PreprintCited by 8Calpain Protease Function and RegulationS100 Proteins and AnnexinsProtein Kinase Regulation and GTPase Signaling

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S-Acylation Regulates the Membrane Association and Activity of Calpain-5

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Gal, Jozsef, Bondada, Vimala, Mashburn, Charles B., Rodgers, David W., Croall, Dorothy E., Geddes, James W.·2022·Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

Preprint — published as 10.1016/j.bbamcr.2022.119298 · Paper page

Abstract

Calpain-5 (CAPN5) is a member of the calpain family of calcium-activated neutral thiol proteases. CAPN5 is partly membrane associated, despite its lack of a transmembrane domain. Unlike classical calpains, CAPN5 contains a C-terminal C2 domain. C2 domains often have affinity to lipids, mediating membrane association. We recently reported that the C2 domain of CAPN5 was essential for its membrane association and the activation of its autolytic activity. However, despite the removal of the C2 domain by autolysis, the N-terminal fragment of CAPN5 remained membrane associated. S-acylation, also referred to as S-palmitoylation, is a reversible post-translational lipid modification of cysteine residues that promotes membrane association of soluble proteins. In the present study several S-acylated cysteine residues were identified in CAPN5 with the acyl-PEG exchange method. Data reported here demonstrate that CAPN5 is S-acylated on up to three cysteine residues including Cys-4 and Cys-512, and likely Cys-507. The D589N mutation in a potential calcium binding loop within the C2 domain interfered with the S-acylation of CAPN5, likely preventing initial membrane association. Mutating specific cysteine residues of CAPN5 interfered with both its membrane association and the activation of CAPN5 autolysis. Taken together, our results suggest that the S-acylation of CAPN5 is critical for its membrane localization which appears to favor its enzymatic activity.

