Fisher, C. R., Levin, L. A., Metaxas, A., et al. (2010) · Wiley eBooks · doi:10.1002/9781444325508.ch9 · Cited by 59 · see citing works
Self-citation
Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer
Kleiner, M., Petersen, J. M., & Dubilier, N. (2012) · Current Opinion in Microbiology · doi:10.1016/j.mib.2012.09.003 · Cited by 58 · see citing works
Self-citation
Origins and Evolutionary Flexibility of Chemosynthetic Symbionts From Deep-Sea Animals
Petersen, J. M., Wentrup, C., Verna, C., Knittel, K., & Dubilier, N. (2012) · Biological Bulletin · doi:10.1086/bblv223n1p123 · Cited by 55 · see citing works
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Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field
Schauer, R., Røy, H., Augustin, N., Gennerich, H., Peters, M., Wenzhöfer, F., Amann, R., & Meyerdierks, A. (2011) · Environmental Microbiology · doi:10.1111/j.1462-2920.2011.02530.x · Cited by 53 · see citing works
N iphargus– T hiothrix associations may be widespread in sulphidic groundwater ecosystems: evidence from southeastern R omania
Flot, J., Bauermeister, J., Brad, T., Hillebrand‐Voiculescu, A., Sarbu, S. M., & Dattagupta, S. (2013) · Molecular Ecology · doi:10.1111/mec.12461 · Cited by 52 · see citing works
Comparative transcriptome analysis of Rimicaris sp. reveals novel molecular features associated with survival in deep-sea hydrothermal vent
Zhang, J., Sun, Q.-L., Luan, Z., Lian, C., & Sun, L. (2017) · Scientific Reports · doi:10.1038/s41598-017-02073-9 · Cited by 51 · see citing works
The heart of a dragon: 3D anatomical reconstruction of the ‘scaly-foot gastropod’ (Mollusca: Gastropoda: Neomphalina) reveals its extraordinary circulatory system
Chen, C., Copley, J., Linse, K., Rogers, A. D., & Sigwart, J. D. (2015) · Frontiers in Zoology · doi:10.1186/s12983-015-0105-1 · Cited by 46 · see citing works
Free‐living bacterial communities associated with tubeworm ( R idgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent habitats at the Main Endeavour Field, Juan de Fuca Ridge
Forget, N. L., & Juniper, S. K. (2013) · MicrobiologyOpen · doi:10.1002/mbo3.70 · Cited by 45 · see citing works
A specific and widespread association between deep‐sea Bathymodiolus mussels and a novel family of Epsilonproteobacteria
Assié, A., Borowski, C., van der Heijden, K., Raggi, L., Geier, B., Leisch, N., Schimak, M. P., Dubilier, N., & Petersen, J. M. (2016) · Environmental Microbiology Reports · doi:10.1111/1758-2229.12442 · Cited by 45 · see citing works
Self-citation
Genetic Connectivity between North and South Mid-Atlantic Ridge Chemosynthetic Bivalves and Their Symbionts
van der Heijden, K., Petersen, J. M., Dubilier, N., & Borowski, C. (2012) · PLoS ONE · doi:10.1371/journal.pone.0039994 · Cited by 42 · see citing works
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Diversity and characterization of bacteria associated with the deep-sea hydrothermal vent crab Austinograea sp. comparing with those of two shallow-water crabs by 16S ribosomal DNA analysis
Zhang, N., Song, C., Wang, M., Liu, Y., Hui, M., & Cui, Z. (2017) · PLoS ONE · doi:10.1371/journal.pone.0187842 · Cited by 39 · see citing works
Epsilonproteobacteria as gill epibionts of the hydrothermal vent gastropod Cyathermia naticoides (North East-Pacific Rise)
Zbinden, M., Marqué, L., Gaudron, S. M., Ravaux, J., Léger, N., & Duperron, S. (2014) · Marine Biology · doi:10.1007/s00227-014-2591-7 · Cited by 38 · see citing works
