The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Sustained Enzymatic Activity and Flow in Crowded Protein Droplets
Open accessPreprint — published as 10.1038/s41467-021-26532-0 · Paper page
Abstract
Living cells harvest energy from their environments to drive the chemical processes that enable life. We introduce a minimal system that operates at similar protein concentrations, metabolic densities, and length scales as living cells. This approach takes advantage of the tendency of phase-separated protein droplets to strongly partition enzymes, while presenting minimal barriers to transport of small molecules across their interface. By dispersing these microreactors in a reservoir of substrate-loaded buffer, we achieve steady states at metabolic densities that match those of the hungriest microorganisms. We further demonstrate the formation of steady pH gradients, capable of driving microscopic flows. Our approach enables the investigation of the function of diverse enzymes in environments that mimic cytoplasm, and provides a flexible platform for studying the collective behavior of matter driven far from equilibrium.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Minton, A. P. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.r100005200 · Cited by 1,474
Milo, R. (2013) · BioEssays · doi:10.1002/bies.201300066 · Cited by 614
Flagged first, then by citations
Research works printed but not linked: 80
- 10.1016/0022-2836(91)90499-V · DOI · Paper page
- 10.1038/nrmicro.2017.17 · DOI
- 2015, Nature methods, 12, 227, 10.1038/nmeth.3257 · DOI
- 10.1128/JB.00536-08 · DOI
- 10.1002/jmr.695 · DOI
- 10.1016/j.cell.2014.02.033 · DOI
- 2013, Molecular BioSystems, 9, 2344, 10.1039/c3mb70119k · DOI · Paper page
- 10.1038/nbt1270 · DOI · Paper page
- 2012, Journal of proteomics, 75, 5437, 10.1016/j.jprot.2012.06.020 · DOI
- 10.1146/annurev.biophys.37.032807.125817 · DOI
- 2014, The Journal of Physical Chemistry B, 118, 10624, 10.1021/jp506594f · DOI
- 10.1038/nrm.2017.7 · DOI
- 2018, Nature structural & molecular biology, 25, 833, 10.1038/s41594-018-0112-y · DOI
- 2020, Nature communications, 11, 1, 10.1038/s41467-019-13993-7 · DOI · Paper page
- 10.1016/j.tcb.2018.02.004 · DOI
- 10.1146/annurev-cellbio-100913-013325 · DOI · Paper page
- 10.1126/science.1172046 · DOI
- 10.1016/j.cell.2016.04.047 · DOI
- 10.1073/pnas.1821038116 · DOI
- 2018, Biophysical journal, 114, 1636, 10.1016/j.bpj.2018.02.020 · DOI
- 10.1021/acsnano.8b04304 · DOI
- 2019, Nature communications, 10, 1, 10.1038/s41467-018-07882-8 · DOI · Paper page
- 2021, Chemical Science, 12, 2794, 10.1039/D0SC06418A · DOI
- 2016, Nature chemistry, 8, 129, 10.1038/nchem.2414 · DOI
- 10.1039/c7sm01897e · DOI · Paper page
- 2019, Nature communications, 10, 1, 10.1038/s41467-018-07882-8 · DOI · Paper page
- 2020, Nature communications, 11, 1, 10.1038/s41467-019-13993-7 · DOI · Paper page
- 2018, Bioconjugate chemistry, 29, 2176, 10.1021/acs.bioconjchem.8b00369 · DOI
- R. A. Copeland , Enzymes: a practical introduction to structure, mechanism, and data analysis (John Wiley & Sons, 2000). · DOI
- 10.1021/bi201284u · DOI
- 1996, Journal of Chromatography B: Biomedical Sciences and Applications, 9th International Conference On Partitioning in Aqueous Two-Phase Systems, 680, 123
- 10.1103/PhysRevLett.115.108102 · DOI
- 10.1016/S0968-0004(01)01938-7 · DOI · Paper page
- R. Milo and R. Phillips , Cell biology by the numbers (Garland Science, 2015). · DOI
- 10.1016/0968-0004(91)90083-8 · DOI
- 10.1038/srep45127 · DOI
- 10.1016/j.cell.2014.06.051 · DOI
- 10.1093/clinchem/14.8.740 · DOI
- 2016, Process Biochemistry, 51, 1248, 10.1016/j.procbio.2016.06.001 · DOI
- 2011, Applied biochemistry and biotechnology, 165, 676, 10.1007/s12010-011-9287-y · DOI
- 1966, Journal of Biological Chemistry, 241, 1462, 10.1016/S0021-9258(18)96733-5 · DOI
- 10.1073/pnas.0802148105 · DOI
- 2018, Journal of advanced research, 13, 3, 10.1016/j.jare.2018.05.010 · DOI
- 10.1038/nature14043 · DOI
