PreprintCited by 6Cellular transport and secretionPlant Stress Responses and TolerancePlant Molecular Biology Research

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Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis

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Preprint — published as 10.1083/jcb.202311125

Abstract

Plants often adapt to adverse or stress conditions via differential growth. The trans-Golgi Network (TGN) has been implicated in stress responses, but it is not clear in what capacity it mediates adaptive growth decisions. In this study, we assess the role of the TGN in stress responses by exploring the interactome of the Transport Protein Particle II (TRAPPII) complex, required for TGN structure and function. We identified physical and genetic interactions between TRAPPII and shaggy-like kinases (GSK3/AtSKs). Kinase assays and pharmacological inhibition provided in vitro and in vivo evidence that AtSKs target the TRAPPII-specific subunit AtTRS120/TRAPPC9. GSK3/AtSK phosphorylation sites in AtTRS120/TRAPPC9 were mutated, and the resulting AtTRS120 phosphovariants subjected to a variety of single and multiple stress conditions in planta . The non-phosphorylatable TRS120 mutant exhibited enhanced adaptation to multiple stress conditions and to osmotic stress whereas the phosphomimetic version was less resilient. Higher order inducible trappii atsk mutants had a synthetically enhanced defect in root gravitropism. Our results suggest that the TRAPPII phosphostatus mediates adaptive responses to abiotic cues. AtSKs are multifunctional kinases that integrate a broad range of signals. Similarly, the TRAPPII interactome is vast and considerably enriched in signaling components. An AtSK-TRAPPII interaction would integrate all levels of cellular organization and instruct the TGN, a central and highly discriminate cellular hub, as to how to mobilize and allocate resources to optimize growth and survival under limiting or adverse conditions.

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Research works printed but not linked: 87

  1. 10.1002/cppb.20067 · DOI
  2. 10.1111/tpj.12023 · DOI
  3. 10.1016/S1369-5266(00)00204-1 · DOI
  4. 10.1083/jcb.152.3.531 · DOI
  5. 10.1126/sciadv.abn7446 · DOI
  6. 10.1073/pnas.1309057110 · DOI
  7. 10.1111/tra.12200 · DOI
  8. 10.1083/jcb.200505145 · DOI
  9. 10.1038/s41467-021-26165-3 · DOI
  10. 2008, MaxQuant enables high peptide identification rates, individualized p, p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol, 26, 1367
  11. 10.1021/pr101065j · DOI
  12. 10.1104/pp.103.027979 · DOI
  13. 2022, The TOR complex controls ATP levels to regulate actin cytoskeleton dynamics in Arabidopsis, Proc Natl Acad Sci USA, 119, e2122969119, 10.1073/pnas.2122969119 · DOI
  14. Darwin C (1880) The power of movement in plants London: John Murray · DOI
  15. 10.1038/ncb2208 · DOI · Paper page
  16. 10.3390/ijms21051664 · DOI
  17. Elliott L , Moore I & Kirchhelle C (2020) Spatio-temporal control of post-Golgi exocytic trafficking in plants. J Cell Sci 133: jcs237065 · DOI
  18. 10.1038/415806a · DOI · Paper page
  19. 2021, Cryo-EM structure of metazoan TRAPPIII, the multi-subunit complex that activates the GTPase Rab1, EMBO J, 40, e107608, 10.15252/embj.2020107608 · DOI
  20. 10.1105/tpc.20.00044 · DOI
  21. 10.1177/1059712311409446 · DOI
  22. 10.1007/s00709-014-0693-1 · DOI
  23. 10.1105/tpc.113.112482 · DOI
  24. 10.1073/pnas.1018371108 · DOI
  25. 10.1242/dev.057331 · DOI
  26. 10.1111/j.1469-8137.2010.03331.x · DOI
  27. 10.1186/gb-2007-8-5-r90 · DOI
  28. 2022, A role for brassinosteroid signalling in decision-making processes in the Arabidopsis seedling, PLoS Genet, 18, e1010541, 10.1371/journal.pgen.1010541 · DOI
  29. 10.1111/tpj.14442 · DOI
  30. 2018, A judgment and decision-making model for plant behavior, Ecology, 99, 1909, 10.1002/ecy.2418 · DOI
  31. 2016, TRAPP Complexes in Secretion and Autophagy, Front Cell Dev Biol, 4, 20
  32. 10.1104/pp.110.168963 · DOI
  33. 10.1038/nature10794 · DOI
  34. 2023, Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics, Plant Cell, 35, 975, 10.1093/plcell/koad013 · DOI
  35. 2021, Auxin and Root Gravitropism: Addressing Basic Cellular Processes by Exploiting a Defined Growth Response, Int J Mol Sci, 22, 2749, 10.3390/ijms22052749 · DOI
  36. 10.1007/s00425-005-0216-6 · DOI
  37. 2021, GSK3s: nodes of multilayer regulation of plant development and stress responses, Trends Plant Sci, 26, 1286, 10.1016/j.tplants.2021.07.017 · DOI
  38. 10.1104/pp.127.1.14 · DOI
  39. 2023, The plant trans-Golgi network component ECHIDNA regulates defense, cell death, and endoplasmic reticulum stress, Plant Physiol, 191, 558, 10.1093/plphys/kiac400 · DOI
  40. 2020, Molecular Mechanisms of Brassinosteroid-Mediated Responses to Changing Environments in Arabidopsis, Int J Mol Sci, 21, 2737, 10.3390/ijms21082737 · DOI
  41. 10.1093/bioinformatics/btq054 · DOI · Paper page
  42. 10.1105/tpc.106.040980 · DOI
  43. 10.1093/pcp/pct129 · DOI
  44. 2022, Structural basis for assembly of TRAPPII complex and specific activation of GTPase Ypt31/32, Sci Adv, 8, eabi5603, 10.1126/sciadv.abi5603 · DOI
  45. 10.1038/ncb1489 · DOI
  46. 10.1093/pcp/pcu012 · DOI
  47. 10.1093/nar/gky1106 · DOI
  48. 10.1371/journal.pgen.1008557 · DOI
  49. 10.1073/pnas.1419168112 · DOI
  50. 10.1242/jcs.241141 · DOI
  51. 10.1242/dev.151894 · DOI
  52. 10.1111/j.1365-313X.2011.04862.x · DOI
  53. 10.1111/j.1365-313X.2011.04681.x · DOI
  54. 10.4161/psb.6.11.17915 · DOI
  55. 10.1242/dev.169201 · DOI
  56. 10.1016/j.pbi.2017.08.009 · DOI
  57. 10.1083/jcb.201705068 · DOI
  58. 2018, Plant TGN in the stress response: a compartmentalized overview, Curr Opin Plant Biol, 46, 122, 10.1016/j.pbi.2018.09.003 · DOI
  59. 10.1105/tpc.19.00110 · DOI
  60. 10.1016/j.devcel.2014.04.029 · DOI
  61. Sambrook J , Fritsch EF & Maniatis T (1989) Molecular Cloning: A Laboratory Manual Cold Spring Harbor Laboratory Press
  62. 10.1105/tpc.105.039834 · DOI
  63. 10.1046/j.1365-313x.1998.00237.x · DOI
  64. 10.1126/science.1071006 · DOI
  65. 2021, Plants make smart decisions in complex environments, Plant Signal Behav, 16, 1970448, 10.1080/15592324.2021.1970448 · DOI
  66. 10.1074/mcp.RA117.000543 · DOI
  67. 10.1021/pr5006636 · DOI
  68. 10.1038/nprot.2006.468 · DOI
  69. 10.1104/pp.004184 · DOI
  70. 2023, Regulatory network of GSK3-like kinases and their role in plant stress response, Front Plant Sci, 14, 1123436, 10.3389/fpls.2023.1123436 · DOI
  71. 10.1111/tpj.13275 · DOI
  72. 10.1093/nar/gkm965 · DOI
  73. 10.1038/ncb2151 · DOI
  74. 10.1104/pp.110.154286 · DOI
  75. 10.1083/jcb.201608123 · DOI
  76. 10.1105/tpc.107.056069 · DOI
  77. 10.1038/nprot.2016.136 · DOI
  78. 10.1038/nmeth.3901 · DOI · Paper page
  79. 10.1093/pcp/pcw149 · DOI
  80. 10.4161/psb.21307 · DOI
  81. 10.1093/NAR/GKAB1061 · DOI · Paper page
  82. 10.1038/nature04681 · DOI
  83. 10.1093/jxb/err060 · DOI
  84. 10.1104/pp.109.138099 · DOI
  85. 10.1016/j.molp.2014.12.006 · DOI
  86. 2023, ZmBET5L1 inhibits primary root growth and decreases osmotic stress tolerance by mediating vesicle aggregation and tethering in maize, Plant Cell Environ, 46, 975, 10.1111/pce.14517 · DOI
  87. 10.1105/tpc.006981 · DOI