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Rimicaris exoculata: biology and ecology of a shrimp from deep-sea hydrothermal vents associated with ectosymbiotic bacteria
Zbinden, M., & Cambon‐Bonavita, M. (2020) · Marine Ecology Progress Series · doi:10.3354/meps13467 · Cited by 38 · see citing works
Self-citation
Repeatedly Evolved Host-Specific Ectosymbioses between Sulfur-Oxidizing Bacteria and Amphipods Living in a Cave Ecosystem
Bauermeister, J., Ramette, A., & Dattagupta, S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0050254 · Cited by 35 · see citing works
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Integrative taxonomy revisits the ontogeny and trophic niches ofRimicarisvent shrimps
Methou, P., Michel, L. N., Segonzac, M., Cambon‐Bonavita, M., & Pradillon, F. (2020) · Royal Society Open Science · doi:10.1098/rsos.200837 · Cited by 34 · see citing works
Self-citation
Ontogenetic variation in epibiont community structure in the deep‐sea yeti crab,Kiwa puravida: convergence among crustaceans
Goffredi, S. K., Gregory, A., Jones, W. J., Morella, N. M., & Sakamoto, R. I. (2013) · Molecular Ecology · doi:10.1111/mec.12439 · Cited by 34 · see citing works
Gamma‐ and epsilonproteobacterial ectosymbionts of a shallow‐water marine worm are related to deep‐sea hydrothermal vent ectosymbionts
Ruehland, C., & Dubilier, N. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02256.x · Cited by 33 · see citing works
Self-citation
Linking regional variation of epibiotic bacterial diversity and trophic ecology in a new species of Kiwaidae (Decapoda, Anomura) from East Scotia Ridge (Antarctica) hydrothermal vents
Zwirglmaier, K., Reid, W. D. K., Heywood, J. L., Sweeting, C. J., Wigham, B. D., Polunin, N. V. C., Hawkes, J. A., Connelly, D. P., Pearce, D. A., & Linse, K. (2014) · MicrobiologyOpen · doi:10.1002/mbo3.227 · Cited by 33 · see citing works
Closely coupled evolutionary history of ecto‐ and endosymbionts from two distantly related animal phyla
Zimmermann, J., Wentrup, C., Sadowski, M., Blazejak, A., Gruber‐Vodicka, H. R., Kleiner, M., Ott, J. A., Cronholm, B., Wit, P. D., Erséus, C., et al. (2016) · Molecular Ecology · doi:10.1111/mec.13554 · Cited by 33 · see citing works
Self-citation
Biogeographical distribution ofRimicaris exoculataresident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites
Durand, L., Roumagnac, M., Cueff-Gauchard, V., Jan, C., Guri, M., Tessier, C., Haond, M., Crassous, P., Zbinden, M., Arnaud-Haond, S., et al. (2015) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiv101 · Cited by 32 · see citing works
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Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development
Methou, P., Hernández-Ávila, I., Aube, J., Cueff-Gauchard, V., Gayet, N., Amand, L., Shillito, B., Pradillon, F., & Cambon-Bonavita, M.-A. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00808 · Cited by 30 · see citing works
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Antimicrobial Peptides and Ectosymbiotic Relationships: Involvement of a Novel Type IIa Crustin in the Life Cycle of a Deep-Sea Vent Shrimp
Le Bloa, S., Boidin-Wichlacz, C., Cueff-Gauchard, V., Rosa, R. D., Cuvillier-Hot, V., Durand, L., Methou, P., Pradillon, F., Cambon-Bonavita, M.-A., & Tasiemski, A. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01511 · Cited by 30 · see citing works
“stages (5, 47) for early stages and (4, 33) for adults.”
