The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
An interaction between β’-COP and the ArfGAP, Glo3, maintains post-Golgi cargo recycling
Open accessPreprint — published as 10.1083/jcb.202008061 · Paper page
Abstract
The essential COPI vesicular coat mediates retrieval of key transmembrane proteins at the Golgi and endosomes following recruitment by the small GTPase, Arf1. ArfGAP proteins regulate COPI coats, but molecular details for COPI recognition by ArfGAP proteins remain elusive. Biochemical and biophysical data reveal how β’-COP propeller domains directly engage the yeast ArfGAP, Glo3, with a low micromolar binding affinity (K D ~1 µM). Calorimetry data demonstrate both β’-COP propeller domains are required to bind Glo3 using electrostatic interactions. An acidic patch on β’-COP (D437/D450) interacts with Glo3 lysine residues located within the BoCCS (Binding of Coatomer, Cargo, and SNAREs) region. Targeted point mutations in either Glo3 BoCCS or β’-COP abrogate the interaction in vitro , and loss of the β’-COP/Glo3 interaction drives Ste2 mis-sorting to the vacuole and aberrant Golgi morphology in budding yeast. Together, these data suggest cells require the β’-COP/Glo3 interaction for cargo recycling via endosomes and the TGN, where β’-COP may serve as a molecular platform to coordinate binding to multiple protein partners, including Glo3, Arf1, and the COPI F-subcomplex.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 66
- 10.1080/0968768031000122548 · DOI
- 10.1016/j.ceb.2014.04.009 · DOI
- Arakel, E. C. & Schwappach, B. Formation of COPI-coated vesicles at a glance. J Cell Sci 131, (2018). · DOI
- 10.1101/cshperspect.a005231 · DOI
- 10.1038/ncb2273 · DOI
- Xu, P. et al. COPI mediates recycling of an exocytic SNARE by recognition of a ubiquitin sorting signal. Elife 6, (2017). · DOI
- 10.1371/journal.pbio.0060292 · DOI
- Auld, D. S. et al. COPI Complex Is a Regulator of Lipid Homeostasis. PLoS Biol 6, (2008). · DOI
- 10.1128/JVI.05810-11 · DOI
- 10.1038/nature06928 · DOI
- 10.1038/msb.2011.7 · DOI
- 2018, A FACS-Based Genome-wide CRISPR Screen Reveals a Requirement for COPI in Chlamydia trachomatis Invasion, iScience, 11, 71
- 10.1093/hmg/ddx362 · DOI
- 10.1111/jcmm.14398 · DOI
- 1986, Structural and functional dissection of an MHC class I antigen-binding adenovirus glycoprotein, EMBO J, 5, 1921, 10.1002/j.1460-2075.1986.tb04445.x · DOI
- 1997, A sorting motif localizes the foamy virus glycoprotein to the endoplasmic reticulum, J. Virol, 71, 778, 10.1128/jvi.71.1.778-784.1997 · DOI
- 10.1083/jcb.124.6.883 · DOI
- 10.1007/PL00006521 · DOI
- 10.1016/j.cell.2012.01.015 · DOI
- 10.1126/science.aab1121 · DOI
- Dodonova, S. O. et al. 9Å structure of the COPI coat reveals that the Arf1 GTPase occupies two contrasting molecular environments. Elife 6, (2017). · DOI
- Bykov, Y. S. et al. The structure of the COPI coat determined within the cell. Elife 6, (2017). · DOI
- 10.1101/2020.01.28.922591 · DOI
- 10.1038/nsmb.2467 · DOI
- 2018, Subtomogram averaging of COPII assemblies reveals how coat organization dictates membrane shape, Nat. Comm, 9, 4154, 10.1038/s41467-018-06577-4 · DOI
- 10.1016/j.devcel.2012.10.017 · DOI
- 10.1038/emboj.2013.41 · DOI
- 10.1083/jcb.200206015 · DOI
- 10.1091/mbc.E04-04-0316 · DOI
- 10.1083/jcb.200404008 · DOI
- 10.1091/mbc.E05-09-0832 · DOI
- 10.1111/j.1600-0854.2009.00952.x · DOI
- 10.1073/pnas.1432391100 · DOI
- 10.1093/emboj/18.3.555 · DOI
- 10.1093/emboj/18.3.555 · DOI
- 10.1242/jcs.232124 · DOI
- 10.1091/mbc.E08-10-1010 · DOI