Metadata

Authors
Wiese, C., Abele, M., Al, B., Altmann, M., Steiner, A., Kalbfuß, N., Strohmayr, A., Ravikumar, R., Park, C. H., Brunschweiger, B., Meng, C., Facher, E., Ehrhardt, D. W., Falter-Braun, P., Wang, Z.-Y., Ludwig, C., & Assaad, F. F.
Affiliations
  • Technical University of Munich (DE)
  • Helmholtz Munich (DE)
  • Carnegie Institution for Science (US)
  • Ludwig-Maximilians-Universität München (DE)
Corresponding author
Wiese, Christian
Venue
The Journal of Cell Biology
Publisher
openRxiv
Published
2023-04-26
Volume
223
Issue
5
ISSN
0021-9525 (ISSN-L)
OpenAlex
W4393386649
Cited by
6
References
1
Citations by year
2026: 2 · 2025: 3 · 2024: 1
FWCI
1.34
Type
journal article
Language
en
Open access
Licence
cc-by-nc-sa
Locations
  • The Journal of Cell Biology (publishedVersion, cc-by-nc-sa)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-sa)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion)
  • mediaTUM (Technical University of Munich) (submittedVersion)
  • PuSH - Publication Server of Helmholtz Zentrum München (submittedVersion)
Funders
  • Deutsche Forschungsgemeinschaft (INST 95/1184-1 FUGG, AS110/5-2, AS110/10-1, AS110/8-1)
  • Bayerisch-Kalifornischen Hochschulzentrum (BaCaTEC Nr. 14 [2018-2])
  • National Institutes of Health
  • National Institute of General Medical Sciences (R01GM066258)
  • H2020 European Research Council (648420)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Stress Responses and Tolerance
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
Keywords
trans-Golgi network, SHAGGY-like kinases, glycogen synthase kinase-3, protein phosphorylation, adaptive growth, abiotic stress response, Arabidopsis thaliana, protein-protein interaction network, Golgi trafficking, resource allocation

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