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A Nematode of the Mid-Atlantic Ridge Hydrothermal Vents Harbors a Possible Symbiotic Relationship
Bellec, L., Cambon‐Bonavita, M., Cueff‐Gauchard, V., Durand, L., Gayet, N., & Zeppilli, D. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02246 · Cited by 29 · see citing works
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Gill chamber and gut microbial communities of the hydrothermal shrimp Rimicaris chacei Williams and Rona 1986: A possible symbiosis
Apremont, V., Cambon‐Bonavita, M., Cueff‐Gauchard, V., François, D., Pradillon, F., Corbari, L., & Zbinden, M. (2018) · PLoS ONE · doi:10.1371/journal.pone.0206084 · Cited by 29 · see citing works
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Microbial biofilms associated with fluid chemistry and megafaunal colonization at post-eruptive deep-sea hydrothermal vents
O’Brien, C. E., Giovannelli, D., Govenar, B., Luther, G. W., Lutz, R. A., Shank, T. M., & Vetriani, C. (2015) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/j.dsr2.2015.07.020 · Cited by 29 · see citing works
The Transcriptome of Bathymodiolus azoricus Gill Reveals Expression of Genes from Endosymbionts and Free-Living Deep-Sea Bacteria
Egas, C., Pinheiro, M. M., Gomes, P. A. M. C., Barroso, C., & Bettencourt, R. (2012) · Marine Drugs · doi:10.3390/md10081765 · Cited by 27 · see citing works
Hydrogenase Gene Distribution and H2 Consumption Ability within the Thiomicrospira Lineage
Hansen, M., & Perner, M. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00099 · Cited by 25 · see citing works
Transcriptomic approach of the response to metals in the hydrothermal mussel Bathymodiolus azoricus
del Rio, G. F. (2016) · doi:10.70675/fab70b93zd249z4083zaa15zd7d89ea8c5d4 · Cited by 25 · see citing works
Neuroanatomy of a hydrothermal vent shrimp provides insights into the evolution of crustacean integrative brain centers
Machon, J., Krieger, J., Meth, R., Zbinden, M., Ravaux, J., Montagné, N., Chertemps, T., & Harzsch, S. (2019) · eLife · doi:10.7554/elife.47550 · Cited by 24 · see citing works
Self-citation
Bacterial communities associated with lesions of two forms of shell disease in the American lobster (Homarus americanus, Milne Edwards) from Atlantic Canada
Quinn, R. A., Cawthorn, R. J., Summerfield, R. L., Smolowitz, R. M., & CHISTOSERDOV, A. Y. (2013) · Canadian Journal of Microbiology · doi:10.1139/cjm-2012-0679 · Cited by 24 · see citing works
“ Candidatus Desulfobulbus rimicarensis,” an Uncultivated Deltaproteobacterial Epibiont from the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata
Jiang, L., Liu, X., Dong, C., Huang, Z., Cambon‐Bonavita, M., Alain, K., Gu, L., Wang, S., & Shao, Z. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.02549-19 · Cited by 23 · see citing works
Self-citation
Diversity and characterization of bacterial communities of five co‐occurring species at a hydrothermal vent on the Tonga Arc
Lee, W., Juniper, S. K., Perez, M., Ju, S., & Kim, S. (2021) · Ecology and Evolution · doi:10.1002/ece3.7343 · Cited by 23 · see citing works
Northern Mid-Atlantic Ridge Hydrothermal Habitats: A Systematic Review of Knowledge Status for Environmental Management
Boschen‐Rose, R. E., & Colaço, A. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.657358 · Cited by 22 · see citing works
Supplementary Materials and Methods
Groenendijk, F. H., Zwart, W. T., Floore, A. N., Akbari, S., & Bernards, R. (2013) · Cited by 22 · see citing works
Bacterial and archaeal communities inhabiting mussels, sediment and water in Indonesian anchialine lakes
Cleary, D. F. R., & Polónia, A. R. M. (2017) · Antonie van Leeuwenhoek · doi:10.1007/s10482-017-0944-1 · Cited by 21 · see citing works
Structure and Connectivity of Hydrothermal Vent Communities Along the Mid-Ocean Ridges in the West Indian Ocean: A Review
Perez, M., Sun, J., Xu, Q., & Qian, P. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.744874 · Cited by 20 · see citing works
Carbon sources and trophic interactions of vent fauna in the Onnuri Vent Field, Indian Ocean, inferred from stable isotopes
Suh, Y. J., Kim, M., Kim, S., Kim, D., & Ju, S. (2021) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2021.103683 · Cited by 20 · see citing works
First Comparative Analysis of the Community Structures and Carbon Metabolic Pathways of the Bacteria Associated with Alvinocaris longirostris in a Hydrothermal Vent of Okinawa Trough
Sun, Q.-L., Zeng, Z., Chen, S., & Sun, L. (2016) · PLoS ONE · doi:10.1371/journal.pone.0154359 · Cited by 18 · see citing works
Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering.