- 10.1016/j.molcel.2013.06.014 · DOI
- 10.1038/415141a · DOI
- 10.1111/j.1600-0854.2004.00158.x · DOI
- 10.1038/nsmb736 · DOI
- 10.1111/j.1600-0854.2011.01321.x · DOI
- 10.1111/tra.12457 · DOI
- 10.1007/s10930-018-9785-7 · DOI
- 2022, Biochemical basis for an interaction between SNX27 and the flexible SNX1 N-terminus, Adv. Biol. Regul, 83, 100842, 10.1016/j.jbior.2021.100842 · DOI
- 2022, SNX27-Retromer directly binds ESCPE-1 to transfer cargo proteins during endosomal recycling, PLoS Biol, 20, e3001601, 10.1371/journal.pbio.3001601 · DOI · Paper page
- Yong, X. et al. SNX27-FERM-SNX1 complex structure rationalizes divergent trafficking pathways by SNX17 and SNX27. Proc Natl Acad Sci U S A 118, (2021). · DOI
- 1990, Identification of a consensus motif for retention of transmembrane proteins in the endoplasmic reticulum, EMBO J, 9, 3153, 10.1002/j.1460-2075.1990.tb07513.x · DOI
- 10.1016/0092-8674(94)90011-6 · DOI
- 1994, The KKXX signal mediates retrieval of membrane proteins from the Golgi to the ER in yeast, Eur J Cell Biol, 64, 211
- 2015, The yeast Arf-GAP Glo3p is required for the endocytic recycling of cell surface proteins, Biochim Biophys Acta Biophys. acta, 1853, 144, 10.1016/j.bbamcr.2014.10.009 · DOI
- 10.1083/jcb.152.5.935 · DOI
- 10.1091/mbc.E06-08-0756 · DOI
- 1999, Yeast ER-Golgi v-SNAREs Bos1p and Bet1p differ in steady-state localization and targeting, J Cell Sci, 112, 4135, 10.1242/jcs.112.22.4135 · DOI
- 10.1073/pnas.97.3.1096 · DOI
- 10.1111/j.1600-0854.2011.01289.x · DOI
- 2021, The Glo3 GAP crystal structure supports the molecular niche model for ArfGAPs in COPI coats, Adv. Biol. Regul, 79, 100781, 10.1016/j.jbior.2020.100781 · DOI
- 10.1016/j.cell.2010.05.006 · DOI
- 10.1016/j.cell.2012.12.042 · DOI
- 10.1083/jcb.200112092 · DOI
- 10.1126/science.282.5392.1327 · DOI
- 10.1093/nar/gkz268 · DOI · Paper page
- 10.1093/nar/gki390 · DOI
- 2021, Applying and improving AlphaFold at CASP14, Proteins, 89, 1711, 10.1002/prot.26257 · DOI
- 10.1101/2021.08.15.456425 · DOI · Paper page
- 2009, A new generation of homology search tools based on probabilistic inference, Genome Informatics, 23, 205
Metadata
- Authors
- Xie, B., Guillem, C., Jung, C., Kendall, A. K., Date, S., Best, J. T., Graham, T. R., & Jackson, L. P.
- Affiliations
- Vanderbilt University (US)
- Corresponding author
- Jackson, Lauren P.
- ORCID
- Venue
- The Journal of Cell Biology
- Publisher
- openRxiv
- Published
- 2022-05-26
- Volume
- 222
- Issue
- 4
- ISSN
- 0021-9525 (ISSN-L)
- PMC
- PMC9960064
- OpenAlex
- W4321492109
- Cited by
- 6
- References
- 1
- Citations by year
- 2026: 4 · 2025: 1 · 2023: 1
- FWCI
- 0.86
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- cc-by-nc-sa
- Locations
- The Journal of Cell Biology (publishedVersion, cc-by-nc-sa)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion, cc-by-nc-sa)
- PubMed (publishedVersion)
- Funders
- Pew Charitable Trusts
- National Institutes of Health
- National Institute of General Medical Sciences (T32GM008320, R01GM118452, R35GM119525, R35GM144123)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Keywords
- beta-COP, ArfGAP, COPI coat, Arf1, protein-protein interaction, endosomes, trans-Golgi network, Golgi morphology, Saccharomyces cerevisiae
- MeSH terms
- Golgi Apparatus, Saccharomyces cerevisiae, GTPase-Activating Proteins, Coat Protein Complex I, Coatomer Protein, ADP-Ribosylation Factor 1, Saccharomyces cerevisiae Proteins, SNARE Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review