The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Evolution of a minimal cell
Open accessPreprint — published as 10.1038/s41586-023-06288-x · Paper page
Abstract
Possessing only essential genes, a minimal cell can reveal mechanisms and processes that are critical for the persistence and stability of life. Here, we report on how a synthetically constructed minimal cell contends with the forces of evolution compared to a non-minimized cell from which it was derived. Genome streamlining was costly, but 80% of fitness was regained in 2000 generations. Although selection acted upon divergent sets of mutations, the rates of adaptation in the minimal and non-minimal cell were equivalent. The only apparent constraint of minimization involved epistatic interactions that inhibited the evolution of cell size. Together, our findings demonstrate the power of natural selection to rapidly optimize fitness in the simplest autonomous organism, with implications for the evolution of cellular complexity.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Environmental conditions shape the nature of a minimal bacterial genome
Antczak, M., Michaelis, M., & Wass, M. N. (2019) · Nature Communications · doi:10.1038/s41467-019-10837-2 · Cited by 55
Flagged first, then by citations
Research works printed but not linked: 60
- 2017, Is cell size a spandrel?, eLife, 6, e22186, 10.7554/eLife.22186 · DOI
- 10.1186/1471-2164-15-1039 · DOI
- 2016, Genome-wide estimates of mutation rates and spectrum in Schizosaccharomyces pombe indicate CpG sites are highly mutagenic despite the absence of DNA methylation, G3 Bethesda Md, 6, 149, 10.1534/g3.115.022129 · DOI
- 2009, Selective inference in complex research, Philos. Trans. R. Soc. Math. Phys. Eng. Sci, 367, 4255
- 1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing, J. R. Stat. Soc. Ser. B Methodol, 57, 289, 10.1111/j.2517-6161.1995.tb02031.x · DOI · Paper page
- 10.1038/nrg1637 · DOI · Paper page
- 10.7554/eLife.36842 · DOI · Paper page
- 10.1038/nrmicro3239 · DOI
- 10.1016/j.gene.2005.06.012 · DOI
- 10.1016/j.cub.2012.02.032 · DOI
- 10.1016/j.jmb.2020.03.008 · DOI
- Deatherage, D. E. , and J. E. Barrick . 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol. Biol. Clifton NJ 1151:165–188. · DOI
- 2019, The role of synthetic biology in climate change mitigation, Biol. Direct, 14, 14, 10.1186/s13062-019-0247-8 · DOI
- 10.1073/pnas.1007783107 · DOI · Paper page
- 10.1093/molbev/msw224 · DOI
- 2016, MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis, Nat. Microbiol, 1, 16077, 10.1038/nmicrobiol.2016.77 · DOI
- 10.1126/science.1190719 · DOI · Paper page
- 2011, The length of adaptive walks is insensitive to starting fitness in Aspergillus nidulans, Evol. Int. J. Org. Evol, 65, 3070, 10.1111/j.1558-5646.2011.01380.x · DOI
- 10.1101/cshperspect.a023861 · DOI
- 10.1126/science.aat1168 · DOI
- 10.1098/rspb.2016.2272 · DOI
- Graffeuil, A. , B. E. Uhlin , and D. A. Cisneros . 2020. “Polar mutagenesis of bacterial transcriptional units using Cas12a.” Microbiology. · DOI
- 10.1093/molbev/msi072 · DOI · Paper page
- 10.1101/cshperspect.a018077 · DOI
- 10.1371/journal.pgen.1003663 · DOI
- 10.1073/pnas.0908456107 · DOI
- 10.1126/science.aad6253 · DOI · Paper page
- 10.7554/eLife.63910 · DOI
- 10.1007/s00239-017-9781-0 · DOI
- Kannan, K. , B. Tsvetanova , R.-Y. Chuang , V. N. Noskov , N. Assad-Garcia , L. Ma , C. A. Hutchison III , H. O. Smith , J. I. Glass , C. Merryman , J. C. Venter , and D. G. Gibson . 2016. One step engineering of the small-subunit ribosomal RNA using CRISPR/Cas9. Sci. Rep. 6. · DOI
- 10.1093/gbe/evp016 · DOI
- 2019, Minimal cells, maximal knowledge, eLife, 8, e45379, 10.7554/eLife.45379 · DOI
- 10.1534/genetics.111.128942 · DOI
- 10.1126/science.1144622 · DOI
- 10.1126/science.1173759 · DOI · Paper page