Cowart, D. A., Durand, L., Cambon-Bonavita, M.-A., & Arnaud-Haond, S. (2017) · PLoS ONE · doi:10.1371/journal.pone.0172543 · Cited by 17 · see citing works
Self-citation
Comparative Analysis of Intestinal Microflora Between Two Developmental Stages of Rimicaris kairei, a Hydrothermal Shrimp From the Central Indian Ridge
Qi, L., Lian, C., Zhu, F.-C., Shi, M., & He, L. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.802888 · Cited by 17 · see citing works
Shallow-water hydrothermal vent system as an extreme proxy for discovery of microbiome significance in a crustacean holobiont
Chiu, L., Wang, M., Tseng, K.-Y., Wei, C., Lin, H., Yang, S., & Tseng, Y. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.976255 · Cited by 17 · see citing works
Unravelling Stratified Microbial Assemblages in Australia’s Only Deep Anchialine System, The Bundera Sinkhole
Elbourne, L. D. H., Sutcliffe, B., Humphreys, W. F., Focardi, A., Saccò, M., Campbell, M. A., Paulsen, I. T., & Tetu, S. G. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.872082 · Cited by 16 · see citing works
Full-length 16S rRNA amplicon sequencing reveals the variation of epibiotic microbiota associated with two shrimp species of Alvinocarididae: possibly co-determined by environmental heterogeneity and specific recognition of hosts
Hui, M., Wang, A., Cheng, J., & Sha, Z. (2022) · PeerJ · doi:10.7717/peerj.13758 · Cited by 16 · see citing works
Bacterial, archaeal, and fungal community structure and interrelationships of deep-sea shrimp intestine and the surrounding sediment
Lin, G., Huang, J., Luo, K., Lin, X., Su, M., & Lü, J. (2021) · Environmental Research · doi:10.1016/j.envres.2021.112461 · Cited by 13 · see citing works
Microbial epibiotic community of the deep-sea galatheid squat lobster Munidopsis alvisca
Leinberger, J., Milke, F., Christodoulou, M., Poehlein, A., Caraveo-Patiño, J., Teske, A., & Brinkhoff, T. (2022) · Scientific Reports · doi:10.1038/s41598-022-06666-x · Cited by 13 · see citing works
Identification and characterization of a symbiotic agglutination-related C-type lectin from the hydrothermal vent shrimp Rimicaris exoculata
Liu, X., Ye, S., Cheng, C.-Y., Li, H., Lu, B., Yang, W., & Yang, J. (2019) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2019.05.057 · Cited by 13 · see citing works
Astonishing Fungal Diversity in Deep‐Sea Hydrothermal Ecosystems: An Untapped Resource of Biotechnological Potential?