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  1. 10.1152/physrev.00029.2002 · DOI
  2. 2021, The C2 domain of calpain 5 contributes to enzyme activation and membrane localization, Biochim Biophys Acta Mol Cell Res, 1868, 119019, 10.1016/j.bbamcr.2021.119019 · DOI
  3. 10.1093/cvr/cvs163 · DOI
  4. 10.1016/j.bbapap.2011.08.005 · DOI
  5. 10.1016/0014-5793(95)00691-2 · DOI
  6. 10.1186/gb-2007-8-6-218 · DOI
  7. 2012, The atypical calpains: evolutionary analyses and roles in Caenorhabditis elegans cellular degeneration, PLoS genetics, 8, e1002602, 10.1371/journal.pgen.1002602 · DOI
  8. 2015, Bacterial calpains and the evolution of the calpain (C2) family of peptidases, Biol Direct, 10, 66, 10.1186/s13062-015-0095-0 · DOI
  9. 10.1016/j.bbamem.2014.01.008 · DOI
  10. 10.1128/MCB.00992-06 · DOI
  11. 2020, CAPN6 in disease: An emerging therapeutic target (Review), Int J Mol Med, 46, 1644
  12. 10.1006/geno.1997.4870 · DOI
  13. 2013, Calpain-6 deficiency promotes skeletal muscle development and regeneration, PLoS genetics, 9, e1003668, 10.1371/journal.pgen.1003668 · DOI
  14. 2012, Calpain-5 mutations cause autoimmune uveitis, retinal neovascularization, and photoreceptor degeneration, PLoS genetics, 8, e1003001, 10.1371/journal.pgen.1003001 · DOI
  15. G. Velez , A.G. Bassuk , K.A. Schaefer , B. Brooks , L. Gakhar , M. Mahajan , P. Kahn , S.H. Tsang , P.J. Ferguson , V.B. Mahajan , A novel de novo CAPN5 mutation in a patient with inflammatory vitreoretinopathy, hearing loss, and developmental delay, Cold Spring Harb Mol Case Stud 4(3) (2018). · DOI
  16. 10.1371/journal.pone.0122352 · DOI
  17. B. Randazzo Nm Mbbch , M.E.P. Shanks , F. Clouston P PhD, D.F. MacLaren Re Mb ChB, Two Novel CAPN5 Variants Associated with Mild and Severe Autosomal Dominant Neovascular Inflammatory Vitreoretinopathy Phenotypes, Ocul Immunol Inflamm (2017) 1-6. · DOI
  18. 10.1006/bbrc.1997.7571 · DOI
  19. 10.1074/jbc.M114.575159 · DOI
  20. 2016, Calpain-5 Expression in the Retina Localizes to Photoreceptor Synapses, Invest Ophthalmol Vis Sci, 57, 2509, 10.1167/iovs.15-18680 · DOI
  21. 10.1021/acs.jproteome.7b00025 · DOI
  22. 10.1016/j.jprot.2016.01.016 · DOI · Paper page
  23. 10.1016/j.bbrc.2004.09.012 · DOI
  24. 2015, SwissPalm: Protein Palmitoylation database, F1000Res, 4, 261, 10.12688/f1000research.6464.1 · DOI
  25. 10.1091/mbc.9.3.585 · DOI
  26. 10.1152/physrev.00032.2014 · DOI
  27. 10.1080/10409238.2018.1488804 · DOI
  28. 10.1074/jbc.272.50.31362 · DOI
  29. 10.1073/pnas.1612254114 · DOI
  30. 10.1021/bi00352a021 · DOI
  31. 10.1038/nrm2084 · DOI
  32. 10.1080/09687680802620369 · DOI
  33. 10.1073/pnas.1602244113 · DOI
  34. 10.1073/pnas.77.7.3898 · DOI
  35. 2014, Regulation of TET protein stability by calpains, Cell reports, 6, 278, 10.1016/j.celrep.2013.12.031 · DOI
  36. 1988, Use of simian virus 40 replication to amplify Epstein-Barr virus shuttle vectors in human cells, Journal of virology, 62, 3738, 10.1128/jvi.62.10.3738-3746.1988 · DOI
  37. 10.1016/0014-5793(87)80828-1 · DOI
  38. 10.1016/0014-5793(96)00775-2 · DOI
  39. 10.1128/MCB.02243-05 · DOI
  40. 10.1007/s002329900181 · DOI
  41. 10.1093/protein/gzn039 · DOI · Paper page
  42. 10.1186/1471-2105-7-458 · DOI
  43. 10.1371/journal.pone.0089246 · DOI
  44. 10.1371/journal.pone.0179529 · DOI
  45. 2016, GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites, Scientific reports, 6, 28249, 10.1038/srep28249 · DOI
  46. 10.1016/j.ejcb.2011.09.013 · DOI
  47. 10.1016/j.neuron.2004.12.005 · DOI
  48. 2020, ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom, BMC Bioinformatics, 21, 490, 10.1186/s12859-020-03749-2 · DOI
  49. 2017, Post translational modification of Parkin, Biol Direct, 12, 6, 10.1186/s13062-017-0176-3 · DOI
  50. 10.1006/jmbi.1990.9999 · DOI · Paper page
  51. 10.1093/nar/gkv1189 · DOI · Paper page
  52. 10.1016/j.tibs.2007.03.007 · DOI
  53. L. Zhao , J.A. Shah , Y. Cai , J. Jin , ’O-GlcNAc Code’ Mediated Biological Functions of Downstream Proteins, Molecules 23(8) (2018). · DOI
  54. 10.1111/j.1365-2958.2009.06639.x · DOI
  55. 2020, Structural Insights into the Unique Activation Mechanisms of a Non-classical Calpain and Its Disease-Causing Variants, Cell reports, 30, 881, 10.1016/j.celrep.2019.12.077 · DOI
  56. 2017, Stochastic palmitoylation of accessible cysteines in membrane proteins revealed by native mass spectrometry, Nature communications, 8, 1280, 10.1038/s41467-017-01461-z · DOI
  57. 10.1042/BJ20120921 · DOI
  58. 10.1093/nar/gky427 · DOI
  59. 10.1093/nar/gkw1132 · DOI
  60. K. Tunyasuvunakool , J. Adler , Z. Wu , T. Green , M. Zielinski , A. Zidek , A. Bridgland , A. Cowie , C. Meyer , A. Laydon , S. Velankar , G.J. Kleywegt , A. Bateman , R. Evans , A. Pritzel , M. Figurnov , O. Ronneberger , R. Bates , S.A.A. Kohl , A. Potapenko , A.J. Ballard , B. Romera-Paredes , S. Nikolov , R. Jain , E. Clancy , D. Reiman , S. Petersen , A.W. Senior , K. Kavukcuoglu , E. Birney , P. Kohli , J. Jumper , D. Hassabis , Highly accurate protein structure prediction for the human proteome, Nature 596(7873) (2021) 590-596. · DOI · Paper page
  61. 10.1016/j.bbalip.2006.03.010 · DOI
  62. 2021, Characterization of mitochondrial calpain-5, Biochim Biophys Acta Mol Cell Res, 1868, 118989, 10.1016/j.bbamcr.2021.118989 · DOI
  63. 2019, SwissPalm 2: Protein S-Palmitoylation Database, Methods in molecular biology (Clifton, N.J, 2009, 203
  64. 2015, Systems Analysis of Protein Fatty Acylation in Herpes Simplex Virus-Infected Cells Using Chemical Proteomics, Chemistry & biology, 22, 1008, 10.1016/j.chembiol.2015.06.024 · DOI
  65. 2015, Quantitative analysis of the human T cell palmitome, Scientific reports, 5, 11598, 10.1038/srep11598 · DOI
  66. 10.1161/CIRCRESAHA.112.269514 · DOI
  67. 10.1161/ATVBAHA.113.302848 · DOI
  68. 10.1021/acs.analchem.8b00534 · DOI
  69. 10.4161/adip.22117 · DOI
  70. 2017, Global, site-specific analysis of neuronal protein S-acylation, Scientific reports, 7, 4683, 10.1038/s41598-017-04580-1 · DOI
  71. 10.1016/j.chembiol.2013.09.018 · DOI
  72. R. Kang , J. Wan , P. Arstikaitis , H. Takahashi , K. Huang , A.O. Bailey , J.X. Thompson , A.F. Roth , R.C. Drisdel , R. Mastro , W.N. Green , J.R. Yates , 3rd, N.G. Davis, A. El-Husseini, Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation, Nature 456(7224) (2008) 904-9. · DOI
  73. 10.1021/acs.analchem.9b01520 · DOI
  74. 2010, Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes, Molecular & cellular proteomics: MCP, 9, 54, 10.1074/mcp.M800448-MCP200 · DOI
  75. 10.1016/j.cell.2008.01.017 · DOI
  76. 1992, Is calpain activity regulated by membranes and autolysis or by calcium and calpastatin?, BioEssays: news and reviews in molecular, cellular and developmental biology, 14, 549, 10.1002/bies.950140810 · DOI
  77. 10.1186/s12915-014-0091-3 · DOI
  78. 10.1016/j.chembiol.2015.06.010 · DOI · Paper page
  79. 2016, Bioorthogonal Chemical Reporters for Monitoring Unsaturated Fatty-Acylated Proteins, Chembiochem, 17, 1800, 10.1002/cbic.201600213 · DOI
  80. 10.1111/tra.12510 · DOI
  81. 10.1194/jlr.R600007-JLR200 · DOI
  82. 10.1091/mbc.E08-09-0944 · DOI
  83. 10.1074/jbc.M802140200 · DOI
  84. 10.1038/nchembio834 · DOI · Paper page
  85. 10.1021/bi00011a039 · DOI
  86. P. Weber , H. Batoulis , K.M. Rink , S. Dahlhoff , K. Pinkwart , T.H. Sollner , T. Lang , Electrostatic anchoring precedes stable membrane attachment of SNAP25/SNAP23 to the plasma membrane, eLife 6 (2017). · DOI
  87. 10.1016/j.bbamem.2011.07.009 · DOI
  88. 10.1371/journal.pcbi.1004774 · DOI
  89. 2021, Palmitoylation targets the calcineurin phosphatase to the phosphatidylinositol 4-kinase complex at the plasma membrane, Nature communications, 12, 6064, 10.1038/s41467-021-26326-4 · DOI
  90. 10.1006/bbrc.1996.1174 · DOI
  91. 10.1016/0014-5793(96)00362-6 · DOI
  92. 10.1016/S0006-3495(98)77529-0 · DOI
  93. 10.1016/j.ejcb.2018.03.005 · DOI
  94. 10.1016/S0014-5793(98)00856-4 · DOI
  95. 10.1007/s10495-009-0405-z · DOI
  96. 10.1016/S0166-2236(99)01479-4 · DOI
  97. 10.1016/j.jmb.2018.01.013 · DOI

