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A putative rhamnogalacturonan-II CMP-β-Kdo transferase identified using CRISPR/Cas9 gene edited callus to circumvent embryo lethality
Open accessPreprint — published as 10.1093/plphys/kiae259
Abstract
Rhamnogalacturonan II (RG-II) is a structurally complex and conserved domain of the pectin present in the primary cell walls of vascular plants. Borate crosslinking of RG-II is required for plants to grow and develop normally. Mutations that alter RG-II structure also affect crosslinking and are lethal or severely impair growth. Thus, few genes involved in RG-II synthesis have been identified. Here we developed a method using CRISPR/Cas9-mediated gene to generate callus carrying loss-of-function mutations in the MPG2 gene that encodes a putative family GT29 glycosyltransferase. Plants homozygous for this mutation do not survive. We show that in the callus mutant cell walls, RG-II does not crosslink normally because it lacks 3-deoxy-D-manno- octulosonic acid (Kdo) and thus cannot form the α-L-Rha p -(1→5)-α-D-kdo p -(1→ sidechain. We suggest that MGP2 encodes an inverting CMP-β -K do transferase (RCKT1). Our discovery provides further insight into the role of sidechains in RG-II dimerization.
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Highly accurate protein structure prediction with AlphaFold
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Metadata
- Authors
- Zhang, Y., Sharma, D., Liang, Y., Downs, N., Dolman, F., Thorne, K., Black, I. M., Pereira, J. H., Adams, P., Scheller, H. V., O’Neill, M., Urbanowicz, B., & Mortimer, J. C.
- Affiliations
- Lawrence Berkeley National Laboratory (US)
- University of Georgia (US)
- The University of Adelaide (AU)
- Corresponding author
- Urbanowicz, Breeanna
- Mortimer, Jenny C.
- ORCID
- Venue
- PLANT PHYSIOLOGY
- Publisher
- openRxiv
- Published
- 2023-11-16
- Volume
- 195
- Issue
- 4
- Pages
- 2551-2565
- ISSN
- 0032-0889 (ISSN-L)
- PMC
- PMC11288761
- OpenAlex
- W4396853674
- Cited by
- 17
- References
- 1
- Citations by year
- 2026: 11 · 2025: 4 · 2024: 2
- FWCI
- 4.13
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- cc-by
- Locations
- PLANT PHYSIOLOGY (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- Funders
- U.S. Department of Energy (-AC02-05CH11231, 05CH11231, DE AC02 05CH11231, DESC0008472, DESC0015662, DE-AC02-)
- University of Georgia
- University of Adelaide
- Office of Science (DEAC02–05CH11231, AC02-05CH11231, DE-AC02, 05CH11231, DESC0015662, DESC0008472)
- Basic Energy Sciences (DE-SC0008472, DE-AC02, 05CH11231, DE-AC02-05CH11231., AC02–05CH11231, DE- SC0015662)
- Biological and Environmental Research (05CH11231, DE-AC02 − 05CH11231, AC02-05CH11231)
- Lawrence Berkeley National Laboratory (AC02‐05CH11231, DE-AC02-05CH11231, 05CH11231)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Polysaccharides and Plant Cell Walls
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant Reproductive Biology
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Surface Properties and Treatments
- Keywords
- rhamnogalacturonan II, pectin biosynthesis, glycosyltransferases, borate crosslinking, CRISPR/Cas9, loss-of-function mutants, Arabidopsis thaliana, cell wall, embryonic lethality
- MeSH terms
- Gene Editing, Cell Wall, Mutation, Pectins, Seeds, Glycosyltransferases, Arabidopsis, Arabidopsis Proteins, CRISPR-Cas Systems
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