Burgaud, G., Meslet‐Cladière, L., Barbier, G., & Edgcomb, V. P. (2014) · Wiley eBooks · doi:10.1002/9783527681501.ch04 · Cited by 13 · see citing works
Highlighting of quorum sensing lux genes and their expression in the hydrothermal vent shrimp Rimicaris exoculata ectosymbiontic community. Possible use as biogeographic markers
Le Bloa, S., Durand, L., Cueff- Gauchard, V., Le Bars, J., Taupin, L., Marteau, C., Bazire, A., & Cambon-Bonavita, M.-A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0174338 · Cited by 12 · see citing works
Self-citation
Redescription of wood-associated tanaidacean Protanais birsteini (Kudinova-Pasternak, 1970) and its relationship within the Tanaididae
Błażewicz, M., Kobyłecka, E., & Jennings, R. N. (2014) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/j.dsr2.2014.10.006 · Cited by 11 · see citing works
Blow Your Nose, Shrimp! Unexpectedly Dense Bacterial Communities Occur on the Antennae and Antennules of Hydrothermal Vent Shrimp
Zbinden, M., Gallet, A., Szafrański, K. M., Machon, J., Ravaux, J., Léger, N., & Duperron, S. (2018) · Frontiers in Marine Science · doi:10.3389/fmars.2018.00357 · Cited by 11 · see citing works
Self-citation
Compositional and Functional Shifts in the Epibiotic Bacterial Community of Shinkaia crosnieri Baba & Williams (a Squat Lobster from Hydrothermal Vents) during Methane-Fed Rearing
Watsuji, T., Motoki, K., Hada, E., Nagai, Y., Takaki, Y., Yamamoto, A., Uéda, K., Toyofuku, T., Yamamoto, H., & Takai, K. (2018) · Microbes and Environments · doi:10.1264/jsme2.me18072 · Cited by 11 · see citing works
Full-Length Transcriptome Comparison Provides Novel Insights into the Molecular Basis of Adaptation to Different Ecological Niches of the Deep-Sea Hydrothermal Vent in Alvinocaridid Shrimps
Wang, A., Sha, Z., & Hui, M. (2022) · Diversity · doi:10.3390/d14050371 · Cited by 10 · see citing works
Genomic evidence for the first symbiotic Deferribacterota, a novel gut symbiont from the deep-sea hydrothermal vent shrimp Rimicaris kairei
Qi, L., Shi, M., Zhu, F.-C., Lian, C., & He, L. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1179935 · Cited by 10 · see citing works
Phylogenetic Characterization of Episymbiotic Bacteria Hosted by a Hydrothermal Vent Limpet (Lepetodrilidae, Vetigastropoda)
Bates, A. E., Harmer, T. L., Roeselers, G., & Cavanaugh, C. M. (2011) · Biological Bulletin · doi:10.1086/bblv220n2p118 · Cited by 10 · see citing works
Anatomy and Symbiosis of the Digestive System of the Vent Shrimp Rimicaris Exoculata and Rimicaris Chacei Revealed Through Imaging Approaches
Guéganton, M., Rouxel, O., Durand, L., Cueff‐Gauchard, V., Gayet, N., Pradillon, F., & Cambon‐Bonavita, M. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.903748 · Cited by 9 · see citing works
Self-citation
Shrimp Antimicrobial Peptides: A Multitude of Possibilities
Vincent, S. A., Mathew, P., & Antony, S. P. (2022) · International Journal of Peptide Research and Therapeutics · doi:10.1007/s10989-022-10459-1 · Cited by 9 · see citing works
Molecular study of bacterial diversity within the trophosome of the vestimentiferan tubeworm R idgeia piscesae
Forget, N. L., Perez, M., & Juniper, S. K. (2014) · Marine Ecology · doi:10.1111/maec.12169 · Cited by 9 · see citing works
Cold seep biogenic carbonate crust in the Levantine basin is inhabited by burrowing Phascolosoma aff. turnerae, a sipunculan worm hosting a distinctive microbiota
Rubin‐Blum, M., Shemesh, E., Goodman‐Tchernov, B., Coleman, D. F., Ben‐Avraham, Z., & Tchernov, D. (2014) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2014.04.014 · Cited by 9 · see citing works
Is the trophosome of Ridgeia piscesae monoclonal?