- 2021, Soft Matter, 17, 1655, 10.1039/D0SM01319F · DOI
- 2021, Physical Review Letters, 126, 028103, 10.1103/PhysRevLett.126.028103 · DOI
- 10.1038/187186a0 · DOI
- 10.1103/PhysRevLett.113.148101 · DOI
- 10.1038/s41567-021-01213-3 · DOI
- 2017, BioEssays, 39, 1600217, 10.1002/bies.201600217 · DOI · Paper page
- 2018, Nature Catalysis, 1, 616, 10.1038/s41929-018-0116-3 · DOI
- 10.1126/science.1251653 · DOI · Paper page
- 10.1098/rsfs.2015.0030 · DOI
- 10.1016/j.ceb.2003.11.009 · DOI
- 1999, Microcompartmentation and Phase Separation in Cytoplasm, International Review of Cytology, 192, 189, 10.1016/S0074-7696(08)60527-6 · DOI
- 10.1016/j.abb.2007.07.013 · DOI
- 10.1002/jps.20417 · DOI
- 10.1016/j.copbio.2014.11.022 · DOI
- 10.1016/j.tcb.2012.07.002 · DOI
- 10.1016/j.copbio.2012.11.006 · DOI
- 10.1126/science.1120499 · DOI
- 2019, Current opinion in chemical biology, 49, 97, 10.1016/j.cbpa.2018.11.021 · DOI
- 10.1021/ja3091615 · DOI
- 10.1073/pnas.1717844115 · DOI
- 10.1021/acs.nanolett.8b00717 · DOI
- 2016, Nature Physics, 13, 323
- 2017, Nature Physics, 13, 408, 10.1038/nphys3984 · DOI
- 10.1073/pnas.1902336116 · DOI · Paper page
- 10.1038/35053176 · DOI · Paper page
- 2012, Chemical Society Reviews, 41, 79, 10.1039/C1CS15211D · DOI
- 2014, Nature chemistry, 6, 527, 10.1038/nchem.1921 · DOI · Paper page
- 10.1021/acs.biochem.8b00081 · DOI
- 2017, Nature chemistry, 9, 110, 10.1038/nchem.2617 · DOI
- 2018, Nature chemistry, 10, 1154, 10.1038/s41557-018-0119-3 · DOI
- 2019, Nature nanotechnology, 14, 369, 10.1038/s41565-019-0399-9 · DOI
- 10.1038/s41563-018-0183-5 · DOI
- 2019, Angewandte Chemie, 131, 9218, 10.1002/ange.201903756 · DOI
- 2020, Journal of the American Chemical Society, 142, 2905, 10.1021/jacs.9b11468 · DOI
- 10.1073/pnas.1222321110 · DOI
- 2021, Journal of the American Chemical Society, 143, 4782, 10.1021/jacs.1c01148 · DOI
Metadata
- Authors
- Testa, A., Dindo, M., Rebane, A. A., Nasouri, B., Style, R. W., Golestanian, R., Dufresne, E. R., & Laurino, P.
- Affiliations
- ETH Zurich (CH)
- Okinawa Institute of Science and Technology Graduate University (JP)
- Max Planck Institute for Dynamics and Self-Organization (DE)
- University of Oxford (GB)
- Corresponding author
- Dufresne, Eric R.
- Laurino, Paola
- ORCID
- Venue
- Nature Communications
- Publisher
- openRxiv
- Published
- 2021-05-17
- Volume
- 12
- Issue
- 1
- Pages
- 6293-6293
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC8560906
- OpenAlex
- W3210793832
- Cited by
- 145
- References
- 2
- Citations by year
- 2026: 28 · 2025: 39 · 2024: 42 · 2023: 25 · 2022: 11
- FWCI
- 10.31
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- Nature Communications (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Institutional Repositories DataBase (IRDB) (submittedVersion, cc-by-nc-nd)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Okinawa Institute of Science and Technology Graduate University (Okinawa Institute of Science and Technology Graduate University) (submittedVersion, cc-by-nc-nd)
- Repository for Publications and Research Data (ETH Zurich) (submittedVersion, cc-by)
- ETH Zürich Research Collection (cc-by)
- Funders
- National Science Foundation
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (172824)
- Bundesministerium für Bildung und Forschung
- Max-Planck-Gesellschaft
- Okinawa Institute of Science and Technology Graduate University
- Japan Society for the Promotion of Science (19F19764, P19764)
- Topics
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Physical Sciences › Chemical Engineering › Fluid Flow and Transfer Processes › Innovative Microfluidic and Catalytic Techniques Innovation
- Keywords
- protein droplets, phase separation, enzyme activity, enzyme partitioning, substrate transport, pH gradient, microfluidic flow, far-from-equilibrium systems
- MeSH terms
- Catalysis, Humans, Hydro-Lyases, Models, Biological, Urease, Nanoparticles, Artificial Cells
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review