- 10.1073/pnas.91.15.6808 · DOI
- 10.1016/j.copbio.2012.05.001 · DOI
- 2021, Cell division in the archaeon Haloferax volcanii relies on two FtsZ proteins with distinct functions in division ring assembly and constriction, Nat. Microbiol, 6, 594, 10.1038/s41564-021-00894-z · DOI
- 10.1073/pnas.71.9.3649 · DOI
- 1977, DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli, J. Biol. Chem, 252, 3286, 10.1016/S0021-9258(17)40386-3 · DOI
- 2018, Evolutionary determinants of genome-wide nucleotide composition, Nat. Ecol. Evol, 2, 237, 10.1038/s41559-017-0425-y · DOI
- 10.1038/nrg.2016.104 · DOI · Paper page
- 10.1007/s00294-021-01193-0 · DOI · Paper page
- 2020, Insights into the structure, function, and dynamics of the bacterial cytokinetic FtsZ-ring, Annu. Rev. Biophys, 49, 309, 10.1146/annurev-biophys-121219-081703 · DOI
- 10.1016/j.jtbi.2009.04.018 · DOI
- 10.1128/jb.178.17.5333-5334.1996 · DOI
- 10.1016/j.mib.2003.08.001 · DOI
- 10.1146/annurev-micro-091213-112901 · DOI
- Pelletier, J. F. , L. Sun , K. S. Wise , N. Assad-Garcia , B. J. Karas , T. J. Deerinck , M. H. Ellisman , A. Mershin , N. Gershenfeld , R.-Y. Chuang , J. I. Glass , and E. A. Strychalski . 2021. Genetic requirements for cell division in a genomically minimal cell. Cell S0092867421002932. · DOI · Paper page
- 10.1126/science.aaf4557 · DOI
- 10.1038/nmeth.2089 · DOI · Paper page
- 1986, Deoxyuridine misincorporation causes sitespecific mutational lesions in the lacI gene of Escherichia coli. Mutat, Res, 162, 7
- 2015, Rapid and convergent evolution in the Glioblastoma multiforme genome, Genomics, 105, 159, 10.1016/j.ygeno.2014.12.010 · DOI
- 2016, Evolution of the insertion-deletion mutation rate across the tree of life, G3 Genes Genomes Genet, 6, 2583, 10.1534/g3.116.030890 · DOI
- 10.1073/pnas.1216223109 · DOI
- 10.1016/0022-2836(77)90128-0 · DOI
- 10.1086/285685 · DOI
- 10.1146/annurev-micro-090816-093803 · DOI
- 10.1371/journal.pone.0126210 · DOI · Paper page
- Yang, Z. 2006. Computational molecular evolution. Oxford University Press, Oxford. · DOI
Metadata
- Authors
- Moger-Reischer, R., Glass, J., Wise, K., Sun, L., Bittencourt, D., Lynch, M., & Lennon, J.
- Affiliations
- J. Craig Venter Institute (US)
- Arizona State University (US)
- Venue
- Nature
- Publisher
- openRxiv
- Published
- 2021-06-30
- Volume
- 620
- Issue
- 7972
- Pages
- 122-127
- ISSN
- 0028-0836 (ISSN-L)
- PMC
- PMC10396959
- OpenAlex
- W4383198532
- Cited by
- 116
- References
- 1
- Citations by year
- 2026: 29 · 2025: 28 · 2024: 48 · 2023: 9 · 2022: 2
- FWCI
- 18.93
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- cc-by
- Locations
- Nature (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas) (submittedVersion, cc-by-nc-nd)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- National Science Foundation (1934554, 2221237, 2022049, 1840301, 1840320, 1818344, 1442246)
- National Aeronautics and Space Administration (80NSSC20K0618 JTL, 80NSSC20K0618)
- Empresa Brasileira de Pesquisa Agropecuária (21195.002926/2019-98)
- Nuclear Safety and Security Commission
- National Institutes of Health (1s10od023501-01, R35-GM12256601)
- National Institute of General Medical Sciences (R35GM122566)
- Army Research Office (W911NF2210014, W911NF-14-1-0411, W911NF-14-1, W911NF)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Keywords
- minimal cell, synthetic biology, Mycoplasma mycoides, genome streamlining, mutation rate, fitness evolution, growth rate, cell size evolution, FtsZ, epistasis, cell division, chassis cells, endosymbionts
- MeSH terms
- Biotechnology, Cell Division, Epistasis, Genetic, Mutation, Mycoplasma mycoides, Selection, Genetic, Symbiosis, Tubulin, Genome, Bacterial, Evolution, Molecular, Genes, Essential, Cell Size, Genetic Fitness, Synthetic Biology
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review