Perez, M., & Juniper, S. K. (2017) · Symbiosis · doi:10.1007/s13199-017-0490-7 · Cited by 9 · see citing works
Trophodynamics at the Longqi hydrothermal vent field and comparison with the East Scotia and Central Indian Ridges
Reid, W. D. K., Wigham, B. D., Marsh, L., Weston, J. N. J., Zhu, Y., & Copley, J. (2020) · Marine Biology · doi:10.1007/s00227-020-03755-1 · Cited by 9 · see citing works
Symbioses of alvinocaridid shrimps from the South West Pacific: No chemosymbiotic diets but conserved gut microbiomes
Methou, P., Cueff‐Gauchard, V., Michel, L. N., Gayet, N., Pradillon, F., & Cambon‐Bonavita, M. (2023) · Environmental Microbiology Reports · doi:10.1111/1758-2229.13201 · Cited by 8 · see citing works
Self-citation
Characterization of Bacterial Symbionts in Deep-Sea Fauna: Protocols for Sample Conditioning, Fluorescence In Situ Hybridization, and Image Analysis
Duperron, S. (2015) · Springer protocols handbooks/Springer protocols · doi:10.1007/8623_2015_73 · Cited by 8 · see citing works
Faunal and microbial biodiversity of the newly discovered Deyin-1 hydrothermal vent field at 15°S on the southern Mid-Atlantic Ridge
Dong, C., Xie, Y., Li, H., Lai, Q., Liu, X., & Shao, Z. (2019) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2019.103134 · Cited by 8 · see citing works
Bacterial communities associated with Shinkaia crosnieri from the Iheya North, Okinawa Trough: Microbial diversity and metabolic potentials
Zhang, J., Zeng, Z., Chen, S., & Sun, L. (2017) · Journal of Marine Systems · doi:10.1016/j.jmarsys.2017.02.011 · Cited by 7 · see citing works
Symbiont Acquisition Strategies in Post‐Settlement Stages of Two Co‐Occurring Deep‐Sea Rimicaris Shrimp
Guéganton, M., Methou, P., Aubé, J., Noël, C., Rouxel, O., Cueff‐Gauchard, V., Gayet, N., Durand, L., Pradillon, F., & Cambon‐Bonavita, M. (2024) · Ecology and Evolution · doi:10.1002/ece3.70369 · Cited by 6 · see citing works
Self-citation
Symbiont Community Composition in Rimicaris kairei Shrimps from Indian Ocean Vents with Notes on Mineralogy
Methou, P., Hikosaka, M., Chen, C., Watanabe, H., Miyamoto, N., Makita, H., Takahashi, Y., & Jenkins, R. G. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.00185-22 · Cited by 6 · see citing works
Testing symbiotic morphology in trilobites under dysoxic and oxic conditions from Cambrian to Early Ordovician Lagerstätten
John, D. L., & Walker, S. E. (2015) · Palaeogeography Palaeoclimatology Palaeoecology · doi:10.1016/j.palaeo.2015.10.007 · Cited by 6 · see citing works
An H-ferritin from the hydrothermal vent shrimp Rimicaris exoculata and its potential role in iron metabolism
Liu, X., Ye, S., Li, H., Lu, B., Yu, Y., Fan, Y., Yang, W., & Yang, J. (2019) · BioMetals · doi:10.1007/s10534-019-00174-8 · Cited by 6 · see citing works
Stability in flexibility: Shifting alliances stabilize the symbioses of marine animals over 150 million years
Mankowski, A., Kleiner, M., Erséus, C., Leisch, N., Sato, Y., Volland, J., Hüettel, B., Wentrup, C., Woyke, T., Wippler, J., et al. (2026) · Science Advances · doi:10.1126/sciadv.aed1476 · Cited by 5 · see citing works
Self-citation
Epibiotic bacterial community of Sphaeroma serratum (Crustacea, Isopoda): relationship with molt status
Caro, A., Escalas, A., Bouvier, C., Grousset, E., Lautrédou-Audouy, N., Roques, C., Charmantier‐Daures, M., & Gros, O. (2012) · Marine Ecology Progress Series · doi:10.3354/meps09711 · Cited by 5 · see citing works
Symbiotic Relationships
Ciancio, A. (2016) · Springer eBooks · doi:10.1007/978-94-024-0884-3_3 · Cited by 4 · see citing works
Deep‐Sea Hydrothermal Vents
Harmer, T. L. (2019) · Wiley eBooks · doi:10.1002/9781119300762.wsts0182 · Cited by 4 · see citing works