Metadata

Authors
Gal, J., Bondada, V., Mashburn, C. B., Rodgers, D. W., Croall, D. E., & Geddes, J. W.
Affiliations
  • University of Kentucky (US)
  • University of Maine (US)
  • University of Kentucky HealthCare (US)
Corresponding author
Geddes, James W.
Venue
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
Publisher
openRxiv
Published
2022-01-26
Volume
1869
Issue
9
Pages
119298-119298
ISSN
0167-4889 (ISSN-L)
OpenAlex
W4281566614
Cited by
8
References
1
Citations by year
2026: 3 · 2025: 2 · 2024: 1 · 2023: 2
FWCI
0.67
Type
journal article
Language
en
Open access
Locations
  • Biochimica et Biophysica Acta (BBA) - Molecular Cell Research (publishedVersion)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed (publishedVersion)
Funders
  • University of Kentucky
  • National Institutes of Health
  • National Institute of Neurological Disorders and Stroke (R01NS095229)
  • Brain Injury Research Center
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Calpain Protease Function and Regulation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › S100 Proteins and Annexins
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
Keywords
CAPN5, S-acylation, S-palmitoylation, C2 domain, membrane association, autolysis, cysteine residues, calcium-binding loop, post-translational lipid modification
MeSH terms
Acylation, Calcium, Calpain, Cysteine, Lipoylation

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