Tripartite holobiont system in a vent snail broadens the concept of chemosymbiosisPreprint
Yang, Y., Sun, J., Chen, C., Zhou, Y., Lan, Y., Dover, C. L. V., Wang, C., Qiu, J., & Qian, P. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.09.13.295170 · Cited by 4 · see citing works
Yeti crab grows its own food
Yong, E. (2011) · Nature · doi:10.1038/nature.2011.9537 · Cited by 3 · see citing works
Symbiosis
Bonfante, P., Visick, K. L., & Ohkuma, M. (2010) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2010.00168.x · Cited by 2 · see citing works
Marine Extreme Habitats
Pachiadaki, M., & Edgcomb, V. P. (2022) · The microbiomes of humans, animals, plants, and the environment · doi:10.1007/978-3-030-90383-1_14 · Cited by 2 · see citing works
Microbial Communities Surrounding an Underwater Volcano Near the Island of El Hierro (Canary Islands)
Ferrera, I., Arrieta, J. M., Sebastián, M., & Fraile‐Nuez, E. (2023) · Active volcanoes of the world · doi:10.1007/978-3-031-35135-8_10 · Cited by 2 · see citing works
Host‐Microbiome Associations in Livebearing Fishes Adapted to Toxic Environments Rich in Hydrogen Sulfide
Wilson, E., Lee, S. T. M., Zeglin, L. H., Arias‐Rodríguez, L., & Tobler, M. (2025) · Molecular Ecology · doi:10.1111/mec.70034 · Cited by 1 · see citing works
Comparative genomics of a vertically transmitted thiotrophic bacterial ectosymbiont and its close free‐living relative
Espada‐Hinojosa, S., Karthäuser, C., Srivastava, A., Schuster, L., Winter, T., de Oliveira, A. L., Schulz, F., Horn, M., Sievert, S. M., & Bright, M. (2023) · Molecular Ecology Resources · doi:10.1111/1755-0998.13889 · Cited by 1 · see citing works
Phoronids and their tubes harbor distinct microbiomes compared to surrounding sedimentPreprint
Ettinger, C. L., & Eisen, J. A. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.28.596327 · Cited by 1 · see citing works
Cycles de vie de deux crevettes hydrothermales de la dorsale médio-atlantique : Rimicaris exoculata et Rimicaris chacei
Methou, P. (2019) · theses.fr (ABES) · doi:10.70675/bf7aab7fzc361z40c2z9ac6z34c7f7b317db · Cited by 1 · see citing works
Dynamique spatiale et temporelle des communautés mircrobiennes dans les édifices hydrothermaux actifs
François, D. (2021) · theses.fr (ABES) · doi:10.70675/190dfcaez1a58z4592z8996zfe84822b493e · Cited by 1 · see citing works
Genetic Analysis of Bacterial Gene Variations in Sulfidic Springs and the Influence on Geochemistry
Headd, B. (2013)
Stress corrosion cracking behavior of quenched and tempered 2.25Cr 1Mo steel
Manzoor, T., Ahmad, E., Sarwar, M., & Iqbal, M. (2014) · IOP Conference Series Materials Science and Engineering · doi:10.1088/1757-899x/60/1/012030
Author response: Neuroanatomy of a hydrothermal vent shrimp provides insights into the evolution of crustacean integrative brain centers
Machon, J., Krieger, J., Meth, R., Zbinden, M., Ravaux, J., Montagné, N., Chertemps, T., & Harzsch, S. (2019) · eLife · doi:10.7554/elife.47550.030
Self-citation
Beyond the Surface: Evolutionary Insights into Thiothrix Symbiosis Across Extreme Habitats
Evolutionary Biology & Ecology, U. L. D. B. (., Chauveau, C. A., Boancă, F., Sarbu, S. M., Iepure, S., Flot, J., & Evolutionary Biology & Ecology, U. L. D. B. (. (2024) · Karst Science Day Symposium Proceedings. · doi:10.70655/ksd.2024.05

Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata
Guri, M., Durand, L., Cueff-Gauchard, V., Zbinden, M., Crassous, P., Shillito, B., & Cambon-Bonavita, M.-A. (2012) · The ISME Journal · doi:10.1038/ismej.2011.133 · Cited by 87 · see citing works
Self-citation
Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering.
Cowart, D. A., Durand, L., Cambon-Bonavita, M.-A., & Arnaud-Haond, S. (2017) · PLoS ONE · doi:10.1371/journal.pone.0172543 · Cited by 17 · see citing works
Self-citation
The ecology of ectosymbiosis at a Mid-Atlantic Ridge hydrothermal vent site
Polz, M. F., & Cavanaugh, C. M. (1996) · Cited by 3 · see citing works
Biogeographical distribution ofRimicaris exoculataresident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites
Durand, L., Roumagnac, M., Cueff-Gauchard, V., Jan, C., Guri, M., Tessier, C., Haond, M., Crassous, P., Zbinden, M., Arnaud-Haond, S., et al. (2015) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiv101 · Cited by 32 · see citing works
Self-citation
Reconstructing the hydrothermal shrimp Rimicaris exoculata symbiotic genomes using advanced analysis and visualization metagenomic methods
Réveillaud, J., Cueff‐Gauchard, V., Eren, A. M., & Cambon‐Bonavita, M. (2016) · HAL
Self-citation

Authors: Petersen, J. M., Ramette, A., Lott, C., Cambon‐Bonavita, M., Zbinden, M., & Dubilier, N.
Affiliations: Max Planck Institute for Marine Microbiology (DE)
Centre National de la Recherche Scientifique (FR)
Évolution Paris Seine (FR)
Corresponding author: Dubilier, Nicole
ORCID: Petersen, Jillian M.
Ramette, Alban
Lott, Christian
Cambon‐Bonavita, Marie‐Anne
Zbinden, Magali
Dubilier, Nicole
Venue: Environmental Microbiology
Publisher: Wiley
Published: 2010-08
Volume: 12
Issue: 8
Pages: 2204-2218
ISSN: 1462-2912 (ISSN-L)
1462-2920
DOI: 10.1111/j.1462-2920.2009.02129.x
OpenAlex: W2045870877
Cited by: 107
References: 79
Citations by year: 2026: 3 · 2025: 3 · 2024: 3 · 2023: 4 · 2022: 10 · 2021: 9 · 2020: 7 · 2019: 9 · 2018: 5 · 2017: 9 · 2016: 6 · 2015: 5 · 2014: 8 · 2013: 7 · 2012: 7
FWCI: 5.53
Type: journal article
Language: en
Open access: closed
Licence: onlinelibrary.wiley.com/termsAndConditions#vor (vor)
Locations: Environmental Microbiology (publishedVersion)
PubMed (publishedVersion)
HAL (submittedVersion)
Topics: Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
Keywords: Rimicaris exoculata, epibiosis, Mid-Atlantic Ridge, Gammaproteobacteria, Epsilonproteobacteria, Leucothrix mucor, sulfur-oxidizing bacteria, bacterial biogeography, host-symbiont specificity
MeSH terms: Animals, DNA, Bacterial, DNA, Mitochondrial, Gills, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Symbiosis, In Situ Hybridization, Fluorescence, Sequence Analysis, DNA, Gammaproteobacteria, Epsilonproteobacteria, Decapoda, Hydrothermal Vents

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Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma‐ and epsilonproteobacteria at four Mid‐Atlantic Ridge hydrothermal vent fields

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